Rmu_sc0004362.1_g000003

Uracil phosphoribosyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0004362.1
OG0011897
Physical Location & Seq
Forward (+)
3663 .. 6389
2727 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0004362.1_g000003.1.cds

Sequence Viewer

Length: 948 bp
atggcgtcgtgtcgtttacatttctctctacactgtccctcccaatcccaaactccacgtctctcttcccgaaaccctacctcccctcccctacttaatctcattccctcctcctctaatccccaaaaggtctcttattccggtgcgcgacgccggagatcacttaccgtgaaggcccacatgaccacccaggagaaggcggtttccggcgaccgaatgctggtctcttattccggtacgcgacgccggagatcacttaccgtgaaggcccacatgaccacccaggagaaggcggtttccggcgaccgaatgctggtctttgtgccgccgcaccctttgattaagcattgggtttcagtcctgagaaatgagcagaccccttgccccattttcaaaaatgccatggctgagttggggagacttcttatttatgaagcttcaagagattggttgcctacggtcactggagaaattcaatcaccaatgggtgttgcatcagttgaattcatagatccaagggagcctgtggcggtcgttccaatactgagagctggtctagctcttatggaacatgcatcatccgtcttgccagcaacaaaaacataccatcttggaatggcccgagacgaggaaacacttctaccaactatatatcttaacaagctacctgcaaaatttcctgaaggatctcgagtatttctgtttgatccgatgctagcaacaggtggcacaatagtggccgctgtggacctattgaaggagcatgggcttgctaacaagcaaatcaaagttatatctgctgtagctgctcctccggcccttcaaaagctgagcgagaaatttcccgggcttcatgtgtacactgggatcattgatcctactgtaaatgataaagggtttataatccctggtctgggtgatgctggagaccgtagctttggtacctga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003824 GO:0004845 GO:0004849 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006139 GO:0006206 GO:0006213 GO:0006220 GO:0006221 GO:0006222 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0007154 GO:0008150 GO:0008152 GO:0008655 GO:0009058 GO:0009112 GO:0009116 GO:0009117 GO:0009119 GO:0009123 GO:0009124 GO:0009129 GO:0009130 GO:0009156 GO:0009161 GO:0009163 GO:0009165 GO:0009173 GO:0009174 GO:0009218 GO:0009220 GO:0009259 GO:0009260 GO:0009267 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009605 GO:0009987 GO:0009991 GO:0016036 GO:0016301 GO:0016310 GO:0016740 GO:0016757 GO:0016763 GO:0016772 GO:0018130 GO:0019205 GO:0019206 GO:0019438 GO:0019637 GO:0019693 GO:0031667 GO:0031668 GO:0031669 GO:0032502 GO:0033554 GO:0034404 GO:0034641 GO:0034654 GO:0042455 GO:0042594 GO:0043094 GO:0043097 GO:0043174 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046049 GO:0046131 GO:0046132 GO:0046134 GO:0046390 GO:0046483 GO:0050896 GO:0051716 GO:0055086 GO:0071496 GO:0071704 GO:0072527 GO:0072528 GO:0090407 GO:1901135 GO:1901137 GO:1901293 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901657 GO:1901659
KEGG Pathways
Metabolic & Signaling
ko00240 ko01100 map00240 map01100
Pfam Domains
Protein Families
UPRTase

Protein Analysis

315

Amino Acids

34.4

Weight (kDa)

9.78

Isoelectric Point (pI)

51.61

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011897)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G53900 AT3G53900
fragaria_vesca FvH4_6g12970 FvH4_6g12970
malus_domestica MD04G1136300.v1.1 MD12G1150800.v1.1
prunus_persica Prupe.6G262400_v2.0.a1
pyrus_communis pycom12g14470
rosa_chinensis RchiOBHm_Chr3g0465081
rosa_laevigata RLG00000024657
rosa_multiflora Rmu_sc0004362.1_g000003
rosa_roxburghii Rroxscaffold_6G00415260
rosa_rugosa Rorug03G0075100 Rorug03G0075200
rosa_samantha Rh3BG138900 Rh3CG141000 Rh3CG149300 Rh3DG140100
rosa_wichuraiana Rw3G011360

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 902
Acc36I ACCTGC 1 cut(s) 676
Acc65I GGTACC 1 cut(s) 941
AccB1I GGYRCC 1 cut(s) 941
AccII CGCG 2 cut(s) 148, 241
AciI CCGC 6 cut(s) 200, 293, 326, 329, 530, 741
AclWI GGATC 5 cut(s) 506, 694, 701, 869, 875
AcoI YGGCCR 1 cut(s) 738
AcsI RAATTY 4 cut(s) 471, 503, 674, 839
AcuI CTGAAG 1 cut(s) 702
AcyI GRCGYC 3 cut(s) 5, 151, 244
AfaI GTAC 3 cut(s) 238, 860, 943
AfiI CCNNNNNNNGG 8 cut(s) 196, 220, 289, 313, 628, 757, 913, 914
AgsI TTSAA 6 cut(s) 394, 441, 476, 503, 757, 824
AjiI CACGTC 1 cut(s) 59
AjnI CCWGG 3 cut(s) 189, 282, 907
AleI CACNNNNGTG 1 cut(s) 734
AluBI AGCT 7 cut(s) 437, 551, 560, 664, 806, 829, 936
AluI AGCT 7 cut(s) 437, 551, 560, 664, 806, 829, 936
Alw26I GTCTC 6 cut(s) 65, 136, 229, 412, 618, 921
AlwI GGATC 5 cut(s) 506, 694, 701, 869, 875
Ama87I CYCGRG 3 cut(s) 621, 690, 845
AoxI GGCC 5 cut(s) 174, 267, 618, 738, 816
ApeKI GCWGC 1 cut(s) 806
ApoI RAATTY 4 cut(s) 471, 503, 674, 839
ArsI GACNNNNNNTTYG 3 cut(s) 43, 75, 920
Asp700I GAANNNNTTC 1 cut(s) 636
Asp718I GGTACC 1 cut(s) 941
AspLEI GCGC 1 cut(s) 148
AspS9I GGNCC 5 cut(s) 175, 268, 619, 748, 817
AsuC2I CCSGG 2 cut(s) 846, 847
AsuHPI GGTGA 2 cut(s) 471, 929
AsuNHI GCTAGC 1 cut(s) 715
AvaI CYCGRG 3 cut(s) 621, 690, 845
AvaII GGWCC 1 cut(s) 748
BanI GGYRCC 1 cut(s) 941
BbvI GCAGC 1 cut(s) 793
BccI CCATC 1 cut(s) 615
BciT130I CCWGG 3 cut(s) 191, 284, 909
BcnI CCSGG 2 cut(s) 846, 847
BcoDI GTCTC 6 cut(s) 65, 136, 229, 412, 618, 921
BfaI CTAG 2 cut(s) 557, 716
BfmI CTRYAG 1 cut(s) 801
BfuAI ACCTGC 1 cut(s) 676
BisI GCNGC 4 cut(s) 326, 329, 741, 807
BlpI GCTNAGC 1 cut(s) 830
BlsI GCNGC 4 cut(s) 327, 330, 742, 808
Bme1390I CCNGG 5 cut(s) 191, 284, 846, 847, 909
Bme18I GGWCC 1 cut(s) 748
BmeT110I CYCGRG 3 cut(s) 621, 690, 845
BmgBI CACGTC 1 cut(s) 59
BmgT120I GGNCC 5 cut(s) 175, 268, 619, 748, 817
BmiI GGNNCC 2 cut(s) 522, 943
BmrFI CCNGG 5 cut(s) 191, 284, 846, 847, 909
BmrI ACTGGG 1 cut(s) 873
BmsI GCATC 4 cut(s) 503, 584, 702, 910
BmtI GCTAGC 1 cut(s) 719
BmuI ACTGGG 1 cut(s) 873
BpmI CTGGAG 2 cut(s) 486, 945
Bpu1102I GCTNAGC 1 cut(s) 830
BpuMI CCSGG 2 cut(s) 846, 847
BsaHI GRCGYC 3 cut(s) 5, 151, 244
BsaI GGTCTC 3 cut(s) 136, 229, 921
BsaJI CCNNGG 6 cut(s) 189, 282, 402, 515, 845, 907
BsaWI WCCGGW 2 cut(s) 140, 233
BsaXI ACNNNNNCTCC 6 cut(s) 23, 53, 65, 70, 95, 100
Bsc4I CCNNNNNNNGG 8 cut(s) 196, 220, 289, 313, 628, 757, 913, 914
Bse1I ACTGG 2 cut(s) 469, 868
BseBI CCWGG 3 cut(s) 191, 284, 909
BseDI CCNNGG 6 cut(s) 189, 282, 402, 515, 845, 907
BseGI GGATG 1 cut(s) 578
BseLI CCNNNNNNNGG 8 cut(s) 196, 220, 289, 313, 628, 757, 913, 914
BseMII CTCAG 4 cut(s) 353, 399, 536, 821
BseNI ACTGG 2 cut(s) 469, 868
BseRI GAGGAG 3 cut(s) 100, 103, 801
BseXI GCAGC 1 cut(s) 793
Bsh1236I CGCG 2 cut(s) 148, 241
Bsh1285I CGRYCG 3 cut(s) 214, 307, 534
BshFI GGCC 5 cut(s) 176, 269, 620, 740, 818
BshNI GGYRCC 1 cut(s) 941
BsiEI CGRYCG 3 cut(s) 214, 307, 534
BsiHKCI CYCGRG 3 cut(s) 621, 690, 845
BsiSI CCGG 8 cut(s) 141, 154, 207, 234, 247, 300, 815, 846
BslFI GGGAC 1 cut(s) 21
BslI CCNNNNNNNGG 8 cut(s) 196, 220, 289, 313, 628, 757, 913, 914
BsmAI GTCTC 6 cut(s) 65, 136, 229, 412, 618, 921
BsmBI CGTCTC 2 cut(s) 65, 618
BsmFI GGGAC 1 cut(s) 21
BsmI GAATGC 2 cut(s) 222, 315
BsnI GGCC 5 cut(s) 176, 269, 620, 740, 818
Bso31I GGTCTC 3 cut(s) 136, 229, 921
BsoBI CYCGRG 3 cut(s) 621, 690, 845
Bsp1407I TGTACA 1 cut(s) 858
Bsp143I GATC 7 cut(s) 158, 251, 511, 686, 706, 867, 874
Bsp1720I GCTNAGC 1 cut(s) 830
Bsp19I CCATGG 1 cut(s) 402
BspACI CCGC 6 cut(s) 200, 293, 326, 329, 530, 741
BspANI GGCC 5 cut(s) 176, 269, 620, 740, 818
BspCNI CTCAG 4 cut(s) 354, 400, 537, 822
BspFNI CGCG 2 cut(s) 148, 241
BspLI GGNNCC 2 cut(s) 522, 943
BspMI ACCTGC 1 cut(s) 676
BspOI GCTAGC 1 cut(s) 719
BspPI GGATC 5 cut(s) 506, 694, 701, 869, 875
BspT107I GGYRCC 1 cut(s) 941
BspTNI GGTCTC 3 cut(s) 136, 229, 921
BsrGI TGTACA 1 cut(s) 858
BsrI ACTGG 2 cut(s) 469, 868
BssECI CCNNGG 6 cut(s) 189, 282, 402, 515, 845, 907
BssMI GATC 7 cut(s) 158, 251, 511, 686, 706, 867, 874
BssNI GRCGYC 3 cut(s) 5, 151, 244
BssT1I CCWWGG 2 cut(s) 402, 515
Bst2UI CCWGG 3 cut(s) 191, 284, 909
Bst4CI ACNGT 6 cut(s) 35, 169, 262, 460, 883, 932
Bst6I CTCTTC 1 cut(s) 70
BstACI GRCGYC 3 cut(s) 5, 151, 244
BstAUI TGTACA 1 cut(s) 858
BstC8I GCNNGC 3 cut(s) 591, 717, 771
BstDEI CTNAG 4 cut(s) 362, 408, 545, 830
BstDSI CCRYGG 1 cut(s) 402
BstENI CCTNNNNNAGG 1 cut(s) 755
BstF5I GGATG 1 cut(s) 578
BstFNI CGCG 2 cut(s) 148, 241
BstHHI GCGC 1 cut(s) 148
BstKTI GATC 7 cut(s) 161, 254, 514, 689, 709, 870, 877
BstMAI GTCTC 6 cut(s) 65, 136, 229, 412, 618, 921
BstMBI GATC 7 cut(s) 158, 251, 511, 686, 706, 867, 874
BstMCI CGRYCG 3 cut(s) 214, 307, 534
BstMWI GCNNNNNNNGC 3 cut(s) 557, 806, 815
BstNI CCWGG 3 cut(s) 191, 284, 909
BstNSI RCATGY 1 cut(s) 575
BstSCI CCNGG 5 cut(s) 189, 282, 844, 845, 907
BstSFI CTRYAG 1 cut(s) 801
BstUI CGCG 2 cut(s) 148, 241
BstV1I GCAGC 1 cut(s) 793
BstX2I RGATCY 2 cut(s) 511, 686
BstYI RGATCY 2 cut(s) 511, 686
BsuRI GGCC 5 cut(s) 176, 269, 620, 740, 818
BtgI CCRYGG 1 cut(s) 402
BtrI CACGTC 1 cut(s) 59
BtsCI GGATG 1 cut(s) 578
BtsIMutI CAGTG 3 cut(s) 31, 462, 861
BveI ACCTGC 1 cut(s) 676
Cac8I GCNNGC 3 cut(s) 591, 717, 771
CfoI GCGC 1 cut(s) 148
Cfr13I GGNCC 5 cut(s) 175, 268, 619, 748, 817
Cfr9I CCCGGG 1 cut(s) 845
CseI GACGC 2 cut(s) 159, 252
Csp6I GTAC 3 cut(s) 237, 859, 942
CviAII CATG 6 cut(s) 181, 274, 403, 572, 764, 854
CviQI GTAC 3 cut(s) 237, 859, 942
DdeI CTNAG 4 cut(s) 362, 408, 545, 830
DpnI GATC 7 cut(s) 160, 253, 513, 688, 708, 869, 876
DpnII GATC 7 cut(s) 158, 251, 511, 686, 706, 867, 874
EaeI YGGCCR 1 cut(s) 738
Eam1104I CTCTTC 1 cut(s) 70
EarI CTCTTC 1 cut(s) 70
Eco130I CCWWGG 2 cut(s) 402, 515
Eco31I GGTCTC 3 cut(s) 136, 229, 921
Eco47I GGWCC 1 cut(s) 748
Eco57I CTGAAG 1 cut(s) 702
Eco88I CYCGRG 3 cut(s) 621, 690, 845
EcoNI CCTNNNNNAGG 1 cut(s) 755
EcoRI GAATTC 1 cut(s) 503
EcoRII CCWGG 3 cut(s) 189, 282, 907
EcoT14I CCWWGG 2 cut(s) 402, 515
EcoT22I ATGCAT 1 cut(s) 577
ErhI CCWWGG 2 cut(s) 402, 515
Esp3I CGTCTC 2 cut(s) 65, 618
FaeI CATG 6 cut(s) 184, 277, 406, 575, 767, 857
FaqI GGGAC 1 cut(s) 21
FatI CATG 6 cut(s) 180, 273, 402, 571, 763, 853
Fnu4HI GCNGC 4 cut(s) 326, 329, 741, 807
FokI GGATG 1 cut(s) 565
Fsp4HI GCNGC 4 cut(s) 326, 329, 741, 807
FspBI CTAG 2 cut(s) 557, 716
GlaI GCGC 1 cut(s) 147
GluI GCNGC 4 cut(s) 326, 329, 741, 807
GsuI CTGGAG 2 cut(s) 486, 945
HaeIII GGCC 5 cut(s) 176, 269, 620, 740, 818
HapII CCGG 8 cut(s) 141, 154, 207, 234, 247, 300, 815, 846
HgaI GACGC 2 cut(s) 159, 252
HhaI GCGC 1 cut(s) 148
Hin1I GRCGYC 3 cut(s) 5, 151, 244
Hin1II CATG 6 cut(s) 184, 277, 406, 575, 767, 857
Hin6I GCGC 1 cut(s) 146
HinP1I GCGC 1 cut(s) 146
HindIII AAGCTT 1 cut(s) 435
HpaII CCGG 8 cut(s) 141, 154, 207, 234, 247, 300, 815, 846
HphI GGTGA 2 cut(s) 471, 929
Hpy166II GTNNAC 4 cut(s) 17, 748, 859, 861
Hpy188I TCNGA 1 cut(s) 711
Hpy188III TCNNGA 5 cut(s) 69, 361, 441, 680, 690
Hpy8I GTNNAC 4 cut(s) 17, 748, 859, 861
Hpy99I CGWCG 3 cut(s) 10, 153, 246
HpyAV CCTTC 7 cut(s) 166, 190, 259, 283, 677, 751, 830
HpyCH4III ACNGT 6 cut(s) 35, 169, 262, 460, 883, 932
HpyCH4IV ACGT 1 cut(s) 58
HpyCH4V TGCA 3 cut(s) 494, 575, 671
HpyF10VI GCNNNNNNNGC 3 cut(s) 557, 806, 815
HpyF3I CTNAG 4 cut(s) 362, 408, 545, 830
HpySE526I ACGT 1 cut(s) 58
Hsp92I GRCGYC 3 cut(s) 5, 151, 244
Hsp92II CATG 6 cut(s) 184, 277, 406, 575, 767, 857
HspAI GCGC 1 cut(s) 146
KpnI GGTACC 1 cut(s) 945
Kzo9I GATC 7 cut(s) 158, 251, 511, 686, 706, 867, 874
LmnI GCTCC 3 cut(s) 520, 760, 814
Lsp1109I GCAGC 1 cut(s) 793
LweI GCATC 4 cut(s) 503, 584, 702, 910
MaeI CTAG 2 cut(s) 557, 716
MaeII ACGT 1 cut(s) 58
MaeIII GTNAC 1 cut(s) 460
MalI GATC 7 cut(s) 160, 253, 513, 688, 708, 869, 876
MboI GATC 7 cut(s) 158, 251, 511, 686, 706, 867, 874
MboII GAAGA 1 cut(s) 57
MflI RGATCY 2 cut(s) 511, 686
MluCI AATT 4 cut(s) 471, 503, 674, 839
MnlI CCTC 8 cut(s) 49, 91, 96, 118, 121, 124, 622, 822
Mph1103I ATGCAT 1 cut(s) 577
MroXI GAANNNNTTC 1 cut(s) 636
MseI TTAA 3 cut(s) 96, 342, 657
MslI CAYNNNNRTG 1 cut(s) 734
MspA1I CMGCKG 1 cut(s) 743
MspI CCGG 8 cut(s) 141, 154, 207, 234, 247, 300, 815, 846
MspR9I CCNGG 5 cut(s) 191, 284, 846, 847, 909
Mva1269I GAATGC 2 cut(s) 222, 315
MvaI CCWGG 3 cut(s) 191, 284, 909
MvnI CGCG 2 cut(s) 148, 241
MwoI GCNNNNNNNGC 3 cut(s) 557, 806, 815
NciI CCSGG 2 cut(s) 846, 847
NcoI CCATGG 1 cut(s) 402
NdeII GATC 7 cut(s) 158, 251, 511, 686, 706, 867, 874
NheI GCTAGC 1 cut(s) 715
NlaIII CATG 6 cut(s) 184, 277, 406, 575, 767, 857
NlaIV GGNNCC 2 cut(s) 522, 943
NmuCI GTSAC 1 cut(s) 460
NsiI ATGCAT 1 cut(s) 577
NspI RCATGY 1 cut(s) 575
OliI CACNNNNGTG 1 cut(s) 734
PaeR7I CTCGAG 1 cut(s) 690
PctI GAATGC 2 cut(s) 222, 315
PdmI GAANNNNTTC 1 cut(s) 636
PkrI GCNGC 4 cut(s) 327, 330, 742, 808
PsiI TTATAA 1 cut(s) 902
Psp6I CCWGG 3 cut(s) 189, 282, 907
PspGI CCWGG 3 cut(s) 189, 282, 907
PspN4I GGNNCC 2 cut(s) 522, 943
PspPI GGNCC 5 cut(s) 175, 268, 619, 748, 817
PsuI RGATCY 2 cut(s) 511, 686
RsaI GTAC 3 cut(s) 238, 860, 943
RsaNI GTAC 3 cut(s) 237, 859, 942
RseI CAYNNNNRTG 1 cut(s) 734
SaqAI TTAA 3 cut(s) 96, 342, 657
SatI GCNGC 4 cut(s) 326, 329, 741, 807
Sau3AI GATC 7 cut(s) 158, 251, 511, 686, 706, 867, 874
Sau96I GGNCC 5 cut(s) 175, 268, 619, 748, 817
ScrFI CCNGG 5 cut(s) 191, 284, 846, 847, 909
SfaNI GCATC 4 cut(s) 503, 584, 702, 910
SfcI CTRYAG 1 cut(s) 801
Sfr274I CTCGAG 1 cut(s) 690
SinI GGWCC 1 cut(s) 748
SlaI CTCGAG 1 cut(s) 690
SmaI CCCGGG 1 cut(s) 847
SmiMI CAYNNNNRTG 1 cut(s) 734
SmlI CTYRAG 1 cut(s) 690
SmoI CTYRAG 1 cut(s) 690
Sse9I AATT 4 cut(s) 471, 503, 674, 839
SsiI CCGC 6 cut(s) 200, 293, 326, 329, 530, 741
SspMI CTAG 2 cut(s) 557, 716
StyD4I CCNGG 5 cut(s) 189, 282, 844, 845, 907
StyI CCWWGG 2 cut(s) 402, 515
TaaI ACNGT 6 cut(s) 35, 169, 262, 460, 883, 932
TaiI ACGT 1 cut(s) 61
TaqI TCGA 1 cut(s) 691
TaqII GACCGA 2 cut(s) 228, 321
TasI AATT 4 cut(s) 471, 503, 674, 839
TatI WGTACW 1 cut(s) 858
TauI GCSGC 3 cut(s) 328, 331, 743
Tru1I TTAA 3 cut(s) 96, 342, 657
Tru9I TTAA 3 cut(s) 96, 342, 657
TscAI CASTG 3 cut(s) 38, 469, 868
TseFI GTSAC 1 cut(s) 460
TseI GCWGC 1 cut(s) 806
Tsp45I GTSAC 1 cut(s) 460
TspDTI ATGAA 3 cut(s) 447, 496, 842
TspGWI ACGGA 1 cut(s) 571
TspMI CCCGGG 1 cut(s) 845
TspRI CASTG 3 cut(s) 38, 469, 868
VpaK11BI GGWCC 1 cut(s) 748
XagI CCTNNNNNAGG 1 cut(s) 755
XapI RAATTY 4 cut(s) 471, 503, 674, 839
XceI RCATGY 1 cut(s) 575
XcmI CCANNNNNNNNNTGG 1 cut(s) 409
XhoI CTCGAG 1 cut(s) 690
XmaI CCCGGG 1 cut(s) 845
XmnI GAANNNNTTC 1 cut(s) 636
XspI CTAG 2 cut(s) 557, 716
Zsp2I ATGCAT 1 cut(s) 577
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.