FvH4_6g12970

Uracil phosphoribosyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0011897
Physical Location & Seq
Reverse (-)
7858481 .. 7861606
3126 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g12970.t2

Sequence Viewer

Length: 852 bp
ATGGCGTCGTGTCGTTTACATTTCCCTCCTCTATCCTGTCCCTCCCAAACGCCACGTTTCTCGTCCCGAAACCCTAGCCCCCATCCTCTCCTACTTAATCTCACTCCCTCCTCTAATCCCCAAAAGGTCTCTTGTTCCGGTACGCGACGCCCGAGATTACTCACCGTCAAGGCCCACATGACCACCGAGGAGAAGGCCGTTTCCGGCGACCGAATGCTGGTGTTTGTGCCGCCGCACCCGTTGATCAAGCATTGGGTTTCAGTCCTGAGAAATGAGCAAACCCCTTGCCCCATTTTCAGAAATGCGATGGCTGAGTTGGGGAGACTCCTTATTTACGAAGCTTCAAGAGATTGGTTGCCTACAGTCACTGGAGAAATTCAATCACCAATGGGTGTTGCATCAGTTGAATTCATAGATCCGAGGGAGCCTGTCTCGGTCGTTCCAATACTGAGAGCTGGTCTTGCTCTTATGGAACATGCATCATCTGTCTTGCCAGCAACAAAAACATACCATCTTGGAATGGCCCGAGACGAGGAAACACTTCTGCCAACAGTATATCTTAACAAGCTACCTGAAAAATTTCCTGAAGGATCTCGAGTATTTCTGTTTGATCCGATGCTAGCAACAGGTGGCACAATAGTGGCCGCTGTGGACCTATTAAAGGAGCATGGGCTTGCCAACAAGCAAATCAAAGTGATATCTGCTGTAGCTGCTCCTCCGGCCCTTCAAAAGCTGAGCGAGAAATTTCCTGGGCTTCATGTCTACGCTGGGATTATTGATCCTACTGTAAATGACAAAGGGTTTATAATCCCTGGACTGGGTGACGCTGGAGACCGTAGCTTTGGTACCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003824 GO:0004845 GO:0004849 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006139 GO:0006206 GO:0006213 GO:0006220 GO:0006221 GO:0006222 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0007154 GO:0008150 GO:0008152 GO:0008655 GO:0009058 GO:0009112 GO:0009116 GO:0009117 GO:0009119 GO:0009123 GO:0009124 GO:0009129 GO:0009130 GO:0009156 GO:0009161 GO:0009163 GO:0009165 GO:0009173 GO:0009174 GO:0009218 GO:0009220 GO:0009259 GO:0009260 GO:0009267 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009605 GO:0009987 GO:0009991 GO:0016036 GO:0016301 GO:0016310 GO:0016740 GO:0016757 GO:0016763 GO:0016772 GO:0018130 GO:0019205 GO:0019206 GO:0019438 GO:0019637 GO:0019693 GO:0031667 GO:0031668 GO:0031669 GO:0032502 GO:0033554 GO:0034404 GO:0034641 GO:0034654 GO:0042455 GO:0042594 GO:0043094 GO:0043097 GO:0043174 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046049 GO:0046131 GO:0046132 GO:0046134 GO:0046390 GO:0046483 GO:0050896 GO:0051716 GO:0055086 GO:0071496 GO:0071704 GO:0072527 GO:0072528 GO:0090407 GO:1901135 GO:1901137 GO:1901293 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901657 GO:1901659
KEGG Pathways
Metabolic & Signaling
ko00240 ko01100 map00240 map01100
Pfam Domains
Protein Families
UPRTase

Protein Analysis

284

Amino Acids

30.82

Weight (kDa)

8.9

Isoelectric Point (pI)

48.4

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
UPRTase PF14681 17 - 224 1.1e-68 Uracil phosphoribosyltransferase
Pribosyltran PF00156 81 - 179 1.9e-11 Phosphoribosyl transferase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011897)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G53900 AT3G53900
fragaria_vesca FvH4_6g12970 FvH4_6g12970
malus_domestica MD04G1136300.v1.1 MD12G1150800.v1.1
prunus_persica Prupe.6G262400_v2.0.a1
pyrus_communis pycom12g14470
rosa_chinensis RchiOBHm_Chr3g0465081
rosa_laevigata RLG00000024657
rosa_multiflora Rmu_sc0004362.1_g000003
rosa_roxburghii Rroxscaffold_6G00415260
rosa_rugosa Rorug03G0075100 Rorug03G0075200
rosa_samantha Rh3BG138900 Rh3CG141000 Rh3CG149300 Rh3DG140100
rosa_wichuraiana Rw3G011360

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 806
Acc65I GGTACC 1 cut(s) 845
AccB1I GGYRCC 1 cut(s) 845
AccI GTMKAC 1 cut(s) 762
AccII CGCG 1 cut(s) 145
AciI CCGC 3 cut(s) 230, 233, 645
AclWI GGATC 4 cut(s) 410, 598, 605, 773
AcoI YGGCCR 1 cut(s) 642
AcsI RAATTY 4 cut(s) 375, 407, 578, 743
AcuI CTGAAG 1 cut(s) 606
AcyI GRCGYC 2 cut(s) 5, 148
AfaI GTAC 2 cut(s) 142, 847
AfiI CCNNNNNNNGG 5 cut(s) 217, 532, 661, 817, 818
AgsI TTSAA 4 cut(s) 345, 380, 407, 728
AjnI CCWGG 2 cut(s) 748, 811
AleI CACNNNNGTG 1 cut(s) 638
AluBI AGCT 6 cut(s) 341, 455, 568, 710, 733, 840
AluI AGCT 6 cut(s) 341, 455, 568, 710, 733, 840
Alw26I GTCTC 5 cut(s) 133, 316, 436, 522, 825
AlwI GGATC 4 cut(s) 410, 598, 605, 773
AlwNI CAGNNNCTG 1 cut(s) 368
Ama87I CYCGRG 3 cut(s) 151, 525, 594
AoxI GGCC 5 cut(s) 171, 195, 522, 642, 720
ApeKI GCWGC 1 cut(s) 710
ApoI RAATTY 4 cut(s) 375, 407, 578, 743
ArsI GACNNNNNNTTYG 1 cut(s) 824
Asp700I GAANNNNTTC 2 cut(s) 540, 579
Asp718I GGTACC 1 cut(s) 845
AspS9I GGNCC 4 cut(s) 172, 523, 652, 721
AsuHPI GGTGA 3 cut(s) 154, 375, 833
AsuNHI GCTAGC 1 cut(s) 619
AvaI CYCGRG 3 cut(s) 151, 525, 594
AvaII GGWCC 1 cut(s) 652
BanI GGYRCC 1 cut(s) 845
BbvI GCAGC 1 cut(s) 697
BccI CCATC 3 cut(s) 90, 301, 519
BceAI ACGGC 1 cut(s) 182
BciT130I CCWGG 2 cut(s) 750, 813
BclI TGATCA 1 cut(s) 243
BcoDI GTCTC 5 cut(s) 133, 316, 436, 522, 825
BfaI CTAG 2 cut(s) 75, 620
BfmI CTRYAG 2 cut(s) 360, 705
BisI GCNGC 4 cut(s) 230, 233, 645, 711
BlpI GCTNAGC 1 cut(s) 734
BlsI GCNGC 4 cut(s) 231, 234, 646, 712
Bme1390I CCNGG 2 cut(s) 750, 813
Bme18I GGWCC 1 cut(s) 652
BmeT110I CYCGRG 3 cut(s) 151, 525, 594
BmgT120I GGNCC 4 cut(s) 172, 523, 652, 721
BmiI GGNNCC 2 cut(s) 426, 847
BmrFI CCNGG 2 cut(s) 750, 813
BmrI ACTGGG 1 cut(s) 827
BmsI GCATC 3 cut(s) 407, 488, 606
BmtI GCTAGC 1 cut(s) 623
BmuI ACTGGG 1 cut(s) 827
BplI GAGNNNNNCTC 2 cut(s) 416, 448
BpmI CTGGAG 2 cut(s) 390, 849
Bpu1102I GCTNAGC 1 cut(s) 734
BsaHI GRCGYC 2 cut(s) 5, 148
BsaI GGTCTC 2 cut(s) 133, 825
BsaJI CCNNGG 4 cut(s) 186, 419, 749, 811
BsaWI WCCGGW 1 cut(s) 137
Bsc4I CCNNNNNNNGG 5 cut(s) 217, 532, 661, 817, 818
Bse1I ACTGG 2 cut(s) 373, 822
BseBI CCWGG 2 cut(s) 750, 813
BseDI CCNNGG 4 cut(s) 186, 419, 749, 811
BseGI GGATG 1 cut(s) 82
BseLI CCNNNNNNNGG 5 cut(s) 217, 532, 661, 817, 818
BseMII CTCAG 4 cut(s) 257, 303, 440, 725
BseNI ACTGG 2 cut(s) 373, 822
BseRI GAGGAG 4 cut(s) 18, 100, 203, 705
BseXI GCAGC 1 cut(s) 697
BseYI CCCAGC 1 cut(s) 767
Bsh1236I CGCG 1 cut(s) 145
Bsh1285I CGRYCG 2 cut(s) 211, 438
BshFI GGCC 5 cut(s) 173, 197, 524, 644, 722
BshNI GGYRCC 1 cut(s) 845
BsiEI CGRYCG 2 cut(s) 211, 438
BsiHKCI CYCGRG 3 cut(s) 151, 525, 594
BsiSI CCGG 3 cut(s) 138, 204, 719
BslFI GGGAC 2 cut(s) 24, 49
BslI CCNNNNNNNGG 5 cut(s) 217, 532, 661, 817, 818
BsmAI GTCTC 5 cut(s) 133, 316, 436, 522, 825
BsmBI CGTCTC 1 cut(s) 522
BsmFI GGGAC 2 cut(s) 24, 49
BsmI GAATGC 1 cut(s) 219
BsnI GGCC 5 cut(s) 173, 197, 524, 644, 722
Bso31I GGTCTC 2 cut(s) 133, 825
BsoBI CYCGRG 3 cut(s) 151, 525, 594
Bsp143I GATC 5 cut(s) 243, 415, 590, 610, 778
Bsp1720I GCTNAGC 1 cut(s) 734
BspACI CCGC 3 cut(s) 230, 233, 645
BspANI GGCC 5 cut(s) 173, 197, 524, 644, 722
BspCNI CTCAG 4 cut(s) 258, 304, 441, 726
BspFNI CGCG 1 cut(s) 145
BspLI GGNNCC 2 cut(s) 426, 847
BspOI GCTAGC 1 cut(s) 623
BspPI GGATC 4 cut(s) 410, 598, 605, 773
BspT107I GGYRCC 1 cut(s) 845
BspTNI GGTCTC 2 cut(s) 133, 825
BsrI ACTGG 2 cut(s) 373, 822
BssECI CCNNGG 4 cut(s) 186, 419, 749, 811
BssMI GATC 5 cut(s) 243, 415, 590, 610, 778
BssNI GRCGYC 2 cut(s) 5, 148
Bst2UI CCWGG 2 cut(s) 750, 813
Bst4CI ACNGT 5 cut(s) 166, 364, 553, 787, 836
BstACI GRCGYC 2 cut(s) 5, 148
BstC8I GCNNGC 3 cut(s) 495, 621, 675
BstDEI CTNAG 4 cut(s) 266, 312, 449, 734
BstENI CCTNNNNNAGG 1 cut(s) 659
BstF5I GGATG 1 cut(s) 82
BstFNI CGCG 1 cut(s) 145
BstKTI GATC 5 cut(s) 246, 418, 593, 613, 781
BstMAI GTCTC 5 cut(s) 133, 316, 436, 522, 825
BstMBI GATC 5 cut(s) 243, 415, 590, 610, 778
BstMCI CGRYCG 2 cut(s) 211, 438
BstMWI GCNNNNNNNGC 3 cut(s) 461, 710, 719
BstNI CCWGG 2 cut(s) 750, 813
BstNSI RCATGY 1 cut(s) 479
BstSCI CCNGG 2 cut(s) 748, 811
BstSFI CTRYAG 2 cut(s) 360, 705
BstUI CGCG 1 cut(s) 145
BstV1I GCAGC 1 cut(s) 697
BstX2I RGATCY 2 cut(s) 415, 590
BstYI RGATCY 2 cut(s) 415, 590
BsuRI GGCC 5 cut(s) 173, 197, 524, 644, 722
BtgZI GCGATG 1 cut(s) 320
BtsCI GGATG 1 cut(s) 82
BtsIMutI CAGTG 1 cut(s) 366
Cac8I GCNNGC 3 cut(s) 495, 621, 675
CaiI CAGNNNCTG 1 cut(s) 368
Cfr13I GGNCC 4 cut(s) 172, 523, 652, 721
CseI GACGC 2 cut(s) 156, 833
Csp6I GTAC 2 cut(s) 141, 846
CviAII CATG 4 cut(s) 178, 476, 668, 758
CviQI GTAC 2 cut(s) 141, 846
DdeI CTNAG 4 cut(s) 266, 312, 449, 734
DpnI GATC 5 cut(s) 245, 417, 592, 612, 780
DpnII GATC 5 cut(s) 243, 415, 590, 610, 778
EaeI YGGCCR 1 cut(s) 642
Eco31I GGTCTC 2 cut(s) 133, 825
Eco32I GATATC 1 cut(s) 699
Eco47I GGWCC 1 cut(s) 652
Eco57I CTGAAG 1 cut(s) 606
Eco88I CYCGRG 3 cut(s) 151, 525, 594
EcoNI CCTNNNNNAGG 1 cut(s) 659
EcoRI GAATTC 1 cut(s) 407
EcoRII CCWGG 2 cut(s) 748, 811
EcoRV GATATC 1 cut(s) 699
EcoT22I ATGCAT 1 cut(s) 481
Esp3I CGTCTC 1 cut(s) 522
FaeI CATG 4 cut(s) 181, 479, 671, 761
FaiI YATR 9 cut(s) 179, 413, 470, 477, 508, 556, 669, 759, 806
FaqI GGGAC 2 cut(s) 24, 49
FatI CATG 4 cut(s) 177, 475, 667, 757
FbaI TGATCA 1 cut(s) 243
FblI GTMKAC 1 cut(s) 762
Fnu4HI GCNGC 4 cut(s) 230, 233, 645, 711
FokI GGATG 1 cut(s) 69
Fsp4HI GCNGC 4 cut(s) 230, 233, 645, 711
FspBI CTAG 2 cut(s) 75, 620
GluI GCNGC 4 cut(s) 230, 233, 645, 711
GsaI CCCAGC 1 cut(s) 771
GsuI CTGGAG 2 cut(s) 390, 849
HaeIII GGCC 5 cut(s) 173, 197, 524, 644, 722
HapII CCGG 3 cut(s) 138, 204, 719
HgaI GACGC 2 cut(s) 156, 833
Hin1I GRCGYC 2 cut(s) 5, 148
Hin1II CATG 4 cut(s) 181, 479, 671, 761
HindIII AAGCTT 1 cut(s) 339
HinfI GANTC 1 cut(s) 324
HpaII CCGG 3 cut(s) 138, 204, 719
HphI GGTGA 3 cut(s) 154, 375, 833
Hpy166II GTNNAC 3 cut(s) 17, 652, 763
Hpy188I TCNGA 3 cut(s) 299, 420, 615
Hpy188III TCNNGA 5 cut(s) 66, 265, 345, 584, 594
Hpy8I GTNNAC 3 cut(s) 17, 652, 763
Hpy99I CGWCG 2 cut(s) 10, 150
HpyAV CCTTC 3 cut(s) 187, 581, 734
HpyCH4III ACNGT 5 cut(s) 166, 364, 553, 787, 836
HpyCH4IV ACGT 1 cut(s) 55
HpyCH4V TGCA 2 cut(s) 398, 479
HpyF10VI GCNNNNNNNGC 3 cut(s) 461, 710, 719
HpyF3I CTNAG 4 cut(s) 266, 312, 449, 734
HpySE526I ACGT 1 cut(s) 55
Hsp92I GRCGYC 2 cut(s) 5, 148
Hsp92II CATG 4 cut(s) 181, 479, 671, 761
KpnI GGTACC 1 cut(s) 849
Ksp22I TGATCA 1 cut(s) 243
Kzo9I GATC 5 cut(s) 243, 415, 590, 610, 778
LmnI GCTCC 3 cut(s) 424, 664, 718
Lsp1109I GCAGC 1 cut(s) 697
LweI GCATC 3 cut(s) 407, 488, 606
MaeI CTAG 2 cut(s) 75, 620
MaeII ACGT 1 cut(s) 55
MaeIII GTNAC 2 cut(s) 364, 821
MalI GATC 5 cut(s) 245, 417, 592, 612, 780
MboI GATC 5 cut(s) 243, 415, 590, 610, 778
MflI RGATCY 2 cut(s) 415, 590
MluCI AATT 4 cut(s) 375, 407, 578, 743
MlyI GAGTC 1 cut(s) 318
Mph1103I ATGCAT 1 cut(s) 481
MroXI GAANNNNTTC 2 cut(s) 540, 579
MseI TTAA 3 cut(s) 96, 561, 659
MslI CAYNNNNRTG 1 cut(s) 638
MspA1I CMGCKG 1 cut(s) 647
MspI CCGG 3 cut(s) 138, 204, 719
MspR9I CCNGG 2 cut(s) 750, 813
Mva1269I GAATGC 1 cut(s) 219
MvaI CCWGG 2 cut(s) 750, 813
MvnI CGCG 1 cut(s) 145
MwoI GCNNNNNNNGC 3 cut(s) 461, 710, 719
NdeII GATC 5 cut(s) 243, 415, 590, 610, 778
NheI GCTAGC 1 cut(s) 619
NlaIII CATG 4 cut(s) 181, 479, 671, 761
NlaIV GGNNCC 2 cut(s) 426, 847
NmuCI GTSAC 2 cut(s) 364, 821
NsiI ATGCAT 1 cut(s) 481
NspI RCATGY 1 cut(s) 479
OliI CACNNNNGTG 1 cut(s) 638
PaeR7I CTCGAG 1 cut(s) 594
PcsI WCGNNNNNNNCGW 1 cut(s) 149
PctI GAATGC 1 cut(s) 219
PdmI GAANNNNTTC 2 cut(s) 540, 579
PkrI GCNGC 4 cut(s) 231, 234, 646, 712
PleI GAGTC 1 cut(s) 318
PpsI GAGTC 1 cut(s) 318
PsiI TTATAA 1 cut(s) 806
Psp6I CCWGG 2 cut(s) 748, 811
PspFI CCCAGC 1 cut(s) 767
PspGI CCWGG 2 cut(s) 748, 811
PspN4I GGNNCC 2 cut(s) 426, 847
PspPI GGNCC 4 cut(s) 172, 523, 652, 721
PstNI CAGNNNCTG 1 cut(s) 368
PsuI RGATCY 2 cut(s) 415, 590
RsaI GTAC 2 cut(s) 142, 847
RsaNI GTAC 2 cut(s) 141, 846
RseI CAYNNNNRTG 1 cut(s) 638
SaqAI TTAA 3 cut(s) 96, 561, 659
SatI GCNGC 4 cut(s) 230, 233, 645, 711
Sau3AI GATC 5 cut(s) 243, 415, 590, 610, 778
Sau96I GGNCC 4 cut(s) 172, 523, 652, 721
SchI GAGTC 1 cut(s) 318
ScrFI CCNGG 2 cut(s) 750, 813
SfaNI GCATC 3 cut(s) 407, 488, 606
SfcI CTRYAG 2 cut(s) 360, 705
Sfr274I CTCGAG 1 cut(s) 594
SinI GGWCC 1 cut(s) 652
SlaI CTCGAG 1 cut(s) 594
SmiMI CAYNNNNRTG 1 cut(s) 638
SmlI CTYRAG 1 cut(s) 594
SmoI CTYRAG 1 cut(s) 594
Sse9I AATT 4 cut(s) 375, 407, 578, 743
SsiI CCGC 3 cut(s) 230, 233, 645
SspMI CTAG 2 cut(s) 75, 620
StyD4I CCNGG 2 cut(s) 748, 811
TaaI ACNGT 5 cut(s) 166, 364, 553, 787, 836
TaiI ACGT 1 cut(s) 58
TaqI TCGA 1 cut(s) 595
TaqII GACCGA 2 cut(s) 225, 424
TasI AATT 4 cut(s) 375, 407, 578, 743
TauI GCSGC 3 cut(s) 232, 235, 647
Tru1I TTAA 3 cut(s) 96, 561, 659
Tru9I TTAA 3 cut(s) 96, 561, 659
TscAI CASTG 1 cut(s) 373
TseFI GTSAC 2 cut(s) 364, 821
TseI GCWGC 1 cut(s) 710
Tsp45I GTSAC 2 cut(s) 364, 821
TspDTI ATGAA 2 cut(s) 400, 746
TspRI CASTG 1 cut(s) 373
VpaK11BI GGWCC 1 cut(s) 652
XagI CCTNNNNNAGG 1 cut(s) 659
XapI RAATTY 4 cut(s) 375, 407, 578, 743
XceI RCATGY 1 cut(s) 479
XhoI CTCGAG 1 cut(s) 594
XmiI GTMKAC 1 cut(s) 762
XmnI GAANNNNTTC 2 cut(s) 540, 579
XspI CTAG 2 cut(s) 75, 620
Zsp2I ATGCAT 1 cut(s) 481
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.