Rh3CG149300

Uracil phosphoribosyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3C
OG0011897
Physical Location & Seq
Reverse (-)
12448680 .. 12452512
3833 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3CG149300.1

Sequence Viewer

Length: 936 bp
ATGGCGTCGTGTCGTTTACATTTCTCTCTACACTGTCCCTCCCAATCCCAAACTCCACGTCTCTCTTCCCGAAACCCTACCTCCCCTCCCCTACTTAATCTCATTCCCTCCTCCTCTAATCCCCAAAAGGTCTCTTATTCCGGTACGCGACGCCGGAGATCACTTACCGTGAAGGCCCACATGACCACCCAGGAGAAGGCGGTTTCCGGCGACCGAATGCTGGTCTTTGTGCCGCCGCACCCGTTGATTAAGCATTGGGTTTCAGTCCTGAGAAATGAGCAGACCCCTTGCCCCATTTTCAAAAATGCCATGGCTGAGTTGGGGAGACTTCTTATTTATGAAGCTTCAAGAGATTGGTTGCCTACGGTCACTGGAGAAATTCAATCACCAATGGGTGTTGCATCAGTTGAATTCATAGATCCAAGGGAGCCTGTGGCGGTCGTTCCAATACTGAGAGCTGGTCTAGCTCTTATGGAACATGCATCATCCGTCTTGCCAGCAACAAAAACGTACCATCTTGGAATGGCCCGAGACGAGGAAACACTTCTACCAACTATATATCTTAACAAGCTACCTGCAAAATTTCCTGAAGGATCTCGAGTATTTCTGTTTGATCCGATGCTAGCAACAGGTATCAATATCATACTTGTGTGGGTGTCCGATTGGATTGATAAAAGATGCGTCATAAGTGACCACTTCATCTGTTCATATATTTTAGCAGAAAATTTTGCAGTTTGCACTGAATTGTTATATTGGGTTGACTCGATTCTTTCTCTCTGTCCCCTTATTTTCATTTCAGGTGGCACAATAGTGGCCGCTGTGGACCTATTGAAGGAGCATGGGCTTGCTAACAAGCAAATCAAAGTTGTAAGTATTGTGAAGGGGTTCCTTATGTTTACTATAAGTGTCTTGATAGGTCATATATCCTGTGAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003824 GO:0004845 GO:0004849 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006139 GO:0006206 GO:0006213 GO:0006220 GO:0006221 GO:0006222 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0007154 GO:0008150 GO:0008152 GO:0008655 GO:0009058 GO:0009112 GO:0009116 GO:0009117 GO:0009119 GO:0009123 GO:0009124 GO:0009129 GO:0009130 GO:0009156 GO:0009161 GO:0009163 GO:0009165 GO:0009173 GO:0009174 GO:0009218 GO:0009220 GO:0009259 GO:0009260 GO:0009267 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009605 GO:0009987 GO:0009991 GO:0016036 GO:0016301 GO:0016310 GO:0016740 GO:0016757 GO:0016763 GO:0016772 GO:0018130 GO:0019205 GO:0019206 GO:0019438 GO:0019637 GO:0019693 GO:0031667 GO:0031668 GO:0031669 GO:0032502 GO:0033554 GO:0034404 GO:0034641 GO:0034654 GO:0042455 GO:0042594 GO:0043094 GO:0043097 GO:0043174 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046049 GO:0046131 GO:0046132 GO:0046134 GO:0046390 GO:0046483 GO:0050896 GO:0051716 GO:0055086 GO:0071496 GO:0071704 GO:0072527 GO:0072528 GO:0090407 GO:1901135 GO:1901137 GO:1901293 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901657 GO:1901659
KEGG Pathways
Metabolic & Signaling
ko00240 ko01100 map00240 map01100
Pfam Domains
Protein Families
UPRTase

Protein Analysis

311

Amino Acids

34.51

Weight (kDa)

8.61

Isoelectric Point (pI)

48.81

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
UPRTase PF14681 77 - 215 9e-38 Uracil phosphoribosyltransferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011897)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G53900 AT3G53900
fragaria_vesca FvH4_6g12970 FvH4_6g12970
malus_domestica MD04G1136300.v1.1 MD12G1150800.v1.1
prunus_persica Prupe.6G262400_v2.0.a1
pyrus_communis pycom12g14470
rosa_chinensis RchiOBHm_Chr3g0465081
rosa_laevigata RLG00000024657
rosa_multiflora Rmu_sc0004362.1_g000003
rosa_roxburghii Rroxscaffold_6G00415260
rosa_rugosa Rorug03G0075100 Rorug03G0075200
rosa_samantha Rh3BG138900 Rh3CG141000 Rh3CG149300 Rh3DG140100
rosa_wichuraiana Rw3G011360

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 583
AccII CGCG 1 cut(s) 148
AciI CCGC 5 cut(s) 200, 233, 236, 437, 816
AclWI GGATC 3 cut(s) 413, 601, 608
AcoI YGGCCR 1 cut(s) 813
AcsI RAATTY 4 cut(s) 378, 410, 581, 724
AcuI CTGAAG 1 cut(s) 609
AcyI GRCGYC 2 cut(s) 5, 151
AfaI GTAC 2 cut(s) 145, 512
AfiI CCNNNNNNNGG 4 cut(s) 196, 220, 535, 832
AgsI TTSAA 5 cut(s) 301, 348, 383, 410, 832
AjiI CACGTC 1 cut(s) 59
AjnI CCWGG 1 cut(s) 189
AleI CACNNNNGTG 1 cut(s) 809
AluBI AGCT 4 cut(s) 344, 458, 467, 571
AluI AGCT 4 cut(s) 344, 458, 467, 571
Alw26I GTCTC 4 cut(s) 65, 136, 319, 525
AlwI GGATC 3 cut(s) 413, 601, 608
Ama87I CYCGRG 2 cut(s) 528, 597
AoxI GGCC 3 cut(s) 174, 525, 813
ApoI RAATTY 4 cut(s) 378, 410, 581, 724
ArsI GACNNNNNNTTYG 2 cut(s) 43, 75
Asp700I GAANNNNTTC 2 cut(s) 543, 884
AspS9I GGNCC 3 cut(s) 175, 526, 823
AsuHPI GGTGA 1 cut(s) 378
AsuNHI GCTAGC 1 cut(s) 622
AvaI CYCGRG 2 cut(s) 528, 597
AvaII GGWCC 1 cut(s) 823
BccI CCATC 1 cut(s) 522
BciT130I CCWGG 1 cut(s) 191
BcoDI GTCTC 4 cut(s) 65, 136, 319, 525
BfaI CTAG 2 cut(s) 464, 623
BfuAI ACCTGC 1 cut(s) 583
BisI GCNGC 3 cut(s) 233, 236, 816
BlsI GCNGC 3 cut(s) 234, 237, 817
Bme1390I CCNGG 1 cut(s) 191
Bme18I GGWCC 1 cut(s) 823
BmeT110I CYCGRG 2 cut(s) 528, 597
BmgBI CACGTC 1 cut(s) 59
BmgT120I GGNCC 3 cut(s) 175, 526, 823
BmiI GGNNCC 2 cut(s) 429, 887
BmrFI CCNGG 1 cut(s) 191
BmsI GCATC 4 cut(s) 410, 491, 609, 668
BmtI GCTAGC 1 cut(s) 626
BpmI CTGGAG 1 cut(s) 393
BsaHI GRCGYC 2 cut(s) 5, 151
BsaI GGTCTC 1 cut(s) 136
BsaJI CCNNGG 3 cut(s) 189, 309, 422
BsaWI WCCGGW 1 cut(s) 140
BsaXI ACNNNNNCTCC 6 cut(s) 23, 53, 65, 70, 95, 100
Bsc4I CCNNNNNNNGG 4 cut(s) 196, 220, 535, 832
Bse1I ACTGG 1 cut(s) 376
BseBI CCWGG 1 cut(s) 191
BseDI CCNNGG 3 cut(s) 189, 309, 422
BseGI GGATG 1 cut(s) 485
BseLI CCNNNNNNNGG 4 cut(s) 196, 220, 535, 832
BseMII CTCAG 3 cut(s) 260, 306, 443
BseNI ACTGG 1 cut(s) 376
BseRI GAGGAG 2 cut(s) 100, 103
Bsh1236I CGCG 1 cut(s) 148
Bsh1285I CGRYCG 2 cut(s) 214, 441
BshFI GGCC 3 cut(s) 176, 527, 815
BsiEI CGRYCG 2 cut(s) 214, 441
BsiHKCI CYCGRG 2 cut(s) 528, 597
BsiSI CCGG 3 cut(s) 141, 154, 207
BslFI GGGAC 2 cut(s) 21, 765
BslI CCNNNNNNNGG 4 cut(s) 196, 220, 535, 832
BsmAI GTCTC 4 cut(s) 65, 136, 319, 525
BsmBI CGTCTC 2 cut(s) 65, 525
BsmFI GGGAC 2 cut(s) 21, 765
BsmI GAATGC 1 cut(s) 222
BsnI GGCC 3 cut(s) 176, 527, 815
Bso31I GGTCTC 1 cut(s) 136
BsoBI CYCGRG 2 cut(s) 528, 597
Bsp143I GATC 4 cut(s) 158, 418, 593, 613
Bsp19I CCATGG 1 cut(s) 309
BspACI CCGC 5 cut(s) 200, 233, 236, 437, 816
BspANI GGCC 3 cut(s) 176, 527, 815
BspCNI CTCAG 3 cut(s) 261, 307, 444
BspFNI CGCG 1 cut(s) 148
BspLI GGNNCC 2 cut(s) 429, 887
BspMI ACCTGC 1 cut(s) 583
BspOI GCTAGC 1 cut(s) 626
BspPI GGATC 3 cut(s) 413, 601, 608
BspTNI GGTCTC 1 cut(s) 136
BsrI ACTGG 1 cut(s) 376
BssECI CCNNGG 3 cut(s) 189, 309, 422
BssMI GATC 4 cut(s) 158, 418, 593, 613
BssNI GRCGYC 2 cut(s) 5, 151
BssT1I CCWWGG 2 cut(s) 309, 422
Bst2UI CCWGG 1 cut(s) 191
Bst4CI ACNGT 3 cut(s) 35, 169, 367
Bst6I CTCTTC 1 cut(s) 70
BstACI GRCGYC 2 cut(s) 5, 151
BstC8I GCNNGC 3 cut(s) 498, 624, 846
BstDEI CTNAG 3 cut(s) 269, 315, 452
BstDSI CCRYGG 1 cut(s) 309
BstENI CCTNNNNNAGG 1 cut(s) 830
BstF5I GGATG 1 cut(s) 485
BstFNI CGCG 1 cut(s) 148
BstKTI GATC 4 cut(s) 161, 421, 596, 616
BstMAI GTCTC 4 cut(s) 65, 136, 319, 525
BstMBI GATC 4 cut(s) 158, 418, 593, 613
BstMCI CGRYCG 2 cut(s) 214, 441
BstMWI GCNNNNNNNGC 1 cut(s) 464
BstNI CCWGG 1 cut(s) 191
BstNSI RCATGY 1 cut(s) 482
BstSCI CCNGG 1 cut(s) 189
BstUI CGCG 1 cut(s) 148
BstX2I RGATCY 2 cut(s) 418, 593
BstYI RGATCY 2 cut(s) 418, 593
BsuRI GGCC 3 cut(s) 176, 527, 815
BtgI CCRYGG 1 cut(s) 309
BtrI CACGTC 1 cut(s) 59
BtsCI GGATG 1 cut(s) 485
BtsIMutI CAGTG 3 cut(s) 31, 369, 738
BveI ACCTGC 1 cut(s) 583
Cac8I GCNNGC 3 cut(s) 498, 624, 846
Cfr13I GGNCC 3 cut(s) 175, 526, 823
CseI GACGC 2 cut(s) 159, 670
Csp6I GTAC 2 cut(s) 144, 511
CviAII CATG 4 cut(s) 181, 310, 479, 839
CviQI GTAC 2 cut(s) 144, 511
DdeI CTNAG 3 cut(s) 269, 315, 452
DpnI GATC 4 cut(s) 160, 420, 595, 615
DpnII GATC 4 cut(s) 158, 418, 593, 613
EaeI YGGCCR 1 cut(s) 813
Eam1104I CTCTTC 1 cut(s) 70
EarI CTCTTC 1 cut(s) 70
Eco130I CCWWGG 2 cut(s) 309, 422
Eco31I GGTCTC 1 cut(s) 136
Eco47I GGWCC 1 cut(s) 823
Eco57I CTGAAG 1 cut(s) 609
Eco88I CYCGRG 2 cut(s) 528, 597
EcoNI CCTNNNNNAGG 1 cut(s) 830
EcoRI GAATTC 1 cut(s) 410
EcoRII CCWGG 1 cut(s) 189
EcoT14I CCWWGG 2 cut(s) 309, 422
EcoT22I ATGCAT 1 cut(s) 484
ErhI CCWWGG 2 cut(s) 309, 422
Esp3I CGTCTC 2 cut(s) 65, 525
FaeI CATG 4 cut(s) 184, 313, 482, 842
FaqI GGGAC 2 cut(s) 21, 765
FatI CATG 4 cut(s) 180, 309, 478, 838
Fnu4HI GCNGC 3 cut(s) 233, 236, 816
FokI GGATG 1 cut(s) 472
Fsp4HI GCNGC 3 cut(s) 233, 236, 816
FspBI CTAG 2 cut(s) 464, 623
GluI GCNGC 3 cut(s) 233, 236, 816
GsuI CTGGAG 1 cut(s) 393
HaeIII GGCC 3 cut(s) 176, 527, 815
HapII CCGG 3 cut(s) 141, 154, 207
HgaI GACGC 2 cut(s) 159, 670
Hin1I GRCGYC 2 cut(s) 5, 151
Hin1II CATG 4 cut(s) 184, 313, 482, 842
HincII GTYRAC 1 cut(s) 760
HindII GTYRAC 1 cut(s) 760
HindIII AAGCTT 1 cut(s) 342
HinfI GANTC 2 cut(s) 761, 766
HpaII CCGG 3 cut(s) 141, 154, 207
HphI GGTGA 1 cut(s) 378
Hpy166II GTNNAC 4 cut(s) 17, 760, 823, 897
Hpy188I TCNGA 2 cut(s) 618, 661
Hpy188III TCNNGA 6 cut(s) 69, 268, 348, 587, 597, 910
Hpy8I GTNNAC 4 cut(s) 17, 760, 823, 897
Hpy99I CGWCG 2 cut(s) 10, 153
HpyAV CCTTC 5 cut(s) 166, 190, 584, 826, 874
HpyCH4III ACNGT 3 cut(s) 35, 169, 367
HpyCH4IV ACGT 2 cut(s) 58, 509
HpyCH4V TGCA 5 cut(s) 401, 482, 578, 731, 738
HpyF10VI GCNNNNNNNGC 1 cut(s) 464
HpyF3I CTNAG 3 cut(s) 269, 315, 452
HpySE526I ACGT 2 cut(s) 58, 509
Hsp92I GRCGYC 2 cut(s) 5, 151
Hsp92II CATG 4 cut(s) 184, 313, 482, 842
Kzo9I GATC 4 cut(s) 158, 418, 593, 613
LmnI GCTCC 2 cut(s) 427, 835
LweI GCATC 4 cut(s) 410, 491, 609, 668
MaeI CTAG 2 cut(s) 464, 623
MaeII ACGT 2 cut(s) 58, 509
MaeIII GTNAC 2 cut(s) 367, 689
MalI GATC 4 cut(s) 160, 420, 595, 615
MboI GATC 4 cut(s) 158, 418, 593, 613
MboII GAAGA 1 cut(s) 57
MflI RGATCY 2 cut(s) 418, 593
MluCI AATT 5 cut(s) 378, 410, 581, 724, 743
MlyI GAGTC 1 cut(s) 755
MnlI CCTC 7 cut(s) 49, 91, 96, 118, 121, 124, 529
Mph1103I ATGCAT 1 cut(s) 484
MroXI GAANNNNTTC 2 cut(s) 543, 884
MseI TTAA 3 cut(s) 96, 249, 564
MslI CAYNNNNRTG 2 cut(s) 647, 809
MspA1I CMGCKG 1 cut(s) 818
MspI CCGG 3 cut(s) 141, 154, 207
MspR9I CCNGG 1 cut(s) 191
Mva1269I GAATGC 1 cut(s) 222
MvaI CCWGG 1 cut(s) 191
MvnI CGCG 1 cut(s) 148
MwoI GCNNNNNNNGC 1 cut(s) 464
NcoI CCATGG 1 cut(s) 309
NdeII GATC 4 cut(s) 158, 418, 593, 613
NheI GCTAGC 1 cut(s) 622
NlaIII CATG 4 cut(s) 184, 313, 482, 842
NlaIV GGNNCC 2 cut(s) 429, 887
NmuCI GTSAC 2 cut(s) 367, 689
NsiI ATGCAT 1 cut(s) 484
NspI RCATGY 1 cut(s) 482
OliI CACNNNNGTG 1 cut(s) 809
PaeR7I CTCGAG 1 cut(s) 597
PctI GAATGC 1 cut(s) 222
PdmI GAANNNNTTC 2 cut(s) 543, 884
PfeI GAWTC 1 cut(s) 766
PkrI GCNGC 3 cut(s) 234, 237, 817
PleI GAGTC 1 cut(s) 755
PpsI GAGTC 1 cut(s) 755
Psp6I CCWGG 1 cut(s) 189
PspGI CCWGG 1 cut(s) 189
PspN4I GGNNCC 2 cut(s) 429, 887
PspPI GGNCC 3 cut(s) 175, 526, 823
PsuI RGATCY 2 cut(s) 418, 593
RsaI GTAC 2 cut(s) 145, 512
RsaNI GTAC 2 cut(s) 144, 511
RseI CAYNNNNRTG 2 cut(s) 647, 809
SaqAI TTAA 3 cut(s) 96, 249, 564
SatI GCNGC 3 cut(s) 233, 236, 816
Sau3AI GATC 4 cut(s) 158, 418, 593, 613
Sau96I GGNCC 3 cut(s) 175, 526, 823
SchI GAGTC 1 cut(s) 755
ScrFI CCNGG 1 cut(s) 191
SfaNI GCATC 4 cut(s) 410, 491, 609, 668
Sfr274I CTCGAG 1 cut(s) 597
SinI GGWCC 1 cut(s) 823
SlaI CTCGAG 1 cut(s) 597
SmiMI CAYNNNNRTG 2 cut(s) 647, 809
SmlI CTYRAG 1 cut(s) 597
SmoI CTYRAG 1 cut(s) 597
Sse9I AATT 5 cut(s) 378, 410, 581, 724, 743
SsiI CCGC 5 cut(s) 200, 233, 236, 437, 816
SspMI CTAG 2 cut(s) 464, 623
StyD4I CCNGG 1 cut(s) 189
StyI CCWWGG 2 cut(s) 309, 422
TaaI ACNGT 3 cut(s) 35, 169, 367
TaiI ACGT 2 cut(s) 61, 512
TaqI TCGA 2 cut(s) 598, 764
TaqII GACCGA 1 cut(s) 228
TasI AATT 5 cut(s) 378, 410, 581, 724, 743
TauI GCSGC 3 cut(s) 235, 238, 818
TfiI GAWTC 1 cut(s) 766
Tru1I TTAA 3 cut(s) 96, 249, 564
Tru9I TTAA 3 cut(s) 96, 249, 564
TscAI CASTG 3 cut(s) 38, 376, 745
TseFI GTSAC 2 cut(s) 367, 689
Tsp45I GTSAC 2 cut(s) 367, 689
TspDTI ATGAA 5 cut(s) 354, 403, 688, 696, 781
TspGWI ACGGA 1 cut(s) 478
TspRI CASTG 3 cut(s) 38, 376, 745
VpaK11BI GGWCC 1 cut(s) 823
XagI CCTNNNNNAGG 1 cut(s) 830
XapI RAATTY 4 cut(s) 378, 410, 581, 724
XceI RCATGY 1 cut(s) 482
XcmI CCANNNNNNNNNTGG 1 cut(s) 316
XhoI CTCGAG 1 cut(s) 597
XmnI GAANNNNTTC 2 cut(s) 543, 884
XspI CTAG 2 cut(s) 464, 623
Zsp2I ATGCAT 1 cut(s) 484
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.