Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr04

Orthogroup ID

OG0011897

Physical Location & Seq

Genomic Coordinates Forward (+)

22398419 .. 22402036

Gene Structure 3618 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD04G1136300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 870 bp

ATGGCGTGCCGTATTAAGTTCTCTCTCCGGTGTCCTTCCTCCGAAACGCCGCGTTTTGGTTCCACTTGTCGCCTCCAAAACCCTAGCTCCCCTCTCCTACTTAATCTCACTCCCTCCTCTTCGTCTTCTTCGAATCCCAAAAAGATCTCGTATTCCTGTACGCGGCGGCGCAGCCTCGTTGCGGTGAAGTCTGAGATGGCCACGGAGGAGAAAGCAGCTTCCGGGAATAGAATGCTTGTTTTCGTGCCGCCGCACCCGTTGATCAAGCATTGGGTTTCGGTTTTGAGAAATGAGCAAACCCCTTGTCCAATTTTTCGAAATGCCATGGCTGAGTTGGGGAGGCTTCTTATGTATGAAGCTTCAAGAGATTGGCTGCCTACGGTCACAGGAGATATTCAGTCACCAATGGGTGTTGCATCAGTTGAATTCATAGATCCAAGGGAACCTATTTTGGTTGTTCCAATTTTGAGAGCTGGTCTAGCACTTGCAGAACATGCATCGTCAATCTTGCCTGCCACAAAGACGTACCATCTTGGGTTAAGCAGAGATGAGGAGACACTTCTACCAACAGTATATCTGAACAAGTTACCGGACAAATTTCCAGAAGGCTCTCGAGTATTTTTGGTTGATCCTATGCTAGCAACAGGTGGCACAATAGTAGCATCTTTGGATCTTTTAAAGGAACGCGGGGTTAACAACAAGCAAATCAAACTGATATCTTCTGTAGCTGCGCCTCCCGCACTTCAAAAGCTGAGCGAGAAGTTTCCAGGGCTTCATGTATACACTGGAATTATAGATCCTACCGTAAATGAAAAGGGGTTTATAGTCCCTGGACTGGGTGATGCTGGAGACCGCAGCTTTGGTACATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004845 GO:0004849 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006139 GO:0006206 GO:0006213 GO:0006220 GO:0006221 GO:0006222 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0007154 GO:0008150 GO:0008152 GO:0008655 GO:0009058 GO:0009112 GO:0009116 GO:0009117 GO:0009119 GO:0009123 GO:0009124 GO:0009129 GO:0009130 GO:0009156 GO:0009161 GO:0009163 GO:0009165 GO:0009173 GO:0009174 GO:0009218 GO:0009220 GO:0009259 GO:0009260 GO:0009267 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009605 GO:0009987 GO:0009991 GO:0016036 GO:0016301 GO:0016310 GO:0016740 GO:0016757 GO:0016763 GO:0016772 GO:0018130 GO:0019205 GO:0019206 GO:0019438 GO:0019637 GO:0019693 GO:0031667 GO:0031668 GO:0031669 GO:0032502 GO:0033554 GO:0034404 GO:0034641 GO:0034654 GO:0042455 GO:0042594 GO:0043094 GO:0043097 GO:0043174 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046049 GO:0046131 GO:0046132 GO:0046134 GO:0046390 GO:0046483 GO:0050896 GO:0051716 GO:0055086 GO:0071496 GO:0071704 GO:0072527 GO:0072528 GO:0090407 GO:1901135 GO:1901137 GO:1901293 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901657 GO:1901659

KEGG Pathways

Metabolic & Signaling

ko00240 ko01100 map00240 map01100

Pfam Domains

Protein Families

UPRTase

Protein Analysis

290

Amino Acids

31.48

Weight (kDa)

9.22

Isoelectric Point (pI)

55.13

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
UPRTase	PF14681	82 - 289	8.2e-68	Uracil phosphoribosyltransferase
Pribosyltran	PF00156	146 - 245	4.7e-13	Phosphoribosyl transferase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011897)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G53900 AT3G53900
fragaria_vesca	FvH4_6g12970 FvH4_6g12970
malus_domestica	MD04G1136300.v1.1 MD12G1150800.v1.1
prunus_persica	Prupe.6G262400_v2.0.a1
pyrus_communis	pycom12g14470
rosa_chinensis	RchiOBHm_Chr3g0465081
rosa_laevigata	RLG00000024657
rosa_multiflora	Rmu_sc0004362.1_g000003
rosa_roxburghii	Rroxscaffold_6G00415260
rosa_rugosa	Rorug03G0075100 Rorug03G0075200
rosa_samantha	Rh3BG138900 Rh3CG141000 Rh3CG149300 Rh3DG140100
rosa_wichuraiana	Rw3G011360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	780
AccII	CGCG	3 cut(s)	52, 163, 687
AciI	CCGC	9 cut(s)	50, 163, 166, 182, 248, 251, 687, 738, 853
AclWI	GGATC	4 cut(s)	428, 623, 678, 791
AcoI	YGGCCR	1 cut(s)	198
AcsI	RAATTY	2 cut(s)	425, 596
AfaI	GTAC	3 cut(s)	160, 527, 865
AfiI	CCNNNNNNNGG	5 cut(s)	56, 162, 181, 835, 836
AgsI	TTSAA	3 cut(s)	363, 425, 746
AjnI	CCWGG	2 cut(s)	766, 829
AluBI	AGCT	7 cut(s)	87, 218, 359, 473, 728, 751, 858
AluI	AGCT	7 cut(s)	87, 218, 359, 473, 728, 751, 858
Alw26I	GTCTC	2 cut(s)	548, 843
AlwI	GGATC	4 cut(s)	428, 623, 678, 791
Ama87I	CYCGRG	1 cut(s)	612
AoxI	GGCC	1 cut(s)	198
ApeKI	GCWGC	5 cut(s)	171, 215, 373, 728, 855
ApoI	RAATTY	2 cut(s)	425, 596
ArsI	GACNNNNNNTTYG	3 cut(s)	289, 321, 842
AspLEI	GCGC	2 cut(s)	171, 733
AsuC2I	CCSGG	1 cut(s)	223
AsuHPI	GGTGA	3 cut(s)	196, 393, 851
AsuII	TTCGAA	2 cut(s)	131, 316
AsuNHI	GCTAGC	1 cut(s)	637
AvaI	CYCGRG	1 cut(s)	612
BalI	TGGCCA	1 cut(s)	200
BbsI	GAAGAC	1 cut(s)	117
BbvI	GCAGC	4 cut(s)	183, 227, 360, 715
BccI	CCATC	2 cut(s)	190, 537
BciT130I	CCWGG	2 cut(s)	768, 831
BclI	TGATCA	1 cut(s)	261
BcnI	CCSGG	1 cut(s)	223
BcoDI	GTCTC	2 cut(s)	548, 843
BfaI	CTAG	3 cut(s)	84, 479, 638
BfmI	CTRYAG	1 cut(s)	723
BglII	AGATCT	1 cut(s)	144
BlpI	GCTNAGC	1 cut(s)	752
Bme1390I	CCNGG	3 cut(s)	223, 768, 831
BmeT110I	CYCGRG	1 cut(s)	612
BmiI	GGNNCC	2 cut(s)	61, 444
BmrFI	CCNGG	3 cut(s)	223, 768, 831
BmrI	ACTGGG	1 cut(s)	845
BmsI	GCATC	4 cut(s)	425, 506, 671, 832
BmtI	GCTAGC	1 cut(s)	641
BmuI	ACTGGG	1 cut(s)	845
BpiI	GAAGAC	1 cut(s)	117
BpmI	CTGGAG	1 cut(s)	867
Bpu1102I	GCTNAGC	1 cut(s)	752
Bpu14I	TTCGAA	2 cut(s)	131, 316
BpuMI	CCSGG	1 cut(s)	223
BsaI	GGTCTC	1 cut(s)	843
BsaJI	CCNNGG	5 cut(s)	201, 324, 437, 767, 829
BsaWI	WCCGGW	2 cut(s)	27, 589
BsaXI	ACNNNNNCTCC	2 cut(s)	71, 101
Bsc4I	CCNNNNNNNGG	5 cut(s)	56, 162, 181, 835, 836
Bse1I	ACTGG	2 cut(s)	790, 840
BseBI	CCWGG	2 cut(s)	768, 831
BseDI	CCNNGG	5 cut(s)	201, 324, 437, 767, 829
BseLI	CCNNNNNNNGG	5 cut(s)	56, 162, 181, 835, 836
BseMII	CTCAG	3 cut(s)	183, 321, 743
BseNI	ACTGG	2 cut(s)	790, 840
BseRI	GAGGAG	3 cut(s)	106, 221, 566
BseXI	GCAGC	4 cut(s)	183, 227, 360, 715
Bsh1236I	CGCG	3 cut(s)	52, 163, 687
BshFI	GGCC	1 cut(s)	200
BsiHKCI	CYCGRG	1 cut(s)	612
BsiSI	CCGG	3 cut(s)	28, 222, 590
BslFI	GGGAC	1 cut(s)	812
BslI	CCNNNNNNNGG	5 cut(s)	56, 162, 181, 835, 836
BsmAI	GTCTC	2 cut(s)	548, 843
BsmFI	GGGAC	1 cut(s)	812
BsmI	GAATGC	1 cut(s)	237
BsnI	GGCC	1 cut(s)	200
Bso31I	GGTCTC	1 cut(s)	843
BsoBI	CYCGRG	1 cut(s)	612
Bsp119I	TTCGAA	2 cut(s)	131, 316
Bsp143I	GATC	6 cut(s)	144, 261, 433, 628, 670, 796
Bsp1720I	GCTNAGC	1 cut(s)	752
Bsp19I	CCATGG	1 cut(s)	324
BspACI	CCGC	9 cut(s)	50, 163, 166, 182, 248, 251, 687, 738, 853
BspANI	GGCC	1 cut(s)	200
BspCNI	CTCAG	3 cut(s)	184, 322, 744
BspFNI	CGCG	3 cut(s)	52, 163, 687
BspLI	GGNNCC	2 cut(s)	61, 444
BspOI	GCTAGC	1 cut(s)	641
BspPI	GGATC	4 cut(s)	428, 623, 678, 791
BspT104I	TTCGAA	2 cut(s)	131, 316
BspTNI	GGTCTC	1 cut(s)	843
BsrI	ACTGG	2 cut(s)	790, 840
BssECI	CCNNGG	5 cut(s)	201, 324, 437, 767, 829
BssMI	GATC	6 cut(s)	144, 261, 433, 628, 670, 796
BssNAI	GTATAC	1 cut(s)	781
BssT1I	CCWWGG	2 cut(s)	324, 437
Bst1107I	GTATAC	1 cut(s)	781
Bst2UI	CCWGG	2 cut(s)	768, 831
Bst4CI	ACNGT	3 cut(s)	382, 571, 805
Bst6I	CTCTTC	1 cut(s)	124
BstAPI	GCANNNNNTGC	1 cut(s)	494
BstBI	TTCGAA	2 cut(s)	131, 316
BstC8I	GCNNGC	3 cut(s)	7, 513, 639
BstDEI	CTNAG	3 cut(s)	192, 330, 752
BstDSI	CCRYGG	2 cut(s)	201, 324
BstFNI	CGCG	3 cut(s)	52, 163, 687
BstHHI	GCGC	2 cut(s)	171, 733
BstKTI	GATC	6 cut(s)	147, 264, 436, 631, 673, 799
BstMAI	GTCTC	2 cut(s)	548, 843
BstMBI	GATC	6 cut(s)	144, 261, 433, 628, 670, 796
BstMWI	GCNNNNNNNGC	3 cut(s)	479, 494, 737
BstNI	CCWGG	2 cut(s)	768, 831
BstNSI	RCATGY	1 cut(s)	497
BstSCI	CCNGG	3 cut(s)	221, 766, 829
BstSFI	CTRYAG	1 cut(s)	723
BstUI	CGCG	3 cut(s)	52, 163, 687
BstV1I	GCAGC	4 cut(s)	183, 227, 360, 715
BstV2I	GAAGAC	1 cut(s)	117
BstX2I	RGATCY	4 cut(s)	144, 433, 670, 796
BstYI	RGATCY	4 cut(s)	144, 433, 670, 796
BstZ17I	GTATAC	1 cut(s)	781
BsuRI	GGCC	1 cut(s)	200
BtgI	CCRYGG	2 cut(s)	201, 324
BtsIMutI	CAGTG	1 cut(s)	783
Cac8I	GCNNGC	3 cut(s)	7, 513, 639
CfoI	GCGC	2 cut(s)	171, 733
Csp6I	GTAC	3 cut(s)	159, 526, 864
CviAII	CATG	3 cut(s)	325, 494, 776
CviQI	GTAC	3 cut(s)	159, 526, 864
DdeI	CTNAG	3 cut(s)	192, 330, 752
DpnI	GATC	6 cut(s)	146, 263, 435, 630, 672, 798
DpnII	GATC	6 cut(s)	144, 261, 433, 628, 670, 796
DraI	TTTAAA	1 cut(s)	678
EaeI	YGGCCR	1 cut(s)	198
Eam1104I	CTCTTC	1 cut(s)	124
EarI	CTCTTC	1 cut(s)	124
Eco130I	CCWWGG	2 cut(s)	324, 437
Eco31I	GGTCTC	1 cut(s)	843
Eco32I	GATATC	1 cut(s)	717
Eco88I	CYCGRG	1 cut(s)	612
EcoRI	GAATTC	1 cut(s)	425
EcoRII	CCWGG	2 cut(s)	766, 829
EcoRV	GATATC	1 cut(s)	717
EcoT14I	CCWWGG	2 cut(s)	324, 437
EcoT22I	ATGCAT	1 cut(s)	499
ErhI	CCWWGG	2 cut(s)	324, 437
FaeI	CATG	3 cut(s)	328, 497, 779
FaqI	GGGAC	1 cut(s)	812
FatI	CATG	3 cut(s)	324, 493, 775
FauI	CCCGC	2 cut(s)	680, 745
FbaI	TGATCA	1 cut(s)	261
FblI	GTMKAC	1 cut(s)	780
FspBI	CTAG	3 cut(s)	84, 479, 638
GlaI	GCGC	2 cut(s)	170, 732
GsuI	CTGGAG	1 cut(s)	867
HaeIII	GGCC	1 cut(s)	200
HapII	CCGG	3 cut(s)	28, 222, 590
HhaI	GCGC	2 cut(s)	171, 733
Hin1II	CATG	3 cut(s)	328, 497, 779
Hin6I	GCGC	2 cut(s)	169, 731
HinP1I	GCGC	2 cut(s)	169, 731
HincII	GTYRAC	1 cut(s)	694
HindII	GTYRAC	1 cut(s)	694
HindIII	AAGCTT	1 cut(s)	357
HinfI	GANTC	1 cut(s)	133
HpaI	GTTAAC	1 cut(s)	694
HpaII	CCGG	3 cut(s)	28, 222, 590
HphI	GGTGA	3 cut(s)	196, 393, 851
Hpy166II	GTNNAC	2 cut(s)	694, 781
Hpy188I	TCNGA	3 cut(s)	43, 193, 579
Hpy188III	TCNNGA	3 cut(s)	363, 602, 612
Hpy8I	GTNNAC	2 cut(s)	694, 781
HpyAV	CCTTC	2 cut(s)	45, 599
HpyCH4III	ACNGT	3 cut(s)	382, 571, 805
HpyCH4IV	ACGT	1 cut(s)	524
HpyCH4V	TGCA	3 cut(s)	416, 488, 497
HpyF10VI	GCNNNNNNNGC	3 cut(s)	479, 494, 737
HpyF3I	CTNAG	3 cut(s)	192, 330, 752
HpySE526I	ACGT	1 cut(s)	524
Hsp92II	CATG	3 cut(s)	328, 497, 779
HspAI	GCGC	2 cut(s)	169, 731
Ksp22I	TGATCA	1 cut(s)	261
KspAI	GTTAAC	1 cut(s)	694
Kzo9I	GATC	6 cut(s)	144, 261, 433, 628, 670, 796
LmnI	GCTCC	1 cut(s)	92
Lsp1109I	GCAGC	4 cut(s)	183, 227, 360, 715
LweI	GCATC	4 cut(s)	425, 506, 671, 832
MaeI	CTAG	3 cut(s)	84, 479, 638
MaeII	ACGT	1 cut(s)	524
MaeIII	GTNAC	3 cut(s)	382, 399, 585
MalI	GATC	6 cut(s)	146, 263, 435, 630, 672, 798
MboI	GATC	6 cut(s)	144, 261, 433, 628, 670, 796
MboII	GAAGA	4 cut(s)	111, 117, 120, 711
MflI	RGATCY	4 cut(s)	144, 433, 670, 796
MlsI	TGGCCA	1 cut(s)	200
MluCI	AATT	5 cut(s)	309, 425, 462, 596, 789
MluNI	TGGCCA	1 cut(s)	200
Mox20I	TGGCCA	1 cut(s)	200
Mph1103I	ATGCAT	1 cut(s)	499
MscI	TGGCCA	1 cut(s)	200
MseI	TTAA	5 cut(s)	15, 102, 539, 677, 693
Msp20I	TGGCCA	1 cut(s)	200
MspI	CCGG	3 cut(s)	28, 222, 590
MspR9I	CCNGG	3 cut(s)	223, 768, 831
Mva1269I	GAATGC	1 cut(s)	237
MvaI	CCWGG	2 cut(s)	768, 831
MvnI	CGCG	3 cut(s)	52, 163, 687
MwoI	GCNNNNNNNGC	3 cut(s)	479, 494, 737
NciI	CCSGG	1 cut(s)	223
NcoI	CCATGG	1 cut(s)	324
NdeII	GATC	6 cut(s)	144, 261, 433, 628, 670, 796
NheI	GCTAGC	1 cut(s)	637
NlaIII	CATG	3 cut(s)	328, 497, 779
NlaIV	GGNNCC	2 cut(s)	61, 444
NmuCI	GTSAC	2 cut(s)	382, 399
NsiI	ATGCAT	1 cut(s)	499
NspI	RCATGY	1 cut(s)	497
NspV	TTCGAA	2 cut(s)	131, 316
PaeR7I	CTCGAG	1 cut(s)	612
PcsI	WCGNNNNNNNCGW	1 cut(s)	128
PctI	GAATGC	1 cut(s)	237
PfeI	GAWTC	1 cut(s)	133
PfoI	TCCNGGA	1 cut(s)	221
Psp6I	CCWGG	2 cut(s)	766, 829
PspGI	CCWGG	2 cut(s)	766, 829
PspN4I	GGNNCC	2 cut(s)	61, 444
PsuI	RGATCY	4 cut(s)	144, 433, 670, 796
RsaI	GTAC	3 cut(s)	160, 527, 865
RsaNI	GTAC	3 cut(s)	159, 526, 864
SaqAI	TTAA	5 cut(s)	15, 102, 539, 677, 693
Sau3AI	GATC	6 cut(s)	144, 261, 433, 628, 670, 796
ScrFI	CCNGG	3 cut(s)	223, 768, 831
SfaNI	GCATC	4 cut(s)	425, 506, 671, 832
SfcI	CTRYAG	1 cut(s)	723
Sfr274I	CTCGAG	1 cut(s)	612
SfuI	TTCGAA	2 cut(s)	131, 316
SlaI	CTCGAG	1 cut(s)	612
SmlI	CTYRAG	1 cut(s)	612
SmoI	CTYRAG	1 cut(s)	612
Sse9I	AATT	5 cut(s)	309, 425, 462, 596, 789
SsiI	CCGC	9 cut(s)	50, 163, 166, 182, 248, 251, 687, 738, 853
SspMI	CTAG	3 cut(s)	84, 479, 638
StyD4I	CCNGG	3 cut(s)	221, 766, 829
StyI	CCWWGG	2 cut(s)	324, 437
TaaI	ACNGT	3 cut(s)	382, 571, 805
TaiI	ACGT	1 cut(s)	527
TaqI	TCGA	3 cut(s)	131, 316, 613
TasI	AATT	5 cut(s)	309, 425, 462, 596, 789
TauI	GCSGC	5 cut(s)	52, 166, 169, 250, 253
TfiI	GAWTC	1 cut(s)	133
Tru1I	TTAA	5 cut(s)	15, 102, 539, 677, 693
Tru9I	TTAA	5 cut(s)	15, 102, 539, 677, 693
TscAI	CASTG	1 cut(s)	790
TseFI	GTSAC	2 cut(s)	382, 399
TseI	GCWGC	5 cut(s)	171, 215, 373, 728, 855
Tsp45I	GTSAC	2 cut(s)	382, 399
TspDTI	ATGAA	4 cut(s)	369, 418, 764, 825
TspGWI	ACGGA	1 cut(s)	218
TspRI	CASTG	1 cut(s)	790
XapI	RAATTY	2 cut(s)	425, 596
XceI	RCATGY	1 cut(s)	497
XcmI	CCANNNNNNNNNTGG	1 cut(s)	331
XhoI	CTCGAG	1 cut(s)	612
XmiI	GTMKAC	1 cut(s)	780
XspI	CTAG	3 cut(s)	84, 479, 638
Zsp2I	ATGCAT	1 cut(s)	499

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.