AT3G54210

Belongs to the bacterial ribosomal protein bL17 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0015209
Physical Location & Seq
Reverse (-)
20067540 .. 20068614
1075 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G54210.1

Sequence Viewer

Length: 636 bp
ATGGCGATTCCAATGTCCATGGCAATGGCGACTCCTACAGATTCCGTGAGCAGAGTCTGGAGTATGTCTTCTCTCAAATCAGCTCTTCCCTCCACCGCATCACTCCGATTACCTTCCTCGTCTTCTCGCCGTCCGGTTACTCTTCGTCTCCCAATCTCTTCTCCTTCACTCCCATCTTTCTCCGGTCTCTCTCCGGTCAATCCTCTCCTCTCAATCGGACTTCCAGATTGGCAAAGCTTTGAGAATGGATTCAAAATTGTTGACGGTGGTGGTCGTATCTACGCGATGAGACACGGACGACGTGTTCCGAAGCTGAACAGACCACCGGACCAGCGCAAAGCTCTTCTGCGAGGACTCACGACTCAGCTTCTTAAGCATGGGAGAATCAAGACGACTCGAGCTAGAGCTAGTGCGATGAGGAAGTTCGTTGACAAGATGATTACATTGGCTAAAGACGGTTCGTTGCACAAGCGAAGACAAGCCTTGGGATATATCTACGAGAAACAGATTGTTCACGCTCTGTTTGCTGAGGTTCCTGATAGATACGGTGAGAGAAACGGTGGATACACGAGGATCATCAGAACTCTTCCAAGGAGAGGTGATAATGCTCCAATGGCTTACATTGAGCTTGTCTAA

Protein Analysis

211

Amino Acids

23.48

Weight (kDa)

11.38

Isoelectric Point (pI)

57.24

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribosomal_L17 PF01196 115 - 211 1.3e-37 Ribosomal protein L17
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0015209)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G54210
fragaria_vesca FvH4_6g09150
malus_domestica MD12G1195700.v1.1
prunus_persica Prupe.6G300200_v2.0.a1
pyrus_communis pycom12g18190
rosa_chinensis RchiOBHm_Chr3g0459361
rosa_laevigata RLG00000025087
rosa_multiflora Rmu_sc0006944.1_g000001
rosa_roxburghii Rroxscaffold_6G00420230
rosa_rugosa Rorug03G0035800.1 Rorug03G0036200
rosa_samantha Rh3AG093800 Rh3BG096700 Rh3CG097900 Rh3DG097400
rosa_wichuraiana Rw3G008070

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 284
AciI CCGC 1 cut(s) 96
AclWI GGATC 1 cut(s) 581
AfiI CCNNNNNNNGG 1 cut(s) 596
AflII CTTAAG 1 cut(s) 371
AflIII ACRYGT 1 cut(s) 301
AgsI TTSAA 1 cut(s) 253
AjiI CACGTC 1 cut(s) 302
AloI GAACNNNNNNTCC 2 cut(s) 288, 320
AluBI AGCT 8 cut(s) 83, 237, 313, 341, 367, 401, 407, 628
AluI AGCT 8 cut(s) 83, 237, 313, 341, 367, 401, 407, 628
Alw26I GTCTC 3 cut(s) 152, 191, 283
AlwI GGATC 1 cut(s) 581
AlwNI CAGNNNCTG 1 cut(s) 57
Ama87I CYCGRG 1 cut(s) 396
Asp700I GAANNNNTTC 1 cut(s) 248
AspLEI GCGC 1 cut(s) 336
AspS9I GGNCC 1 cut(s) 328
AsuHPI GGTGA 2 cut(s) 560, 611
AvaI CYCGRG 1 cut(s) 396
AvaII GGWCC 1 cut(s) 328
BauI CACGAG 1 cut(s) 568
BbsI GAAGAC 3 cut(s) 60, 114, 481
BbvCI CCTCAGC 1 cut(s) 528
BccI CCATC 1 cut(s) 181
BceAI ACGGC 1 cut(s) 114
BciVI GTATCC 1 cut(s) 557
BcoDI GTCTC 3 cut(s) 152, 191, 283
BfaI CTAG 2 cut(s) 402, 408
BfmI CTRYAG 1 cut(s) 36
BfrI CTTAAG 1 cut(s) 371
BfuI GTATCC 1 cut(s) 557
Bme18I GGWCC 1 cut(s) 328
BmeT110I CYCGRG 1 cut(s) 396
BmgBI CACGTC 1 cut(s) 302
BmgT120I GGNCC 1 cut(s) 328
BmiI GGNNCC 1 cut(s) 534
BmsI GCATC 1 cut(s) 107
BpiI GAAGAC 3 cut(s) 60, 114, 481
BpmI CTGGAG 1 cut(s) 79
Bpu10I CCTNAGC 1 cut(s) 528
BsaI GGTCTC 1 cut(s) 191
BsaJI CCNNGG 3 cut(s) 18, 483, 590
BsaWI WCCGGW 4 cut(s) 133, 182, 193, 325
Bsc4I CCNNNNNNNGG 1 cut(s) 596
Bse3DI GCAATG 1 cut(s) 30
BseDI CCNNGG 3 cut(s) 18, 483, 590
BseLI CCNNNNNNNGG 1 cut(s) 596
BseMI GCAATG 1 cut(s) 30
BseMII CTCAG 2 cut(s) 377, 519
BseRI GAGGAG 1 cut(s) 197
Bsh1236I CGCG 1 cut(s) 284
BsiHKCI CYCGRG 1 cut(s) 396
BsiSI CCGG 4 cut(s) 134, 183, 194, 326
BslI CCNNNNNNNGG 1 cut(s) 596
BsmAI GTCTC 3 cut(s) 152, 191, 283
BsmBI CGTCTC 1 cut(s) 152
Bso31I GGTCTC 1 cut(s) 191
BsoBI CYCGRG 1 cut(s) 396
Bsp143I GATC 1 cut(s) 573
Bsp19I CCATGG 1 cut(s) 18
BspACI CCGC 1 cut(s) 96
BspCNI CTCAG 2 cut(s) 376, 520
BspFNI CGCG 1 cut(s) 284
BspLI GGNNCC 1 cut(s) 534
BspPI GGATC 1 cut(s) 581
BspQI GCTCTTC 2 cut(s) 90, 348
BspTI CTTAAG 1 cut(s) 371
BspTNI GGTCTC 1 cut(s) 191
BsrDI GCAATG 1 cut(s) 30
BssECI CCNNGG 3 cut(s) 18, 483, 590
BssMI GATC 1 cut(s) 573
BssSI CACGAG 1 cut(s) 568
BssT1I CCWWGG 3 cut(s) 18, 483, 590
Bst2BI CACGAG 1 cut(s) 568
Bst4CI ACNGT 4 cut(s) 266, 458, 548, 560
Bst6I CTCTTC 5 cut(s) 90, 147, 163, 348, 591
BstAFI CTTAAG 1 cut(s) 371
BstDEI CTNAG 2 cut(s) 363, 528
BstDSI CCRYGG 1 cut(s) 18
BstFNI CGCG 1 cut(s) 284
BstHHI GCGC 1 cut(s) 336
BstKTI GATC 1 cut(s) 576
BstMAI GTCTC 3 cut(s) 152, 191, 283
BstMBI GATC 1 cut(s) 573
BstMWI GCNNNNNNNGC 3 cut(s) 373, 524, 614
BstSFI CTRYAG 1 cut(s) 36
BstUI CGCG 1 cut(s) 284
BstV2I GAAGAC 3 cut(s) 60, 114, 481
BstXI CCANNNNNNTGG 1 cut(s) 25
BsuI GTATCC 1 cut(s) 557
BtgI CCRYGG 1 cut(s) 18
BtgZI GCGATG 2 cut(s) 299, 428
BtrI CACGTC 1 cut(s) 302
CaiI CAGNNNCTG 1 cut(s) 57
CfoI GCGC 1 cut(s) 336
Cfr13I GGNCC 1 cut(s) 328
CviAII CATG 2 cut(s) 19, 377
DdeI CTNAG 2 cut(s) 363, 528
DpnI GATC 1 cut(s) 575
DpnII GATC 1 cut(s) 573
Eam1104I CTCTTC 5 cut(s) 90, 147, 163, 348, 591
EarI CTCTTC 5 cut(s) 90, 147, 163, 348, 591
Eco130I CCWWGG 3 cut(s) 18, 483, 590
Eco31I GGTCTC 1 cut(s) 191
Eco47I GGWCC 1 cut(s) 328
Eco88I CYCGRG 1 cut(s) 396
EcoT14I CCWWGG 3 cut(s) 18, 483, 590
ErhI CCWWGG 3 cut(s) 18, 483, 590
Esp3I CGTCTC 1 cut(s) 152
FaeI CATG 2 cut(s) 22, 380
FaiI YATR 4 cut(s) 20, 65, 378, 492
FatI CATG 2 cut(s) 18, 376
FspBI CTAG 2 cut(s) 402, 408
GlaI GCGC 1 cut(s) 335
GsuI CTGGAG 1 cut(s) 79
HapII CCGG 4 cut(s) 134, 183, 194, 326
HhaI GCGC 1 cut(s) 336
Hin1II CATG 2 cut(s) 22, 380
Hin6I GCGC 1 cut(s) 334
HinP1I GCGC 1 cut(s) 334
HincII GTYRAC 2 cut(s) 262, 430
HindII GTYRAC 2 cut(s) 262, 430
HindIII AAGCTT 1 cut(s) 235
HinfI GANTC 9 cut(s) 7, 31, 41, 54, 249, 354, 361, 384, 394
HpaII CCGG 4 cut(s) 134, 183, 194, 326
HphI GGTGA 2 cut(s) 560, 611
Hpy166II GTNNAC 3 cut(s) 262, 430, 514
Hpy188I TCNGA 4 cut(s) 107, 218, 309, 581
Hpy188III TCNNGA 5 cut(s) 58, 224, 358, 388, 536
Hpy8I GTNNAC 3 cut(s) 262, 430, 514
Hpy99I CGWCG 1 cut(s) 303
HpyAV CCTTC 2 cut(s) 123, 174
HpyCH4III ACNGT 4 cut(s) 266, 458, 548, 560
HpyCH4IV ACGT 1 cut(s) 301
HpyCH4V TGCA 1 cut(s) 466
HpyF10VI GCNNNNNNNGC 3 cut(s) 373, 524, 614
HpyF3I CTNAG 2 cut(s) 363, 528
HpySE526I ACGT 1 cut(s) 301
Hsp92II CATG 2 cut(s) 22, 380
HspAI GCGC 1 cut(s) 334
Kzo9I GATC 1 cut(s) 573
LguI GCTCTTC 2 cut(s) 90, 348
LmnI GCTCC 1 cut(s) 613
LpnPI CCDG 8 cut(s) 43, 147, 196, 207, 237, 339, 344, 549
LweI GCATC 1 cut(s) 107
MaeI CTAG 2 cut(s) 402, 408
MaeII ACGT 1 cut(s) 301
MaeIII GTNAC 1 cut(s) 136
MalI GATC 1 cut(s) 575
MboI GATC 1 cut(s) 573
MboII GAAGA 8 cut(s) 60, 77, 114, 134, 150, 335, 486, 578
MluCI AATT 1 cut(s) 255
MlyI GAGTC 5 cut(s) 25, 63, 348, 355, 388
MnlI CCTC 9 cut(s) 100, 127, 213, 218, 344, 411, 523, 564, 590
MroXI GAANNNNTTC 1 cut(s) 248
MseI TTAA 1 cut(s) 372
MslI CAYNNNNRTG 1 cut(s) 23
MspCI CTTAAG 1 cut(s) 371
MspI CCGG 4 cut(s) 134, 183, 194, 326
MvnI CGCG 1 cut(s) 284
MwoI GCNNNNNNNGC 3 cut(s) 373, 524, 614
NcoI CCATGG 1 cut(s) 18
NdeII GATC 1 cut(s) 573
NlaIII CATG 2 cut(s) 22, 380
NlaIV GGNNCC 1 cut(s) 534
PaeR7I CTCGAG 1 cut(s) 396
PciSI GCTCTTC 2 cut(s) 90, 348
PdmI GAANNNNTTC 1 cut(s) 248
PfeI GAWTC 4 cut(s) 7, 41, 249, 384
PleI GAGTC 5 cut(s) 25, 62, 348, 355, 388
PpsI GAGTC 5 cut(s) 25, 62, 348, 355, 388
PspN4I GGNNCC 1 cut(s) 534
PspPI GGNCC 1 cut(s) 328
PspXI VCTCGAGB 1 cut(s) 396
PstNI CAGNNNCTG 1 cut(s) 57
RseI CAYNNNNRTG 1 cut(s) 23
SapI GCTCTTC 2 cut(s) 90, 348
SaqAI TTAA 1 cut(s) 372
Sau3AI GATC 1 cut(s) 573
Sau96I GGNCC 1 cut(s) 328
SchI GAGTC 5 cut(s) 25, 63, 348, 355, 388
SfaNI GCATC 1 cut(s) 107
SfcI CTRYAG 1 cut(s) 36
Sfr274I CTCGAG 1 cut(s) 396
SinI GGWCC 1 cut(s) 328
SlaI CTCGAG 1 cut(s) 396
SmiMI CAYNNNNRTG 1 cut(s) 23
SmlI CTYRAG 2 cut(s) 371, 396
SmoI CTYRAG 2 cut(s) 371, 396
Sse9I AATT 1 cut(s) 255
SsiI CCGC 1 cut(s) 96
SspMI CTAG 2 cut(s) 402, 408
StyI CCWWGG 3 cut(s) 18, 483, 590
TaaI ACNGT 4 cut(s) 266, 458, 548, 560
TaiI ACGT 1 cut(s) 304
TaqI TCGA 1 cut(s) 397
TasI AATT 1 cut(s) 255
TfiI GAWTC 4 cut(s) 7, 41, 249, 384
Tru1I TTAA 1 cut(s) 372
Tru9I TTAA 1 cut(s) 372
TspGWI ACGGA 2 cut(s) 34, 309
Vha464I CTTAAG 1 cut(s) 371
VpaK11BI GGWCC 1 cut(s) 328
XhoI CTCGAG 1 cut(s) 396
XmnI GAANNNNTTC 1 cut(s) 248
XspI CTAG 2 cut(s) 402, 408
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.