AT3G53900

Uracil phosphoribosyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0011897
Physical Location & Seq
Reverse (-)
19956590 .. 19959075
2486 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G53900.1

Sequence Viewer

Length: 696 bp
ATGGCTGCGTCGGAGGCTTCCATTAACGGGAGCAACAGGATGCTGGTCTTTGTGCCACCACATCCTTTGATCAAACACTGGATCTCTGTTCTGAGAAATGAACAAACTCCTTGTCCTGTTTTCAGGAATGCAATAGCTGAACTAGGGAGATTACTCATGTATGAAGCATCACGAGAGTGGCTGCCAACTGTTGTGGGTGAAATAATGTCTCCAATGGGTCCTGCTTCTGTTGAATTCATTGATCCTAGAGAGCCTATTGCGGTTGTTCCGATATTAAGAGCTGGTCTTGCTCTTGCGGAACACGCATCCTCAGTTTTACCTGCTAATAAAATTTATCATTTAGGAGTAAGTAGAGATGAGAAAACACTTTTACCATCGGTGTATCTTAACAAGTTGCCTGATGAATTTCCCAAGAATTCAAGAGTATTTTTGGTCGACCCAGTGCTTGCCACAGGTGGTACCATAATGGCGGCGATGGATCTATTGAAGGAACGTGGTTTGTCTGTTCAGCAAATCAAAGTGATTTGTGCGATTGCTGCACCTCCTGCACTATCGAAGCTTAACGAGAAATTCCCCGGGCTTCATGTATATGCTGGAATTATTGATCCTGAAGTCAATGAAAAGGGGTACATAATCCCTGGGCTTGGAGACGCTGGAGACCGCAGTTTCGGGACAGAAACACATTGGGTGAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003824 GO:0004845 GO:0004849 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006139 GO:0006206 GO:0006213 GO:0006220 GO:0006221 GO:0006222 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0007154 GO:0008150 GO:0008152 GO:0008655 GO:0009058 GO:0009112 GO:0009116 GO:0009117 GO:0009119 GO:0009123 GO:0009124 GO:0009129 GO:0009130 GO:0009156 GO:0009161 GO:0009163 GO:0009165 GO:0009173 GO:0009174 GO:0009218 GO:0009220 GO:0009259 GO:0009260 GO:0009267 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009605 GO:0009987 GO:0009991 GO:0016036 GO:0016301 GO:0016310 GO:0016740 GO:0016757 GO:0016763 GO:0016772 GO:0018130 GO:0019205 GO:0019206 GO:0019438 GO:0019637 GO:0019693 GO:0031667 GO:0031668 GO:0031669 GO:0032502 GO:0033554 GO:0034404 GO:0034641 GO:0034654 GO:0042455 GO:0042594 GO:0043094 GO:0043097 GO:0043174 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046049 GO:0046131 GO:0046132 GO:0046134 GO:0046390 GO:0046483 GO:0050896 GO:0051716 GO:0055086 GO:0071496 GO:0071704 GO:0072527 GO:0072528 GO:0090407 GO:1901135 GO:1901137 GO:1901293 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901657 GO:1901659
KEGG Pathways
Metabolic & Signaling
ko00240 ko01100 map00240 map01100
Pfam Domains
Protein Families
UPRTase

Protein Analysis

231

Amino Acids

25.16

Weight (kDa)

6.31

Isoelectric Point (pI)

38.38

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
UPRTase PF14681 18 - 225 1.4e-68 Uracil phosphoribosyltransferase
Pribosyltran PF00156 82 - 181 4.3e-14 Phosphoribosyl transferase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011897)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G53900 AT3G53900
fragaria_vesca FvH4_6g12970 FvH4_6g12970
malus_domestica MD04G1136300.v1.1 MD12G1150800.v1.1
prunus_persica Prupe.6G262400_v2.0.a1
pyrus_communis pycom12g14470
rosa_chinensis RchiOBHm_Chr3g0465081
rosa_laevigata RLG00000024657
rosa_multiflora Rmu_sc0004362.1_g000003
rosa_roxburghii Rroxscaffold_6G00415260
rosa_rugosa Rorug03G0075100 Rorug03G0075200
rosa_samantha Rh3BG138900 Rh3CG141000 Rh3CG149300 Rh3DG140100
rosa_wichuraiana Rw3G011360

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 328
Acc65I GGTACC 1 cut(s) 458
AccB1I GGYRCC 1 cut(s) 458
AccI GTMKAC 1 cut(s) 435
AciI CCGC 4 cut(s) 260, 296, 470, 661
AclWI GGATC 4 cut(s) 89, 236, 486, 599
AcsI RAATTY 5 cut(s) 233, 330, 404, 415, 569
AcuI CTGAAG 1 cut(s) 630
AfaI GTAC 2 cut(s) 460, 629
AfiI CCNNNNNNNGG 2 cut(s) 27, 644
AgsI TTSAA 3 cut(s) 233, 420, 487
AjnI CCWGG 1 cut(s) 637
AleI CACNNNNGTG 1 cut(s) 175
AluBI AGCT 3 cut(s) 137, 281, 559
AluI AGCT 3 cut(s) 137, 281, 559
Alw26I GTCTC 3 cut(s) 213, 642, 651
AlwI GGATC 4 cut(s) 89, 236, 486, 599
Ama87I CYCGRG 1 cut(s) 575
ApeKI GCWGC 3 cut(s) 5, 181, 536
ApoI RAATTY 5 cut(s) 233, 330, 404, 415, 569
ArsI GACNNNNNNTTYG 4 cut(s) 97, 129, 650, 682
Asp718I GGTACC 1 cut(s) 458
AspS9I GGNCC 1 cut(s) 218
AsuC2I CCSGG 2 cut(s) 576, 577
AsuHPI GGTGA 1 cut(s) 209
AvaI CYCGRG 1 cut(s) 575
AvaII GGWCC 1 cut(s) 218
BanI GGYRCC 1 cut(s) 458
BauI CACGAG 1 cut(s) 171
BbvI GCAGC 2 cut(s) 168, 523
BccI CCATC 2 cut(s) 382, 469
BciT130I CCWGG 1 cut(s) 639
BclI TGATCA 1 cut(s) 69
BcnI CCSGG 2 cut(s) 576, 577
BcoDI GTCTC 3 cut(s) 213, 642, 651
BfaI CTAG 2 cut(s) 143, 246
BfuAI ACCTGC 1 cut(s) 328
BisI GCNGC 4 cut(s) 6, 182, 471, 537
BlsI GCNGC 4 cut(s) 7, 183, 472, 538
Bme1390I CCNGG 3 cut(s) 576, 577, 639
Bme18I GGWCC 1 cut(s) 218
BmeT110I CYCGRG 1 cut(s) 575
BmgT120I GGNCC 1 cut(s) 218
BmiI GGNNCC 2 cut(s) 219, 460
BmrFI CCNGG 3 cut(s) 576, 577, 639
BmrI ACTGGG 1 cut(s) 434
BmsI GCATC 3 cut(s) 30, 176, 314
BmuI ACTGGG 1 cut(s) 434
BpmI CTGGAG 1 cut(s) 675
BpuMI CCSGG 2 cut(s) 576, 577
BsaI GGTCTC 1 cut(s) 651
BsaJI CCNNGG 4 cut(s) 574, 575, 637, 638
Bsc4I CCNNNNNNNGG 2 cut(s) 27, 644
Bse1I ACTGG 2 cut(s) 83, 440
BseBI CCWGG 1 cut(s) 639
BseDI CCNNGG 4 cut(s) 574, 575, 637, 638
BseGI GGATG 3 cut(s) 45, 61, 305
BseLI CCNNNNNNNGG 2 cut(s) 27, 644
BseMII CTCAG 2 cut(s) 83, 324
BseNI ACTGG 2 cut(s) 83, 440
BseXI GCAGC 2 cut(s) 168, 523
BsgI GTGCAG 2 cut(s) 522, 531
BshNI GGYRCC 1 cut(s) 458
BsiHKCI CYCGRG 1 cut(s) 575
BsiSI CCGG 1 cut(s) 576
BslFI GGGAC 1 cut(s) 685
BslI CCNNNNNNNGG 2 cut(s) 27, 644
BsmAI GTCTC 3 cut(s) 213, 642, 651
BsmBI CGTCTC 1 cut(s) 642
BsmFI GGGAC 1 cut(s) 685
BsmI GAATGC 1 cut(s) 133
Bso31I GGTCTC 1 cut(s) 651
BsoBI CYCGRG 1 cut(s) 575
Bsp143I GATC 5 cut(s) 69, 81, 241, 478, 604
BspACI CCGC 4 cut(s) 260, 296, 470, 661
BspCNI CTCAG 2 cut(s) 84, 323
BspLI GGNNCC 2 cut(s) 219, 460
BspMI ACCTGC 1 cut(s) 328
BspPI GGATC 4 cut(s) 89, 236, 486, 599
BspT107I GGYRCC 1 cut(s) 458
BspTNI GGTCTC 1 cut(s) 651
BsrI ACTGG 2 cut(s) 83, 440
BssECI CCNNGG 4 cut(s) 574, 575, 637, 638
BssMI GATC 5 cut(s) 69, 81, 241, 478, 604
BssSI CACGAG 1 cut(s) 171
Bst2BI CACGAG 1 cut(s) 171
Bst2UI CCWGG 1 cut(s) 639
Bst4CI ACNGT 1 cut(s) 190
BstAPI GCANNNNNTGC 1 cut(s) 545
BstC8I GCNNGC 1 cut(s) 447
BstDEI CTNAG 2 cut(s) 92, 310
BstF5I GGATG 3 cut(s) 45, 61, 305
BstKTI GATC 5 cut(s) 72, 84, 244, 481, 607
BstMAI GTCTC 3 cut(s) 213, 642, 651
BstMBI GATC 5 cut(s) 69, 81, 241, 478, 604
BstMWI GCNNNNNNNGC 5 cut(s) 14, 287, 302, 536, 545
BstNI CCWGG 1 cut(s) 639
BstSCI CCNGG 3 cut(s) 574, 575, 637
BstV1I GCAGC 2 cut(s) 168, 523
BstX2I RGATCY 2 cut(s) 81, 478
BstYI RGATCY 2 cut(s) 81, 478
BtgZI GCGATG 1 cut(s) 488
BtsCI GGATG 3 cut(s) 45, 61, 305
BtsIMutI CAGTG 2 cut(s) 76, 447
BveI ACCTGC 1 cut(s) 328
Cac8I GCNNGC 1 cut(s) 447
Cfr13I GGNCC 1 cut(s) 218
Cfr9I CCCGGG 1 cut(s) 575
CseI GACGC 1 cut(s) 659
Csp6I GTAC 2 cut(s) 459, 628
CspCI CAANNNNNGTGG 4 cut(s) 48, 83, 174, 209
CviAII CATG 2 cut(s) 157, 584
CviJI RGCY 9 cut(s) 5, 17, 137, 181, 253, 281, 559, 580, 643
CviKI_1 RGCY 9 cut(s) 5, 17, 137, 181, 253, 281, 559, 580, 643
CviQI GTAC 2 cut(s) 459, 628
DdeI CTNAG 2 cut(s) 92, 310
DpnI GATC 5 cut(s) 71, 83, 243, 480, 606
DpnII GATC 5 cut(s) 69, 81, 241, 478, 604
Eco31I GGTCTC 1 cut(s) 651
Eco47I GGWCC 1 cut(s) 218
Eco57I CTGAAG 1 cut(s) 630
Eco88I CYCGRG 1 cut(s) 575
EcoO109I RGGNCCY 1 cut(s) 218
EcoRI GAATTC 2 cut(s) 233, 415
EcoRII CCWGG 1 cut(s) 637
Esp3I CGTCTC 1 cut(s) 642
FaeI CATG 2 cut(s) 160, 587
FaiI YATR 7 cut(s) 158, 162, 464, 585, 589, 591, 632
FaqI GGGAC 1 cut(s) 685
FatI CATG 2 cut(s) 156, 583
FbaI TGATCA 1 cut(s) 69
FblI GTMKAC 1 cut(s) 435
Fnu4HI GCNGC 4 cut(s) 6, 182, 471, 537
FokI GGATG 3 cut(s) 48, 52, 292
Fsp4HI GCNGC 4 cut(s) 6, 182, 471, 537
FspBI CTAG 2 cut(s) 143, 246
GluI GCNGC 4 cut(s) 6, 182, 471, 537
GsuI CTGGAG 1 cut(s) 675
HapII CCGG 1 cut(s) 576
HgaI GACGC 1 cut(s) 659
Hin1II CATG 2 cut(s) 160, 587
HincII GTYRAC 1 cut(s) 436
HindII GTYRAC 1 cut(s) 436
HindIII AAGCTT 1 cut(s) 557
HpaII CCGG 1 cut(s) 576
HphI GGTGA 1 cut(s) 209
Hpy166II GTNNAC 1 cut(s) 436
Hpy188I TCNGA 3 cut(s) 13, 93, 270
Hpy188III TCNNGA 5 cut(s) 124, 171, 420, 608, 670
Hpy8I GTNNAC 1 cut(s) 436
Hpy99I CGWCG 1 cut(s) 13
HpyAV CCTTC 1 cut(s) 481
HpyCH4III ACNGT 1 cut(s) 190
HpyCH4IV ACGT 1 cut(s) 493
HpyCH4V TGCA 3 cut(s) 131, 539, 548
HpyF10VI GCNNNNNNNGC 5 cut(s) 14, 287, 302, 536, 545
HpyF3I CTNAG 2 cut(s) 92, 310
HpySE526I ACGT 1 cut(s) 493
Hsp92II CATG 2 cut(s) 160, 587
KpnI GGTACC 1 cut(s) 462
Ksp22I TGATCA 1 cut(s) 69
Kzo9I GATC 5 cut(s) 69, 81, 241, 478, 604
LmnI GCTCC 1 cut(s) 30
Lsp1109I GCAGC 2 cut(s) 168, 523
LweI GCATC 3 cut(s) 30, 176, 314
MaeI CTAG 2 cut(s) 143, 246
MaeII ACGT 1 cut(s) 493
MalI GATC 5 cut(s) 71, 83, 243, 480, 606
MboI GATC 5 cut(s) 69, 81, 241, 478, 604
MflI RGATCY 2 cut(s) 81, 478
MluCI AATT 6 cut(s) 233, 330, 404, 415, 569, 597
MnlI CCTC 3 cut(s) 7, 319, 552
MseI TTAA 4 cut(s) 24, 275, 387, 561
MslI CAYNNNNRTG 2 cut(s) 175, 588
MspI CCGG 1 cut(s) 576
MspR9I CCNGG 3 cut(s) 576, 577, 639
Mva1269I GAATGC 1 cut(s) 133
MvaI CCWGG 1 cut(s) 639
MwoI GCNNNNNNNGC 5 cut(s) 14, 287, 302, 536, 545
NciI CCSGG 2 cut(s) 576, 577
NdeII GATC 5 cut(s) 69, 81, 241, 478, 604
NlaIII CATG 2 cut(s) 160, 587
NlaIV GGNNCC 2 cut(s) 219, 460
OliI CACNNNNGTG 1 cut(s) 175
PasI CCCWGGG 1 cut(s) 638
PctI GAATGC 1 cut(s) 133
PkrI GCNGC 4 cut(s) 7, 183, 472, 538
PpuMI RGGWCCY 1 cut(s) 218
Psp5II RGGWCCY 1 cut(s) 218
Psp6I CCWGG 1 cut(s) 637
PspGI CCWGG 1 cut(s) 637
PspN4I GGNNCC 2 cut(s) 219, 460
PspPI GGNCC 1 cut(s) 218
PspPPI RGGWCCY 1 cut(s) 218
PsuI RGATCY 2 cut(s) 81, 478
RsaI GTAC 2 cut(s) 460, 629
RsaNI GTAC 2 cut(s) 459, 628
RseI CAYNNNNRTG 2 cut(s) 175, 588
SalI GTCGAC 1 cut(s) 434
SaqAI TTAA 4 cut(s) 24, 275, 387, 561
SatI GCNGC 4 cut(s) 6, 182, 471, 537
Sau3AI GATC 5 cut(s) 69, 81, 241, 478, 604
Sau96I GGNCC 1 cut(s) 218
ScrFI CCNGG 3 cut(s) 576, 577, 639
SetI ASST 7 cut(s) 139, 283, 322, 457, 496, 544, 561
SfaNI GCATC 3 cut(s) 30, 176, 314
SinI GGWCC 1 cut(s) 218
SmaI CCCGGG 1 cut(s) 577
SmiMI CAYNNNNRTG 2 cut(s) 175, 588
Sse9I AATT 6 cut(s) 233, 330, 404, 415, 569, 597
SsiI CCGC 4 cut(s) 260, 296, 470, 661
SspMI CTAG 2 cut(s) 143, 246
StyD4I CCNGG 3 cut(s) 574, 575, 637
TaaI ACNGT 1 cut(s) 190
TaiI ACGT 1 cut(s) 496
TaqI TCGA 2 cut(s) 435, 554
TasI AATT 6 cut(s) 233, 330, 404, 415, 569, 597
TauI GCSGC 1 cut(s) 473
Tru1I TTAA 4 cut(s) 24, 275, 387, 561
Tru9I TTAA 4 cut(s) 24, 275, 387, 561
TscAI CASTG 2 cut(s) 83, 447
TseI GCWGC 3 cut(s) 5, 181, 536
TspDTI ATGAA 6 cut(s) 114, 177, 226, 417, 572, 633
TspMI CCCGGG 1 cut(s) 575
TspRI CASTG 2 cut(s) 83, 447
VpaK11BI GGWCC 1 cut(s) 218
XapI RAATTY 5 cut(s) 233, 330, 404, 415, 569
XmaI CCCGGG 1 cut(s) 575
XmiI GTMKAC 1 cut(s) 435
XspI CTAG 2 cut(s) 143, 246
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.