RLG00000024657

Uracil phosphoribosyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr5
OG0011897
Physical Location & Seq
Forward (+)
37946144 .. 37948630
2487 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000024657

Sequence Viewer

Length: 849 bp
ATGGCGTCGTGTCGTTTACATTTCTCTCTACGATGTCCCTCCCAAACGCCACGTCTCTCTTCCCGAAACCCTACCTCCCCTCCCCTACTTAATCTCATTCCCTCCTCCTCTAATCCCCAAAAGGTCTCTTATTCCGGTACGCGGCGCCGGAGATTACTTACCGTGAAGGCGCATATGACCACCCAGGAGAAGGCGGTTTCAGGCGACCGAATGCTGGTCTTTGTGCCACCGCACCCGTTGATTAAGCATTGGGTTTCAGTCCTGAGAAATGAGCAAACCCCTTGCCCCATTTTCAAAAATGCCATGGCTGAGTTGGGGAGACTTCTTATTTATGAAGCTTCAAGAGATTGGTTGCCTACGGTCACCGGAGAAATTCAATCACCAATGGGTGTTGCATCAGTTGAATTCATAGATCCAAGGGAGCCTGTGGCGGTCGTTCCAATACTGAGAGCTGGTCTAGCTCTTATGGAACATGCATCATCTGTCTTGCCAGCAACAAAAACATACCATCTTGGAATGGCCCGAGACGAGGAAACACTTCTACCAACTATATATCTTAACAAGCTACCTGCAAAATTTCCTGAAGGATCTCGAGTATTTCTGTTTGATCCGATGCTAGCAACAGGTGGCACAATAGTGGCCGCTGTGGACCTATTAAAGGAGCATGGGCTTGCTAACAAGCAAATCAAAGTGATATCTGCGGTAGCTGCTCCTCCGGCCCTTCAAAAGCTGAGCGAGAAATTTCCCGGGCTTCATGTGTACACTGGAATCATTGATCCTACTGTAAATGACAAAGGGTTTATAATCCCTGGTCTGGGTGATGCCGGAGACCGTAGCTTTGGTACCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003824 GO:0004845 GO:0004849 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006139 GO:0006206 GO:0006213 GO:0006220 GO:0006221 GO:0006222 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0007154 GO:0008150 GO:0008152 GO:0008655 GO:0009058 GO:0009112 GO:0009116 GO:0009117 GO:0009119 GO:0009123 GO:0009124 GO:0009129 GO:0009130 GO:0009156 GO:0009161 GO:0009163 GO:0009165 GO:0009173 GO:0009174 GO:0009218 GO:0009220 GO:0009259 GO:0009260 GO:0009267 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009605 GO:0009987 GO:0009991 GO:0016036 GO:0016301 GO:0016310 GO:0016740 GO:0016757 GO:0016763 GO:0016772 GO:0018130 GO:0019205 GO:0019206 GO:0019438 GO:0019637 GO:0019693 GO:0031667 GO:0031668 GO:0031669 GO:0032502 GO:0033554 GO:0034404 GO:0034641 GO:0034654 GO:0042455 GO:0042594 GO:0043094 GO:0043097 GO:0043174 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046049 GO:0046131 GO:0046132 GO:0046134 GO:0046390 GO:0046483 GO:0050896 GO:0051716 GO:0055086 GO:0071496 GO:0071704 GO:0072527 GO:0072528 GO:0090407 GO:1901135 GO:1901137 GO:1901293 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901657 GO:1901659
KEGG Pathways
Metabolic & Signaling
ko00240 ko01100 map00240 map01100
Pfam Domains
Protein Families
UPRTase

Protein Analysis

283

Amino Acids

30.76

Weight (kDa)

9.51

Isoelectric Point (pI)

46.37

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
UPRTase PF14681 75 - 282 2.1e-68 Uracil phosphoribosyltransferase
Pribosyltran PF00156 139 - 237 1.9e-11 Phosphoribosyl transferase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011897)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G53900 AT3G53900
fragaria_vesca FvH4_6g12970 FvH4_6g12970
malus_domestica MD04G1136300.v1.1 MD12G1150800.v1.1
prunus_persica Prupe.6G262400_v2.0.a1
pyrus_communis pycom12g14470
rosa_chinensis RchiOBHm_Chr3g0465081
rosa_laevigata RLG00000024657
rosa_multiflora Rmu_sc0004362.1_g000003
rosa_roxburghii Rroxscaffold_6G00415260
rosa_rugosa Rorug03G0075100 Rorug03G0075200
rosa_samantha Rh3BG138900 Rh3CG141000 Rh3CG149300 Rh3DG140100
rosa_wichuraiana Rw3G011360

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 803
Acc36I ACCTGC 1 cut(s) 577
Acc65I GGTACC 1 cut(s) 842
AccB1I GGYRCC 2 cut(s) 144, 842
AccII CGCG 1 cut(s) 142
AciI CCGC 6 cut(s) 142, 194, 230, 431, 642, 701
AclWI GGATC 4 cut(s) 407, 595, 602, 770
AcoI YGGCCR 1 cut(s) 639
AcsI RAATTY 4 cut(s) 372, 404, 575, 740
AcuI CTGAAG 1 cut(s) 603
AcyI GRCGYC 2 cut(s) 5, 145
AfaI GTAC 3 cut(s) 139, 761, 844
AfiI CCNNNNNNNGG 7 cut(s) 141, 190, 214, 529, 658, 814, 815
AgsI TTSAA 5 cut(s) 295, 342, 377, 404, 725
AjiI CACGTC 1 cut(s) 53
AjnI CCWGG 2 cut(s) 183, 808
AleI CACNNNNGTG 1 cut(s) 635
AluBI AGCT 7 cut(s) 338, 452, 461, 565, 707, 730, 837
AluI AGCT 7 cut(s) 338, 452, 461, 565, 707, 730, 837
Alw26I GTCTC 5 cut(s) 59, 130, 313, 519, 822
AlwI GGATC 4 cut(s) 407, 595, 602, 770
Ama87I CYCGRG 3 cut(s) 522, 591, 746
AoxI GGCC 3 cut(s) 519, 639, 717
ApeKI GCWGC 1 cut(s) 707
ApoI RAATTY 4 cut(s) 372, 404, 575, 740
ArsI GACNNNNNNTTYG 3 cut(s) 37, 69, 821
Asp700I GAANNNNTTC 1 cut(s) 537
Asp718I GGTACC 1 cut(s) 842
AspLEI GCGC 2 cut(s) 147, 172
AspS9I GGNCC 3 cut(s) 520, 649, 718
AsuC2I CCSGG 2 cut(s) 747, 748
AsuHPI GGTGA 3 cut(s) 355, 372, 830
AsuNHI GCTAGC 1 cut(s) 616
AvaI CYCGRG 3 cut(s) 522, 591, 746
AvaII GGWCC 1 cut(s) 649
BanI GGYRCC 2 cut(s) 144, 842
BbvI GCAGC 1 cut(s) 694
BccI CCATC 1 cut(s) 516
BciT130I CCWGG 2 cut(s) 185, 810
BcnI CCSGG 2 cut(s) 747, 748
BcoDI GTCTC 5 cut(s) 59, 130, 313, 519, 822
BfaI CTAG 2 cut(s) 458, 617
BfoI RGCGCY 1 cut(s) 148
BfuAI ACCTGC 1 cut(s) 577
BisI GCNGC 3 cut(s) 143, 642, 708
BlpI GCTNAGC 1 cut(s) 731
BlsI GCNGC 3 cut(s) 144, 643, 709
Bme1390I CCNGG 4 cut(s) 185, 747, 748, 810
Bme18I GGWCC 1 cut(s) 649
BmeT110I CYCGRG 3 cut(s) 522, 591, 746
BmgBI CACGTC 1 cut(s) 53
BmgT120I GGNCC 3 cut(s) 520, 649, 718
BmiI GGNNCC 3 cut(s) 146, 423, 844
BmrFI CCNGG 4 cut(s) 185, 747, 748, 810
BmsI GCATC 4 cut(s) 404, 485, 603, 811
BmtI GCTAGC 1 cut(s) 620
Bpu1102I GCTNAGC 1 cut(s) 731
BpuMI CCSGG 2 cut(s) 747, 748
BsaHI GRCGYC 2 cut(s) 5, 145
BsaI GGTCTC 2 cut(s) 130, 822
BsaJI CCNNGG 5 cut(s) 183, 303, 416, 746, 808
BsaWI WCCGGW 2 cut(s) 134, 365
BsaXI ACNNNNNCTCC 4 cut(s) 59, 64, 89, 94
Bsc4I CCNNNNNNNGG 7 cut(s) 141, 190, 214, 529, 658, 814, 815
Bse1I ACTGG 1 cut(s) 769
BseBI CCWGG 2 cut(s) 185, 810
BseDI CCNNGG 5 cut(s) 183, 303, 416, 746, 808
BseLI CCNNNNNNNGG 7 cut(s) 141, 190, 214, 529, 658, 814, 815
BseMII CTCAG 4 cut(s) 254, 300, 437, 722
BseNI ACTGG 1 cut(s) 769
BseRI GAGGAG 3 cut(s) 94, 97, 702
BseXI GCAGC 1 cut(s) 694
Bsh1236I CGCG 1 cut(s) 142
Bsh1285I CGRYCG 2 cut(s) 208, 435
BshFI GGCC 3 cut(s) 521, 641, 719
BshNI GGYRCC 2 cut(s) 144, 842
BsiEI CGRYCG 2 cut(s) 208, 435
BsiHKCI CYCGRG 3 cut(s) 522, 591, 746
BsiSI CCGG 6 cut(s) 135, 148, 366, 716, 747, 825
BslFI GGGAC 1 cut(s) 21
BslI CCNNNNNNNGG 7 cut(s) 141, 190, 214, 529, 658, 814, 815
BsmAI GTCTC 5 cut(s) 59, 130, 313, 519, 822
BsmBI CGTCTC 2 cut(s) 59, 519
BsmFI GGGAC 1 cut(s) 21
BsmI GAATGC 1 cut(s) 216
BsnI GGCC 3 cut(s) 521, 641, 719
Bso31I GGTCTC 2 cut(s) 130, 822
BsoBI CYCGRG 3 cut(s) 522, 591, 746
Bsp1407I TGTACA 1 cut(s) 759
Bsp143I GATC 4 cut(s) 412, 587, 607, 775
Bsp1720I GCTNAGC 1 cut(s) 731
Bsp19I CCATGG 1 cut(s) 303
BspACI CCGC 6 cut(s) 142, 194, 230, 431, 642, 701
BspANI GGCC 3 cut(s) 521, 641, 719
BspCNI CTCAG 4 cut(s) 255, 301, 438, 723
BspFNI CGCG 1 cut(s) 142
BspLI GGNNCC 3 cut(s) 146, 423, 844
BspMI ACCTGC 1 cut(s) 577
BspOI GCTAGC 1 cut(s) 620
BspPI GGATC 4 cut(s) 407, 595, 602, 770
BspT107I GGYRCC 2 cut(s) 144, 842
BspTNI GGTCTC 2 cut(s) 130, 822
BsrGI TGTACA 1 cut(s) 759
BsrI ACTGG 1 cut(s) 769
BssECI CCNNGG 5 cut(s) 183, 303, 416, 746, 808
BssMI GATC 4 cut(s) 412, 587, 607, 775
BssNI GRCGYC 2 cut(s) 5, 145
BssT1I CCWWGG 2 cut(s) 303, 416
Bst2UI CCWGG 2 cut(s) 185, 810
Bst4CI ACNGT 4 cut(s) 163, 361, 784, 833
Bst6I CTCTTC 1 cut(s) 64
BstACI GRCGYC 2 cut(s) 5, 145
BstAUI TGTACA 1 cut(s) 759
BstC8I GCNNGC 3 cut(s) 492, 618, 672
BstDEI CTNAG 4 cut(s) 263, 309, 446, 731
BstDSI CCRYGG 1 cut(s) 303
BstEII GGTNACC 1 cut(s) 361
BstENI CCTNNNNNAGG 1 cut(s) 656
BstFNI CGCG 1 cut(s) 142
BstH2I RGCGCY 1 cut(s) 148
BstHHI GCGC 2 cut(s) 147, 172
BstKTI GATC 4 cut(s) 415, 590, 610, 778
BstMAI GTCTC 5 cut(s) 59, 130, 313, 519, 822
BstMBI GATC 4 cut(s) 412, 587, 607, 775
BstMCI CGRYCG 2 cut(s) 208, 435
BstMWI GCNNNNNNNGC 3 cut(s) 458, 707, 716
BstNI CCWGG 2 cut(s) 185, 810
BstNSI RCATGY 1 cut(s) 476
BstPI GGTNACC 1 cut(s) 361
BstSCI CCNGG 4 cut(s) 183, 745, 746, 808
BstUI CGCG 1 cut(s) 142
BstV1I GCAGC 1 cut(s) 694
BstX2I RGATCY 2 cut(s) 412, 587
BstYI RGATCY 2 cut(s) 412, 587
BsuRI GGCC 3 cut(s) 521, 641, 719
BtgI CCRYGG 1 cut(s) 303
BtrI CACGTC 1 cut(s) 53
BtsIMutI CAGTG 1 cut(s) 762
BveI ACCTGC 1 cut(s) 577
Cac8I GCNNGC 3 cut(s) 492, 618, 672
CfoI GCGC 2 cut(s) 147, 172
Cfr13I GGNCC 3 cut(s) 520, 649, 718
Cfr9I CCCGGG 1 cut(s) 746
Csp6I GTAC 3 cut(s) 138, 760, 843
CviAII CATG 4 cut(s) 304, 473, 665, 755
CviQI GTAC 3 cut(s) 138, 760, 843
DdeI CTNAG 4 cut(s) 263, 309, 446, 731
DinI GGCGCC 1 cut(s) 146
DpnI GATC 4 cut(s) 414, 589, 609, 777
DpnII GATC 4 cut(s) 412, 587, 607, 775
EaeI YGGCCR 1 cut(s) 639
Eam1104I CTCTTC 1 cut(s) 64
EarI CTCTTC 1 cut(s) 64
Eco130I CCWWGG 2 cut(s) 303, 416
Eco31I GGTCTC 2 cut(s) 130, 822
Eco32I GATATC 1 cut(s) 696
Eco47I GGWCC 1 cut(s) 649
Eco57I CTGAAG 1 cut(s) 603
Eco88I CYCGRG 3 cut(s) 522, 591, 746
Eco91I GGTNACC 1 cut(s) 361
EcoNI CCTNNNNNAGG 1 cut(s) 656
EcoO65I GGTNACC 1 cut(s) 361
EcoRI GAATTC 1 cut(s) 404
EcoRII CCWGG 2 cut(s) 183, 808
EcoRV GATATC 1 cut(s) 696
EcoT14I CCWWGG 2 cut(s) 303, 416
EcoT22I ATGCAT 1 cut(s) 478
EgeI GGCGCC 1 cut(s) 146
EheI GGCGCC 1 cut(s) 146
ErhI CCWWGG 2 cut(s) 303, 416
Esp3I CGTCTC 2 cut(s) 59, 519
FaeI CATG 4 cut(s) 307, 476, 668, 758
FaqI GGGAC 1 cut(s) 21
FatI CATG 4 cut(s) 303, 472, 664, 754
FauNDI CATATG 1 cut(s) 174
Fnu4HI GCNGC 3 cut(s) 143, 642, 708
Fsp4HI GCNGC 3 cut(s) 143, 642, 708
FspBI CTAG 2 cut(s) 458, 617
GlaI GCGC 2 cut(s) 146, 171
GluI GCNGC 3 cut(s) 143, 642, 708
HaeII RGCGCY 1 cut(s) 148
HaeIII GGCC 3 cut(s) 521, 641, 719
HapII CCGG 6 cut(s) 135, 148, 366, 716, 747, 825
HhaI GCGC 2 cut(s) 147, 172
Hin1I GRCGYC 2 cut(s) 5, 145
Hin1II CATG 4 cut(s) 307, 476, 668, 758
Hin6I GCGC 2 cut(s) 145, 170
HinP1I GCGC 2 cut(s) 145, 170
HindIII AAGCTT 1 cut(s) 336
HinfI GANTC 1 cut(s) 768
HpaII CCGG 6 cut(s) 135, 148, 366, 716, 747, 825
HphI GGTGA 3 cut(s) 355, 372, 830
Hpy166II GTNNAC 4 cut(s) 17, 649, 760, 762
Hpy188I TCNGA 1 cut(s) 612
Hpy188III TCNNGA 5 cut(s) 63, 262, 342, 581, 591
Hpy8I GTNNAC 4 cut(s) 17, 649, 760, 762
Hpy99I CGWCG 1 cut(s) 10
HpyAV CCTTC 4 cut(s) 160, 184, 578, 731
HpyCH4III ACNGT 4 cut(s) 163, 361, 784, 833
HpyCH4IV ACGT 1 cut(s) 52
HpyCH4V TGCA 3 cut(s) 395, 476, 572
HpyF10VI GCNNNNNNNGC 3 cut(s) 458, 707, 716
HpyF3I CTNAG 4 cut(s) 263, 309, 446, 731
HpySE526I ACGT 1 cut(s) 52
Hsp92I GRCGYC 2 cut(s) 5, 145
Hsp92II CATG 4 cut(s) 307, 476, 668, 758
HspAI GCGC 2 cut(s) 145, 170
KasI GGCGCC 1 cut(s) 144
KpnI GGTACC 1 cut(s) 846
Kzo9I GATC 4 cut(s) 412, 587, 607, 775
LmnI GCTCC 3 cut(s) 421, 661, 715
Lsp1109I GCAGC 1 cut(s) 694
LweI GCATC 4 cut(s) 404, 485, 603, 811
MaeI CTAG 2 cut(s) 458, 617
MaeII ACGT 1 cut(s) 52
MaeIII GTNAC 1 cut(s) 361
MalI GATC 4 cut(s) 414, 589, 609, 777
MboI GATC 4 cut(s) 412, 587, 607, 775
MboII GAAGA 1 cut(s) 51
MflI RGATCY 2 cut(s) 412, 587
MluCI AATT 4 cut(s) 372, 404, 575, 740
Mly113I GGCGCC 1 cut(s) 145
MnlI CCTC 8 cut(s) 49, 85, 90, 112, 115, 118, 523, 723
Mph1103I ATGCAT 1 cut(s) 478
MroXI GAANNNNTTC 1 cut(s) 537
MseI TTAA 4 cut(s) 90, 243, 558, 656
MslI CAYNNNNRTG 1 cut(s) 635
MspA1I CMGCKG 1 cut(s) 644
MspI CCGG 6 cut(s) 135, 148, 366, 716, 747, 825
MspR9I CCNGG 4 cut(s) 185, 747, 748, 810
Mva1269I GAATGC 1 cut(s) 216
MvaI CCWGG 2 cut(s) 185, 810
MvnI CGCG 1 cut(s) 142
MwoI GCNNNNNNNGC 3 cut(s) 458, 707, 716
NarI GGCGCC 1 cut(s) 145
NciI CCSGG 2 cut(s) 747, 748
NcoI CCATGG 1 cut(s) 303
NdeI CATATG 1 cut(s) 174
NdeII GATC 4 cut(s) 412, 587, 607, 775
NheI GCTAGC 1 cut(s) 616
NlaIII CATG 4 cut(s) 307, 476, 668, 758
NlaIV GGNNCC 3 cut(s) 146, 423, 844
NmuCI GTSAC 1 cut(s) 361
NsiI ATGCAT 1 cut(s) 478
NspI RCATGY 1 cut(s) 476
OliI CACNNNNGTG 1 cut(s) 635
PaeR7I CTCGAG 1 cut(s) 591
PctI GAATGC 1 cut(s) 216
PdmI GAANNNNTTC 1 cut(s) 537
PfeI GAWTC 1 cut(s) 768
PkrI GCNGC 3 cut(s) 144, 643, 709
PluTI GGCGCC 1 cut(s) 148
PsiI TTATAA 1 cut(s) 803
Psp6I CCWGG 2 cut(s) 183, 808
PspEI GGTNACC 1 cut(s) 361
PspGI CCWGG 2 cut(s) 183, 808
PspN4I GGNNCC 3 cut(s) 146, 423, 844
PspPI GGNCC 3 cut(s) 520, 649, 718
PsuI RGATCY 2 cut(s) 412, 587
RsaI GTAC 3 cut(s) 139, 761, 844
RsaNI GTAC 3 cut(s) 138, 760, 843
RseI CAYNNNNRTG 1 cut(s) 635
SaqAI TTAA 4 cut(s) 90, 243, 558, 656
SatI GCNGC 3 cut(s) 143, 642, 708
Sau3AI GATC 4 cut(s) 412, 587, 607, 775
Sau96I GGNCC 3 cut(s) 520, 649, 718
ScrFI CCNGG 4 cut(s) 185, 747, 748, 810
SfaNI GCATC 4 cut(s) 404, 485, 603, 811
SfoI GGCGCC 1 cut(s) 146
Sfr274I CTCGAG 1 cut(s) 591
SinI GGWCC 1 cut(s) 649
SlaI CTCGAG 1 cut(s) 591
SmaI CCCGGG 1 cut(s) 748
SmiMI CAYNNNNRTG 1 cut(s) 635
SmlI CTYRAG 1 cut(s) 591
SmoI CTYRAG 1 cut(s) 591
Sse9I AATT 4 cut(s) 372, 404, 575, 740
SsiI CCGC 6 cut(s) 142, 194, 230, 431, 642, 701
SspDI GGCGCC 1 cut(s) 144
SspMI CTAG 2 cut(s) 458, 617
StyD4I CCNGG 4 cut(s) 183, 745, 746, 808
StyI CCWWGG 2 cut(s) 303, 416
TaaI ACNGT 4 cut(s) 163, 361, 784, 833
TaiI ACGT 1 cut(s) 55
TaqI TCGA 1 cut(s) 592
TaqII GACCGA 1 cut(s) 222
TasI AATT 4 cut(s) 372, 404, 575, 740
TatI WGTACW 1 cut(s) 759
TauI GCSGC 2 cut(s) 145, 644
TfiI GAWTC 1 cut(s) 768
Tru1I TTAA 4 cut(s) 90, 243, 558, 656
Tru9I TTAA 4 cut(s) 90, 243, 558, 656
TscAI CASTG 1 cut(s) 769
TseFI GTSAC 1 cut(s) 361
TseI GCWGC 1 cut(s) 707
Tsp45I GTSAC 1 cut(s) 361
TspDTI ATGAA 3 cut(s) 348, 397, 743
TspMI CCCGGG 1 cut(s) 746
TspRI CASTG 1 cut(s) 769
VpaK11BI GGWCC 1 cut(s) 649
XagI CCTNNNNNAGG 1 cut(s) 656
XapI RAATTY 4 cut(s) 372, 404, 575, 740
XceI RCATGY 1 cut(s) 476
XcmI CCANNNNNNNNNTGG 1 cut(s) 310
XhoI CTCGAG 1 cut(s) 591
XmaI CCCGGG 1 cut(s) 746
XmnI GAANNNNTTC 1 cut(s) 537
XspI CTAG 2 cut(s) 458, 617
Zsp2I ATGCAT 1 cut(s) 478
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.