Prupe.6G262400_v2.0.a1

Uracil phosphoribosyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp06
OG0011897
Physical Location & Seq
Forward (+)
25247225 .. 25250587
3363 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.6G262400.1

Sequence Viewer

Length: 867 bp
ATGGCGACGTGCCGTATAAAATTCACTCTCCGGTGCCCTTCTTCCGATACGCAGCGTTTCGCGTCCACTTGTCGACTCCCAAACCCTAGCTACCCTCTCCTACTTAATCTCAACCCCGCCTCCTCTTCCAACCCCAAAAAGGTCTCGTGTTCCAGTGCGCGGCGGCGTAGCTTTGGTACTGTGAGGGCTCACATGGCCACGGAGGAGAAACCGGTTTCCGAGGACAGAATGCTTGTATTCGTGCCGCCGCACCCGTTGATCAAGCATTGGGTTTCAGTTTTGAGAAATGAGCAAACTCCTTGTCCCATTTTTCGAAATGCCATGGCTGAGTTGGGGAGGCTTCTTATATATGAAGCTTCAAGAGATTGGCTGCCTACGGTCACAGGAGAAATCCAATCACCGCTTGGTGTCGCATCAGTTGAATTCGTAGATCCAAGGGAACCTATTTCGGTTGTTCCAATTTTAAGAGCTGGTCTAGCTTTGGTGGAACATGCGTCGTCAATCTTGCCAGCAACAAGAACGTACCATCTTGGGATAGGCAGAAATGAGGAGACACTTCAACCAACAGTATATCTGAACAAGTTACCTGACAAATTTCCTGAAGGGTCACGAGTATTTTTGGTTGATCCTATGCTAGCAACAGGTGGCACTATAGTGGCAGCTATGAACCTATTAAAGGACCACGGGGTTGACAACAAGCAAATTAAAGTGATATCTGCTGTTGCTGCCCCTCCAGCCCTGCAAAAGCTGAGCGAGAAGTTTCCAGGGCTTCATGTATACACTGGCATCATTGATCCTATTGTAAATGAAAAAGGGTTCATAATCCCTGGACTGGGTGATGCTGGAGACCGCAGCTTCGGTACATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003824 GO:0004845 GO:0004849 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006139 GO:0006206 GO:0006213 GO:0006220 GO:0006221 GO:0006222 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0007154 GO:0008150 GO:0008152 GO:0008655 GO:0009058 GO:0009112 GO:0009116 GO:0009117 GO:0009119 GO:0009123 GO:0009124 GO:0009129 GO:0009130 GO:0009156 GO:0009161 GO:0009163 GO:0009165 GO:0009173 GO:0009174 GO:0009218 GO:0009220 GO:0009259 GO:0009260 GO:0009267 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009605 GO:0009987 GO:0009991 GO:0016036 GO:0016301 GO:0016310 GO:0016740 GO:0016757 GO:0016763 GO:0016772 GO:0018130 GO:0019205 GO:0019206 GO:0019438 GO:0019637 GO:0019693 GO:0031667 GO:0031668 GO:0031669 GO:0032502 GO:0033554 GO:0034404 GO:0034641 GO:0034654 GO:0042455 GO:0042594 GO:0043094 GO:0043097 GO:0043174 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046049 GO:0046131 GO:0046132 GO:0046134 GO:0046390 GO:0046483 GO:0050896 GO:0051716 GO:0055086 GO:0071496 GO:0071704 GO:0072527 GO:0072528 GO:0090407 GO:1901135 GO:1901137 GO:1901293 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901657 GO:1901659
KEGG Pathways
Metabolic & Signaling
ko00240 ko01100 map00240 map01100
Pfam Domains
Protein Families
UPRTase

Protein Analysis

289

Amino Acids

31.48

Weight (kDa)

9.13

Isoelectric Point (pI)

45.61

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011897)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G53900 AT3G53900
fragaria_vesca FvH4_6g12970 FvH4_6g12970
malus_domestica MD04G1136300.v1.1 MD12G1150800.v1.1
prunus_persica Prupe.6G262400_v2.0.a1
pyrus_communis pycom12g14470
rosa_chinensis RchiOBHm_Chr3g0465081
rosa_laevigata RLG00000024657
rosa_multiflora Rmu_sc0004362.1_g000003
rosa_roxburghii Rroxscaffold_6G00415260
rosa_rugosa Rorug03G0075100 Rorug03G0075200
rosa_samantha Rh3BG138900 Rh3CG141000 Rh3CG149300 Rh3DG140100
rosa_wichuraiana Rw3G011360

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 33
AccI GTMKAC 2 cut(s) 73, 777
AccII CGCG 2 cut(s) 62, 160
AciI CCGC 7 cut(s) 117, 160, 163, 245, 248, 401, 850
AclWI GGATC 3 cut(s) 425, 620, 788
AcoI YGGCCR 1 cut(s) 195
AcsI RAATTY 3 cut(s) 20, 422, 593
AcuI CTGAAG 1 cut(s) 621
AfaI GTAC 3 cut(s) 178, 524, 862
AfiI CCNNNNNNNGG 5 cut(s) 139, 159, 676, 832, 833
AgeI ACCGGT 1 cut(s) 211
AgsI TTSAA 3 cut(s) 360, 422, 560
AjiI CACGTC 1 cut(s) 9
AjnI CCWGG 2 cut(s) 763, 826
AleI CACNNNNGTG 1 cut(s) 653
AluBI AGCT 8 cut(s) 90, 171, 356, 470, 479, 662, 748, 855
AluI AGCT 8 cut(s) 90, 171, 356, 470, 479, 662, 748, 855
Alw26I GTCTC 3 cut(s) 148, 545, 840
AlwI GGATC 3 cut(s) 425, 620, 788
AoxI GGCC 1 cut(s) 195
ApeKI GCWGC 5 cut(s) 52, 370, 659, 725, 852
ApoI RAATTY 3 cut(s) 20, 422, 593
ArsI GACNNNNNNTTYG 3 cut(s) 286, 318, 839
AsiGI ACCGGT 1 cut(s) 211
AspLEI GCGC 1 cut(s) 160
AspS9I GGNCC 1 cut(s) 679
AsuHPI GGTGA 2 cut(s) 390, 848
AsuII TTCGAA 1 cut(s) 313
AsuNHI GCTAGC 1 cut(s) 634
AvaII GGWCC 1 cut(s) 679
BaeGI GKGCMC 1 cut(s) 38
BalI TGGCCA 1 cut(s) 197
BanI GGYRCC 1 cut(s) 33
BanII GRGCYC 1 cut(s) 190
BauI CACGAG 2 cut(s) 145, 609
BbvI GCAGC 4 cut(s) 64, 357, 671, 712
BccI CCATC 1 cut(s) 534
BciT130I CCWGG 2 cut(s) 765, 828
BclI TGATCA 1 cut(s) 258
BcoDI GTCTC 3 cut(s) 148, 545, 840
BfaI CTAG 3 cut(s) 87, 476, 635
BfmI CTRYAG 1 cut(s) 651
BisI GCNGC 9 cut(s) 53, 161, 164, 245, 248, 371, 660, 726, 853
BlpI GCTNAGC 1 cut(s) 749
BlsI GCNGC 9 cut(s) 54, 162, 165, 246, 249, 372, 661, 727, 854
Bme1390I CCNGG 2 cut(s) 765, 828
Bme18I GGWCC 1 cut(s) 679
BmgBI CACGTC 1 cut(s) 9
BmgT120I GGNCC 1 cut(s) 679
BmiI GGNNCC 2 cut(s) 35, 441
BmrFI CCNGG 2 cut(s) 765, 828
BmrI ACTGGG 1 cut(s) 842
BmsI GCATC 3 cut(s) 422, 795, 829
BmtI GCTAGC 1 cut(s) 638
BmuI ACTGGG 1 cut(s) 842
BpmI CTGGAG 2 cut(s) 717, 864
Bpu1102I GCTNAGC 1 cut(s) 749
Bpu14I TTCGAA 1 cut(s) 313
BsaI GGTCTC 2 cut(s) 148, 840
BsaJI CCNNGG 7 cut(s) 198, 219, 321, 434, 682, 764, 826
BsaWI WCCGGW 2 cut(s) 30, 211
BsaXI ACNNNNNCTCC 2 cut(s) 104, 134
Bsc4I CCNNNNNNNGG 5 cut(s) 139, 159, 676, 832, 833
Bse118I RCCGGY 1 cut(s) 211
Bse1I ACTGG 3 cut(s) 153, 787, 837
BseBI CCWGG 2 cut(s) 765, 828
BseDI CCNNGG 7 cut(s) 198, 219, 321, 434, 682, 764, 826
BseLI CCNNNNNNNGG 5 cut(s) 139, 159, 676, 832, 833
BseMII CTCAG 2 cut(s) 318, 740
BseNI ACTGG 3 cut(s) 153, 787, 837
BseRI GAGGAG 3 cut(s) 112, 218, 563
BseSI GKGCMC 1 cut(s) 38
BseXI GCAGC 4 cut(s) 64, 357, 671, 712
Bsh1236I CGCG 2 cut(s) 62, 160
BshFI GGCC 1 cut(s) 197
BshNI GGYRCC 1 cut(s) 33
BshTI ACCGGT 1 cut(s) 211
BsiSI CCGG 2 cut(s) 31, 212
BslFI GGGAC 1 cut(s) 288
BslI CCNNNNNNNGG 5 cut(s) 139, 159, 676, 832, 833
BsmAI GTCTC 3 cut(s) 148, 545, 840
BsmFI GGGAC 1 cut(s) 288
BsmI GAATGC 1 cut(s) 234
BsnI GGCC 1 cut(s) 197
Bso31I GGTCTC 2 cut(s) 148, 840
Bsp119I TTCGAA 1 cut(s) 313
Bsp1286I GDGCHC 2 cut(s) 38, 190
Bsp143I GATC 4 cut(s) 258, 430, 625, 793
Bsp1720I GCTNAGC 1 cut(s) 749
Bsp19I CCATGG 1 cut(s) 321
BspACI CCGC 7 cut(s) 117, 160, 163, 245, 248, 401, 850
BspANI GGCC 1 cut(s) 197
BspCNI CTCAG 2 cut(s) 319, 741
BspFNI CGCG 2 cut(s) 62, 160
BspLI GGNNCC 2 cut(s) 35, 441
BspOI GCTAGC 1 cut(s) 638
BspPI GGATC 3 cut(s) 425, 620, 788
BspT104I TTCGAA 1 cut(s) 313
BspT107I GGYRCC 1 cut(s) 33
BspTNI GGTCTC 2 cut(s) 148, 840
BsrFI RCCGGY 1 cut(s) 211
BsrI ACTGG 3 cut(s) 153, 787, 837
BssAI RCCGGY 1 cut(s) 211
BssECI CCNNGG 7 cut(s) 198, 219, 321, 434, 682, 764, 826
BssMI GATC 4 cut(s) 258, 430, 625, 793
BssNAI GTATAC 1 cut(s) 778
BssSI CACGAG 2 cut(s) 145, 609
BssT1I CCWWGG 2 cut(s) 321, 434
Bst1107I GTATAC 1 cut(s) 778
Bst2BI CACGAG 2 cut(s) 145, 609
Bst2UI CCWGG 2 cut(s) 765, 828
Bst4CI ACNGT 3 cut(s) 181, 379, 568
Bst6I CTCTTC 1 cut(s) 130
BstBI TTCGAA 1 cut(s) 313
BstC8I GCNNGC 2 cut(s) 510, 636
BstDEI CTNAG 2 cut(s) 327, 749
BstDSI CCRYGG 3 cut(s) 198, 321, 682
BstENI CCTNNNNNAGG 1 cut(s) 674
BstFNI CGCG 2 cut(s) 62, 160
BstHHI GCGC 1 cut(s) 160
BstKTI GATC 4 cut(s) 261, 433, 628, 796
BstMAI GTCTC 3 cut(s) 148, 545, 840
BstMBI GATC 4 cut(s) 258, 430, 625, 793
BstMWI GCNNNNNNNGC 4 cut(s) 194, 476, 725, 734
BstNI CCWGG 2 cut(s) 765, 828
BstNSI RCATGY 1 cut(s) 494
BstSCI CCNGG 2 cut(s) 763, 826
BstSFI CTRYAG 1 cut(s) 651
BstSLI GKGCMC 1 cut(s) 38
BstUI CGCG 2 cut(s) 62, 160
BstV1I GCAGC 4 cut(s) 64, 357, 671, 712
BstX2I RGATCY 1 cut(s) 430
BstYI RGATCY 1 cut(s) 430
BstZ17I GTATAC 1 cut(s) 778
BsuRI GGCC 1 cut(s) 197
BtgI CCRYGG 3 cut(s) 198, 321, 682
BtrI CACGTC 1 cut(s) 9
BtsIMutI CAGTG 2 cut(s) 160, 780
Cac8I GCNNGC 2 cut(s) 510, 636
CfoI GCGC 1 cut(s) 160
Cfr10I RCCGGY 1 cut(s) 211
Cfr13I GGNCC 1 cut(s) 679
CseI GACGC 2 cut(s) 51, 483
Csp6I GTAC 3 cut(s) 177, 523, 861
CspAI ACCGGT 1 cut(s) 211
CviAII CATG 5 cut(s) 193, 322, 491, 773, 864
CviQI GTAC 3 cut(s) 177, 523, 861
DdeI CTNAG 2 cut(s) 327, 749
DpnI GATC 4 cut(s) 260, 432, 627, 795
DpnII GATC 4 cut(s) 258, 430, 625, 793
EaeI YGGCCR 1 cut(s) 195
Eam1104I CTCTTC 1 cut(s) 130
EarI CTCTTC 1 cut(s) 130
Eco130I CCWWGG 2 cut(s) 321, 434
Eco24I GRGCYC 1 cut(s) 190
Eco31I GGTCTC 2 cut(s) 148, 840
Eco32I GATATC 1 cut(s) 714
Eco47I GGWCC 1 cut(s) 679
Eco57I CTGAAG 1 cut(s) 621
EcoNI CCTNNNNNAGG 1 cut(s) 674
EcoRI GAATTC 1 cut(s) 422
EcoRII CCWGG 2 cut(s) 763, 826
EcoRV GATATC 1 cut(s) 714
EcoT14I CCWWGG 2 cut(s) 321, 434
EcoT38I GRGCYC 1 cut(s) 190
ErhI CCWWGG 2 cut(s) 321, 434
FaeI CATG 5 cut(s) 196, 325, 494, 776, 867
FaqI GGGAC 1 cut(s) 288
FatI CATG 5 cut(s) 192, 321, 490, 772, 863
FauI CCCGC 1 cut(s) 124
FbaI TGATCA 1 cut(s) 258
FblI GTMKAC 2 cut(s) 73, 777
Fnu4HI GCNGC 9 cut(s) 53, 161, 164, 245, 248, 371, 660, 726, 853
FriOI GRGCYC 1 cut(s) 190
Fsp4HI GCNGC 9 cut(s) 53, 161, 164, 245, 248, 371, 660, 726, 853
FspBI CTAG 3 cut(s) 87, 476, 635
GlaI GCGC 1 cut(s) 159
GluI GCNGC 9 cut(s) 53, 161, 164, 245, 248, 371, 660, 726, 853
GsuI CTGGAG 2 cut(s) 717, 864
HaeIII GGCC 1 cut(s) 197
HapII CCGG 2 cut(s) 31, 212
HgaI GACGC 2 cut(s) 51, 483
HhaI GCGC 1 cut(s) 160
Hin1II CATG 5 cut(s) 196, 325, 494, 776, 867
Hin6I GCGC 1 cut(s) 158
HinP1I GCGC 1 cut(s) 158
HincII GTYRAC 2 cut(s) 74, 691
HindII GTYRAC 2 cut(s) 74, 691
HindIII AAGCTT 1 cut(s) 354
HinfI GANTC 1 cut(s) 75
HpaII CCGG 2 cut(s) 31, 212
HphI GGTGA 2 cut(s) 390, 848
Hpy166II GTNNAC 4 cut(s) 66, 74, 691, 778
Hpy188I TCNGA 3 cut(s) 46, 220, 576
Hpy188III TCNNGA 3 cut(s) 360, 599, 609
Hpy8I GTNNAC 4 cut(s) 66, 74, 691, 778
Hpy99I CGWCG 2 cut(s) 10, 499
HpyAV CCTTC 2 cut(s) 48, 596
HpyCH4III ACNGT 3 cut(s) 181, 379, 568
HpyCH4IV ACGT 2 cut(s) 8, 521
HpyCH4V TGCA 1 cut(s) 742
HpyF10VI GCNNNNNNNGC 4 cut(s) 194, 476, 725, 734
HpyF3I CTNAG 2 cut(s) 327, 749
HpySE526I ACGT 2 cut(s) 8, 521
Hsp92II CATG 5 cut(s) 196, 325, 494, 776, 867
HspAI GCGC 1 cut(s) 158
Ksp22I TGATCA 1 cut(s) 258
Kzo9I GATC 4 cut(s) 258, 430, 625, 793
Lsp1109I GCAGC 4 cut(s) 64, 357, 671, 712
LweI GCATC 3 cut(s) 422, 795, 829
MaeI CTAG 3 cut(s) 87, 476, 635
MaeII ACGT 2 cut(s) 8, 521
MaeIII GTNAC 3 cut(s) 379, 582, 606
MalI GATC 4 cut(s) 260, 432, 627, 795
MboI GATC 4 cut(s) 258, 430, 625, 793
MboII GAAGA 2 cut(s) 33, 117
MflI RGATCY 1 cut(s) 430
MhlI GDGCHC 2 cut(s) 38, 190
MlsI TGGCCA 1 cut(s) 197
MluCI AATT 5 cut(s) 20, 422, 459, 593, 702
MluNI TGGCCA 1 cut(s) 197
MlyI GAGTC 1 cut(s) 69
MmeI TCCRAC 1 cut(s) 153
MnlI CCTC 9 cut(s) 105, 130, 133, 177, 196, 214, 330, 541, 741
Mox20I TGGCCA 1 cut(s) 197
MscI TGGCCA 1 cut(s) 197
MseI TTAA 4 cut(s) 105, 464, 674, 705
MslI CAYNNNNRTG 1 cut(s) 653
Msp20I TGGCCA 1 cut(s) 197
MspI CCGG 2 cut(s) 31, 212
MspR9I CCNGG 2 cut(s) 765, 828
Mva1269I GAATGC 1 cut(s) 234
MvaI CCWGG 2 cut(s) 765, 828
MvnI CGCG 2 cut(s) 62, 160
MwoI GCNNNNNNNGC 4 cut(s) 194, 476, 725, 734
NcoI CCATGG 1 cut(s) 321
NdeII GATC 4 cut(s) 258, 430, 625, 793
NheI GCTAGC 1 cut(s) 634
NlaIII CATG 5 cut(s) 196, 325, 494, 776, 867
NlaIV GGNNCC 2 cut(s) 35, 441
NmuCI GTSAC 2 cut(s) 379, 606
NspI RCATGY 1 cut(s) 494
NspV TTCGAA 1 cut(s) 313
OliI CACNNNNGTG 1 cut(s) 653
PctI GAATGC 1 cut(s) 234
PinAI ACCGGT 1 cut(s) 211
PkrI GCNGC 9 cut(s) 54, 162, 165, 246, 249, 372, 661, 727, 854
PleI GAGTC 1 cut(s) 69
PpsI GAGTC 1 cut(s) 69
Psp6I CCWGG 2 cut(s) 763, 826
PspGI CCWGG 2 cut(s) 763, 826
PspN4I GGNNCC 2 cut(s) 35, 441
PspPI GGNCC 1 cut(s) 679
PsuI RGATCY 1 cut(s) 430
RsaI GTAC 3 cut(s) 178, 524, 862
RsaNI GTAC 3 cut(s) 177, 523, 861
RseI CAYNNNNRTG 1 cut(s) 653
SalI GTCGAC 1 cut(s) 72
SaqAI TTAA 4 cut(s) 105, 464, 674, 705
SatI GCNGC 9 cut(s) 53, 161, 164, 245, 248, 371, 660, 726, 853
Sau3AI GATC 4 cut(s) 258, 430, 625, 793
Sau96I GGNCC 1 cut(s) 679
SchI GAGTC 1 cut(s) 69
ScrFI CCNGG 2 cut(s) 765, 828
SduI GDGCHC 2 cut(s) 38, 190
SfaNI GCATC 3 cut(s) 422, 795, 829
SfcI CTRYAG 1 cut(s) 651
SfuI TTCGAA 1 cut(s) 313
SinI GGWCC 1 cut(s) 679
SmiMI CAYNNNNRTG 1 cut(s) 653
Sse9I AATT 5 cut(s) 20, 422, 459, 593, 702
SsiI CCGC 7 cut(s) 117, 160, 163, 245, 248, 401, 850
SspMI CTAG 3 cut(s) 87, 476, 635
StyD4I CCNGG 2 cut(s) 763, 826
StyI CCWWGG 2 cut(s) 321, 434
TaaI ACNGT 3 cut(s) 181, 379, 568
TaiI ACGT 2 cut(s) 11, 524
TaqI TCGA 2 cut(s) 73, 313
TasI AATT 5 cut(s) 20, 422, 459, 593, 702
TauI GCSGC 4 cut(s) 163, 166, 247, 250
Tru1I TTAA 4 cut(s) 105, 464, 674, 705
Tru9I TTAA 4 cut(s) 105, 464, 674, 705
TscAI CASTG 2 cut(s) 160, 787
TseFI GTSAC 2 cut(s) 379, 606
TseI GCWGC 5 cut(s) 52, 370, 659, 725, 852
Tsp45I GTSAC 2 cut(s) 379, 606
TspDTI ATGAA 5 cut(s) 366, 680, 761, 808, 822
TspGWI ACGGA 1 cut(s) 215
TspRI CASTG 2 cut(s) 160, 787
VpaK11BI GGWCC 1 cut(s) 679
XagI CCTNNNNNAGG 1 cut(s) 674
XapI RAATTY 3 cut(s) 20, 422, 593
XceI RCATGY 1 cut(s) 494
XcmI CCANNNNNNNNNTGG 2 cut(s) 328, 401
XmiI GTMKAC 2 cut(s) 73, 777
XspI CTAG 3 cut(s) 87, 476, 635
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.