RchiOBHm_Chr3g0465081

Uracil phosphoribosyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
OG0011897
Physical Location & Seq
Reverse (-)
11980510 .. 11983448
2939 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ43125

Sequence Viewer

Length: 855 bp
ATGGCGTCGTGTCGTTTACATTTCTCTCTACACTGTCCCTCCCAATCCCAAACTCCACGTCTCTCTTCCCGAAACCCTACCTCCCCTCCCCTACTTAATCTCATTCCCTCCTCCTCTAATCCCCAAAAGGTCTCTTATTCCGGTACGCGACGCCGGAGATCACTTACCGTGAAGGCCCACATGACCACCCAGGAGAAGGCGGTTTCCGGCGACCGAATGCTGGTCTTTGTGCCGCCGCACCCGTTGATTAAGCATTGGGTTTCAGTCCTGAGAAATGAGCAGACCCCTTGCCCCATTTTCAAAAATGCCATGGCTGAGTTGGGGAGACTTCTTATTTATGAAGCTTCAAGAGATTGGTTGCCTACGGTCACTGGAGAAATTCAATCACCAATGGGTGTTGCATCAGTTGAATTCATAGATCCAAGGGAGCCTGTGGCGGTCGTTCCAATACTGAGAGCTGGTCTAGCTCTTATGGAACATGCATCATCCGTCTTGCCAGCAACAAAAACGTACCATCTTGGAATGGCCCGAGACGAGGAAACACTTCTACCAACTATATATCTTAACAAGCTACCTGCAAAATTTCCTGAAGGATCTCGAGTATTTCTGTTTGATCCGATGCTAGCAACAGGTGGCACAATAGTGGCCGCTGTGGACCTATTGAAGGAGCATGGGCTTGCTAACAAGCAAATCAAAGTTATATCTGCTGTAGCTGCTCCTCCGGCCCTTCAAAAGCTGAGCGAGAAATTTCCCGGGCTTCATGTGTACACTGGGATCATTGATCCTACTGTAAATGATAAAGGGTTTATAATCCCTGGTCTGGGTGATGCTGGAGACCGTAGCTTTGGTACCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003824 GO:0004845 GO:0004849 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006139 GO:0006206 GO:0006213 GO:0006220 GO:0006221 GO:0006222 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0007154 GO:0008150 GO:0008152 GO:0008655 GO:0009058 GO:0009112 GO:0009116 GO:0009117 GO:0009119 GO:0009123 GO:0009124 GO:0009129 GO:0009130 GO:0009156 GO:0009161 GO:0009163 GO:0009165 GO:0009173 GO:0009174 GO:0009218 GO:0009220 GO:0009259 GO:0009260 GO:0009267 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009605 GO:0009987 GO:0009991 GO:0016036 GO:0016301 GO:0016310 GO:0016740 GO:0016757 GO:0016763 GO:0016772 GO:0018130 GO:0019205 GO:0019206 GO:0019438 GO:0019637 GO:0019693 GO:0031667 GO:0031668 GO:0031669 GO:0032502 GO:0033554 GO:0034404 GO:0034641 GO:0034654 GO:0042455 GO:0042594 GO:0043094 GO:0043097 GO:0043174 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046049 GO:0046131 GO:0046132 GO:0046134 GO:0046390 GO:0046483 GO:0050896 GO:0051716 GO:0055086 GO:0071496 GO:0071704 GO:0072527 GO:0072528 GO:0090407 GO:1901135 GO:1901137 GO:1901293 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901657 GO:1901659
KEGG Pathways
Metabolic & Signaling
ko00240 ko01100 map00240 map01100
Pfam Domains
Protein Families
UPRTase

Protein Analysis

284

Amino Acids

30.93

Weight (kDa)

9.4

Isoelectric Point (pI)

49.21

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
UPRTase PF14681 77 - 284 2.2e-68 Uracil phosphoribosyltransferase
Pribosyltran PF00156 141 - 239 1.9e-11 Phosphoribosyl transferase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011897)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G53900 AT3G53900
fragaria_vesca FvH4_6g12970 FvH4_6g12970
malus_domestica MD04G1136300.v1.1 MD12G1150800.v1.1
prunus_persica Prupe.6G262400_v2.0.a1
pyrus_communis pycom12g14470
rosa_chinensis RchiOBHm_Chr3g0465081
rosa_laevigata RLG00000024657
rosa_multiflora Rmu_sc0004362.1_g000003
rosa_roxburghii Rroxscaffold_6G00415260
rosa_rugosa Rorug03G0075100 Rorug03G0075200
rosa_samantha Rh3BG138900 Rh3CG141000 Rh3CG149300 Rh3DG140100
rosa_wichuraiana Rw3G011360

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 809
Acc36I ACCTGC 1 cut(s) 583
Acc65I GGTACC 1 cut(s) 848
AccB1I GGYRCC 1 cut(s) 848
AccII CGCG 1 cut(s) 148
AciI CCGC 5 cut(s) 200, 233, 236, 437, 648
AclWI GGATC 5 cut(s) 413, 601, 608, 776, 782
AcoI YGGCCR 1 cut(s) 645
AcsI RAATTY 4 cut(s) 378, 410, 581, 746
AcuI CTGAAG 1 cut(s) 609
AcyI GRCGYC 2 cut(s) 5, 151
AfaI GTAC 4 cut(s) 145, 512, 767, 850
AfiI CCNNNNNNNGG 6 cut(s) 196, 220, 535, 664, 820, 821
AgsI TTSAA 6 cut(s) 301, 348, 383, 410, 664, 731
AjiI CACGTC 1 cut(s) 59
AjnI CCWGG 2 cut(s) 189, 814
AleI CACNNNNGTG 1 cut(s) 641
AluBI AGCT 7 cut(s) 344, 458, 467, 571, 713, 736, 843
AluI AGCT 7 cut(s) 344, 458, 467, 571, 713, 736, 843
Alw26I GTCTC 5 cut(s) 65, 136, 319, 525, 828
AlwI GGATC 5 cut(s) 413, 601, 608, 776, 782
Ama87I CYCGRG 3 cut(s) 528, 597, 752
AoxI GGCC 4 cut(s) 174, 525, 645, 723
ApeKI GCWGC 1 cut(s) 713
ApoI RAATTY 4 cut(s) 378, 410, 581, 746
ArsI GACNNNNNNTTYG 3 cut(s) 43, 75, 827
Asp700I GAANNNNTTC 1 cut(s) 543
Asp718I GGTACC 1 cut(s) 848
AspS9I GGNCC 4 cut(s) 175, 526, 655, 724
AsuC2I CCSGG 2 cut(s) 753, 754
AsuHPI GGTGA 2 cut(s) 378, 836
AsuNHI GCTAGC 1 cut(s) 622
AvaI CYCGRG 3 cut(s) 528, 597, 752
AvaII GGWCC 1 cut(s) 655
BanI GGYRCC 1 cut(s) 848
BbvI GCAGC 1 cut(s) 700
BccI CCATC 1 cut(s) 522
BciT130I CCWGG 2 cut(s) 191, 816
BcnI CCSGG 2 cut(s) 753, 754
BcoDI GTCTC 5 cut(s) 65, 136, 319, 525, 828
BfaI CTAG 2 cut(s) 464, 623
BfmI CTRYAG 1 cut(s) 708
BfuAI ACCTGC 1 cut(s) 583
BisI GCNGC 4 cut(s) 233, 236, 648, 714
BlpI GCTNAGC 1 cut(s) 737
BlsI GCNGC 4 cut(s) 234, 237, 649, 715
Bme1390I CCNGG 4 cut(s) 191, 753, 754, 816
Bme18I GGWCC 1 cut(s) 655
BmeT110I CYCGRG 3 cut(s) 528, 597, 752
BmgBI CACGTC 1 cut(s) 59
BmgT120I GGNCC 4 cut(s) 175, 526, 655, 724
BmiI GGNNCC 2 cut(s) 429, 850
BmrFI CCNGG 4 cut(s) 191, 753, 754, 816
BmrI ACTGGG 1 cut(s) 780
BmsI GCATC 4 cut(s) 410, 491, 609, 817
BmtI GCTAGC 1 cut(s) 626
BmuI ACTGGG 1 cut(s) 780
BpmI CTGGAG 2 cut(s) 393, 852
Bpu1102I GCTNAGC 1 cut(s) 737
BpuMI CCSGG 2 cut(s) 753, 754
BsaHI GRCGYC 2 cut(s) 5, 151
BsaI GGTCTC 2 cut(s) 136, 828
BsaJI CCNNGG 5 cut(s) 189, 309, 422, 752, 814
BsaWI WCCGGW 1 cut(s) 140
BsaXI ACNNNNNCTCC 6 cut(s) 23, 53, 65, 70, 95, 100
Bsc4I CCNNNNNNNGG 6 cut(s) 196, 220, 535, 664, 820, 821
Bse1I ACTGG 2 cut(s) 376, 775
BseBI CCWGG 2 cut(s) 191, 816
BseDI CCNNGG 5 cut(s) 189, 309, 422, 752, 814
BseGI GGATG 1 cut(s) 485
BseLI CCNNNNNNNGG 6 cut(s) 196, 220, 535, 664, 820, 821
BseMII CTCAG 4 cut(s) 260, 306, 443, 728
BseNI ACTGG 2 cut(s) 376, 775
BseRI GAGGAG 3 cut(s) 100, 103, 708
BseXI GCAGC 1 cut(s) 700
Bsh1236I CGCG 1 cut(s) 148
Bsh1285I CGRYCG 2 cut(s) 214, 441
BshFI GGCC 4 cut(s) 176, 527, 647, 725
BshNI GGYRCC 1 cut(s) 848
BsiEI CGRYCG 2 cut(s) 214, 441
BsiHKCI CYCGRG 3 cut(s) 528, 597, 752
BsiSI CCGG 5 cut(s) 141, 154, 207, 722, 753
BslFI GGGAC 1 cut(s) 21
BslI CCNNNNNNNGG 6 cut(s) 196, 220, 535, 664, 820, 821
BsmAI GTCTC 5 cut(s) 65, 136, 319, 525, 828
BsmBI CGTCTC 2 cut(s) 65, 525
BsmFI GGGAC 1 cut(s) 21
BsmI GAATGC 1 cut(s) 222
BsnI GGCC 4 cut(s) 176, 527, 647, 725
Bso31I GGTCTC 2 cut(s) 136, 828
BsoBI CYCGRG 3 cut(s) 528, 597, 752
Bsp1407I TGTACA 1 cut(s) 765
Bsp143I GATC 6 cut(s) 158, 418, 593, 613, 774, 781
Bsp1720I GCTNAGC 1 cut(s) 737
Bsp19I CCATGG 1 cut(s) 309
BspACI CCGC 5 cut(s) 200, 233, 236, 437, 648
BspANI GGCC 4 cut(s) 176, 527, 647, 725
BspCNI CTCAG 4 cut(s) 261, 307, 444, 729
BspFNI CGCG 1 cut(s) 148
BspLI GGNNCC 2 cut(s) 429, 850
BspMI ACCTGC 1 cut(s) 583
BspOI GCTAGC 1 cut(s) 626
BspPI GGATC 5 cut(s) 413, 601, 608, 776, 782
BspT107I GGYRCC 1 cut(s) 848
BspTNI GGTCTC 2 cut(s) 136, 828
BsrGI TGTACA 1 cut(s) 765
BsrI ACTGG 2 cut(s) 376, 775
BssECI CCNNGG 5 cut(s) 189, 309, 422, 752, 814
BssMI GATC 6 cut(s) 158, 418, 593, 613, 774, 781
BssNI GRCGYC 2 cut(s) 5, 151
BssT1I CCWWGG 2 cut(s) 309, 422
Bst2UI CCWGG 2 cut(s) 191, 816
Bst4CI ACNGT 5 cut(s) 35, 169, 367, 790, 839
Bst6I CTCTTC 1 cut(s) 70
BstACI GRCGYC 2 cut(s) 5, 151
BstAUI TGTACA 1 cut(s) 765
BstC8I GCNNGC 3 cut(s) 498, 624, 678
BstDEI CTNAG 4 cut(s) 269, 315, 452, 737
BstDSI CCRYGG 1 cut(s) 309
BstENI CCTNNNNNAGG 1 cut(s) 662
BstF5I GGATG 1 cut(s) 485
BstFNI CGCG 1 cut(s) 148
BstKTI GATC 6 cut(s) 161, 421, 596, 616, 777, 784
BstMAI GTCTC 5 cut(s) 65, 136, 319, 525, 828
BstMBI GATC 6 cut(s) 158, 418, 593, 613, 774, 781
BstMCI CGRYCG 2 cut(s) 214, 441
BstMWI GCNNNNNNNGC 3 cut(s) 464, 713, 722
BstNI CCWGG 2 cut(s) 191, 816
BstNSI RCATGY 1 cut(s) 482
BstSCI CCNGG 4 cut(s) 189, 751, 752, 814
BstSFI CTRYAG 1 cut(s) 708
BstUI CGCG 1 cut(s) 148
BstV1I GCAGC 1 cut(s) 700
BstX2I RGATCY 2 cut(s) 418, 593
BstYI RGATCY 2 cut(s) 418, 593
BsuRI GGCC 4 cut(s) 176, 527, 647, 725
BtgI CCRYGG 1 cut(s) 309
BtrI CACGTC 1 cut(s) 59
BtsCI GGATG 1 cut(s) 485
BtsIMutI CAGTG 3 cut(s) 31, 369, 768
BveI ACCTGC 1 cut(s) 583
Cac8I GCNNGC 3 cut(s) 498, 624, 678
Cfr13I GGNCC 4 cut(s) 175, 526, 655, 724
Cfr9I CCCGGG 1 cut(s) 752
CseI GACGC 1 cut(s) 159
Csp6I GTAC 4 cut(s) 144, 511, 766, 849
CviAII CATG 5 cut(s) 181, 310, 479, 671, 761
CviQI GTAC 4 cut(s) 144, 511, 766, 849
DdeI CTNAG 4 cut(s) 269, 315, 452, 737
DpnI GATC 6 cut(s) 160, 420, 595, 615, 776, 783
DpnII GATC 6 cut(s) 158, 418, 593, 613, 774, 781
EaeI YGGCCR 1 cut(s) 645
Eam1104I CTCTTC 1 cut(s) 70
EarI CTCTTC 1 cut(s) 70
Eco130I CCWWGG 2 cut(s) 309, 422
Eco31I GGTCTC 2 cut(s) 136, 828
Eco47I GGWCC 1 cut(s) 655
Eco57I CTGAAG 1 cut(s) 609
Eco88I CYCGRG 3 cut(s) 528, 597, 752
EcoNI CCTNNNNNAGG 1 cut(s) 662
EcoRI GAATTC 1 cut(s) 410
EcoRII CCWGG 2 cut(s) 189, 814
EcoT14I CCWWGG 2 cut(s) 309, 422
EcoT22I ATGCAT 1 cut(s) 484
ErhI CCWWGG 2 cut(s) 309, 422
Esp3I CGTCTC 2 cut(s) 65, 525
FaeI CATG 5 cut(s) 184, 313, 482, 674, 764
FaqI GGGAC 1 cut(s) 21
FatI CATG 5 cut(s) 180, 309, 478, 670, 760
Fnu4HI GCNGC 4 cut(s) 233, 236, 648, 714
FokI GGATG 1 cut(s) 472
Fsp4HI GCNGC 4 cut(s) 233, 236, 648, 714
FspBI CTAG 2 cut(s) 464, 623
GluI GCNGC 4 cut(s) 233, 236, 648, 714
GsuI CTGGAG 2 cut(s) 393, 852
HaeIII GGCC 4 cut(s) 176, 527, 647, 725
HapII CCGG 5 cut(s) 141, 154, 207, 722, 753
HgaI GACGC 1 cut(s) 159
Hin1I GRCGYC 2 cut(s) 5, 151
Hin1II CATG 5 cut(s) 184, 313, 482, 674, 764
HindIII AAGCTT 1 cut(s) 342
HpaII CCGG 5 cut(s) 141, 154, 207, 722, 753
HphI GGTGA 2 cut(s) 378, 836
Hpy166II GTNNAC 4 cut(s) 17, 655, 766, 768
Hpy188I TCNGA 1 cut(s) 618
Hpy188III TCNNGA 5 cut(s) 69, 268, 348, 587, 597
Hpy8I GTNNAC 4 cut(s) 17, 655, 766, 768
Hpy99I CGWCG 2 cut(s) 10, 153
HpyAV CCTTC 5 cut(s) 166, 190, 584, 658, 737
HpyCH4III ACNGT 5 cut(s) 35, 169, 367, 790, 839
HpyCH4IV ACGT 2 cut(s) 58, 509
HpyCH4V TGCA 3 cut(s) 401, 482, 578
HpyF10VI GCNNNNNNNGC 3 cut(s) 464, 713, 722
HpyF3I CTNAG 4 cut(s) 269, 315, 452, 737
HpySE526I ACGT 2 cut(s) 58, 509
Hsp92I GRCGYC 2 cut(s) 5, 151
Hsp92II CATG 5 cut(s) 184, 313, 482, 674, 764
KpnI GGTACC 1 cut(s) 852
Kzo9I GATC 6 cut(s) 158, 418, 593, 613, 774, 781
LmnI GCTCC 3 cut(s) 427, 667, 721
Lsp1109I GCAGC 1 cut(s) 700
LweI GCATC 4 cut(s) 410, 491, 609, 817
MaeI CTAG 2 cut(s) 464, 623
MaeII ACGT 2 cut(s) 58, 509
MaeIII GTNAC 1 cut(s) 367
MalI GATC 6 cut(s) 160, 420, 595, 615, 776, 783
MboI GATC 6 cut(s) 158, 418, 593, 613, 774, 781
MboII GAAGA 1 cut(s) 57
MflI RGATCY 2 cut(s) 418, 593
MluCI AATT 4 cut(s) 378, 410, 581, 746
MnlI CCTC 8 cut(s) 49, 91, 96, 118, 121, 124, 529, 729
Mph1103I ATGCAT 1 cut(s) 484
MroXI GAANNNNTTC 1 cut(s) 543
MseI TTAA 3 cut(s) 96, 249, 564
MslI CAYNNNNRTG 1 cut(s) 641
MspA1I CMGCKG 1 cut(s) 650
MspI CCGG 5 cut(s) 141, 154, 207, 722, 753
MspR9I CCNGG 4 cut(s) 191, 753, 754, 816
Mva1269I GAATGC 1 cut(s) 222
MvaI CCWGG 2 cut(s) 191, 816
MvnI CGCG 1 cut(s) 148
MwoI GCNNNNNNNGC 3 cut(s) 464, 713, 722
NciI CCSGG 2 cut(s) 753, 754
NcoI CCATGG 1 cut(s) 309
NdeII GATC 6 cut(s) 158, 418, 593, 613, 774, 781
NheI GCTAGC 1 cut(s) 622
NlaIII CATG 5 cut(s) 184, 313, 482, 674, 764
NlaIV GGNNCC 2 cut(s) 429, 850
NmuCI GTSAC 1 cut(s) 367
NsiI ATGCAT 1 cut(s) 484
NspI RCATGY 1 cut(s) 482
OliI CACNNNNGTG 1 cut(s) 641
PaeR7I CTCGAG 1 cut(s) 597
PctI GAATGC 1 cut(s) 222
PdmI GAANNNNTTC 1 cut(s) 543
PkrI GCNGC 4 cut(s) 234, 237, 649, 715
PsiI TTATAA 1 cut(s) 809
Psp6I CCWGG 2 cut(s) 189, 814
PspGI CCWGG 2 cut(s) 189, 814
PspN4I GGNNCC 2 cut(s) 429, 850
PspPI GGNCC 4 cut(s) 175, 526, 655, 724
PsuI RGATCY 2 cut(s) 418, 593
RsaI GTAC 4 cut(s) 145, 512, 767, 850
RsaNI GTAC 4 cut(s) 144, 511, 766, 849
RseI CAYNNNNRTG 1 cut(s) 641
SaqAI TTAA 3 cut(s) 96, 249, 564
SatI GCNGC 4 cut(s) 233, 236, 648, 714
Sau3AI GATC 6 cut(s) 158, 418, 593, 613, 774, 781
Sau96I GGNCC 4 cut(s) 175, 526, 655, 724
ScrFI CCNGG 4 cut(s) 191, 753, 754, 816
SfaNI GCATC 4 cut(s) 410, 491, 609, 817
SfcI CTRYAG 1 cut(s) 708
Sfr274I CTCGAG 1 cut(s) 597
SinI GGWCC 1 cut(s) 655
SlaI CTCGAG 1 cut(s) 597
SmaI CCCGGG 1 cut(s) 754
SmiMI CAYNNNNRTG 1 cut(s) 641
SmlI CTYRAG 1 cut(s) 597
SmoI CTYRAG 1 cut(s) 597
Sse9I AATT 4 cut(s) 378, 410, 581, 746
SsiI CCGC 5 cut(s) 200, 233, 236, 437, 648
SspMI CTAG 2 cut(s) 464, 623
StyD4I CCNGG 4 cut(s) 189, 751, 752, 814
StyI CCWWGG 2 cut(s) 309, 422
TaaI ACNGT 5 cut(s) 35, 169, 367, 790, 839
TaiI ACGT 2 cut(s) 61, 512
TaqI TCGA 1 cut(s) 598
TaqII GACCGA 1 cut(s) 228
TasI AATT 4 cut(s) 378, 410, 581, 746
TatI WGTACW 1 cut(s) 765
TauI GCSGC 3 cut(s) 235, 238, 650
Tru1I TTAA 3 cut(s) 96, 249, 564
Tru9I TTAA 3 cut(s) 96, 249, 564
TscAI CASTG 3 cut(s) 38, 376, 775
TseFI GTSAC 1 cut(s) 367
TseI GCWGC 1 cut(s) 713
Tsp45I GTSAC 1 cut(s) 367
TspDTI ATGAA 3 cut(s) 354, 403, 749
TspGWI ACGGA 1 cut(s) 478
TspMI CCCGGG 1 cut(s) 752
TspRI CASTG 3 cut(s) 38, 376, 775
VpaK11BI GGWCC 1 cut(s) 655
XagI CCTNNNNNAGG 1 cut(s) 662
XapI RAATTY 4 cut(s) 378, 410, 581, 746
XceI RCATGY 1 cut(s) 482
XcmI CCANNNNNNNNNTGG 1 cut(s) 316
XhoI CTCGAG 1 cut(s) 597
XmaI CCCGGG 1 cut(s) 752
XmnI GAANNNNTTC 1 cut(s) 543
XspI CTAG 2 cut(s) 464, 623
Zsp2I ATGCAT 1 cut(s) 484
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.