RchiOBHm_Chr3g0459361

Belongs to the bacterial ribosomal protein bL17 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
OG0015209
Physical Location & Seq
Forward (+)
7822328 .. 7823851
1524 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ42595

Sequence Viewer

Length: 663 bp
ATGGCGATGACAATGGCATTGGCAACAGCAACCGGAACAGTGGATGCTGGGAGTAGATGGAGCATGGCGTCGCTGAGGTCAGCACTTCCATCACCGTCTACGGTTGCTGCTTCTTCTTCGTCTTCAACACATTGTGGGCATCGAGGTCTGCGCCTGAGCCTGAGCCTGAGCCTCAGTCCGTCTGTCCCTAAACCCCAGAAGTATTTTGGGTCCTTCACGGGTCTCTCTCCCTTCAACCCTCTCGGCCTCTCAGACAACACGAGTTTTGAACAAAACTTTACCATTATTGATAATGGAGGCCGCGTTTATGCAATGAGACATGGAAGGAAAGTGCCTAAGCTCAACAGGCCTCCCGACCAAAGGAAGGCGCTTCTCCGAGGCCTCACTACTCAGCTCCTTAAGCATGGCCGCATCAAAACCACTCGAGCAAGGGCAAGCGCCATGAGGAAGTATGTTGACAAGATGATCACATTAGCCAAAGAAGGGTCTCTTCATAAGAGGAGGCAGGCTCTTGGATTCATTTATGAGAAGCAAATTGTCCATGCCTTGTTTGCCGAGGTACCAGAGAGATATGGGGAAAGAAATGGTGGTTATACTAGAATTATCAGAACACTTCCGAGGCGAGGGGACAATGCACCCATGGCATATATTGAACTCGTGTAG

Protein Analysis

220

Amino Acids

24.25

Weight (kDa)

10.97

Isoelectric Point (pI)

45.11

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribosomal_L17 PF01196 124 - 220 3.5e-38 Ribosomal protein L17
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0015209)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G54210
fragaria_vesca FvH4_6g09150
malus_domestica MD12G1195700.v1.1
prunus_persica Prupe.6G300200_v2.0.a1
pyrus_communis pycom12g18190
rosa_chinensis RchiOBHm_Chr3g0459361
rosa_laevigata RLG00000025087
rosa_multiflora Rmu_sc0006944.1_g000001
rosa_roxburghii Rroxscaffold_6G00420230
rosa_rugosa Rorug03G0035800.1 Rorug03G0036200
rosa_samantha Rh3AG093800 Rh3BG096700 Rh3CG097900 Rh3DG097400
rosa_wichuraiana Rw3G008070

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 559
AccB1I GGYRCC 1 cut(s) 559
AccI GTMKAC 1 cut(s) 98
AccII CGCG 1 cut(s) 303
AciI CCGC 2 cut(s) 301, 409
AcoI YGGCCR 1 cut(s) 406
AcyI GRCGYC 1 cut(s) 68
AdeI CACNNNGTG 1 cut(s) 134
AfaI GTAC 1 cut(s) 561
AfiI CCNNNNNNNGG 4 cut(s) 360, 364, 483, 623
AflII CTTAAG 1 cut(s) 398
AgsI TTSAA 4 cut(s) 126, 235, 269, 653
AluBI AGCT 2 cut(s) 340, 394
AluI AGCT 2 cut(s) 340, 394
Alw26I GTCTC 3 cut(s) 227, 310, 492
Ama87I CYCGRG 1 cut(s) 423
AoxI GGCC 5 cut(s) 244, 298, 347, 379, 406
ApeKI GCWGC 1 cut(s) 107
Asp718I GGTACC 1 cut(s) 559
AspLEI GCGC 3 cut(s) 153, 370, 440
AspS9I GGNCC 1 cut(s) 210
AsuHPI GGTGA 1 cut(s) 84
AvaI CYCGRG 1 cut(s) 423
AvaII GGWCC 1 cut(s) 210
BanI GGYRCC 1 cut(s) 559
BauI CACGAG 2 cut(s) 259, 656
BbsI GAAGAC 1 cut(s) 114
BbvCI CCTCAGC 1 cut(s) 74
BbvI GCAGC 1 cut(s) 94
BccI CCATC 2 cut(s) 51, 97
BclI TGATCA 1 cut(s) 465
BcoDI GTCTC 3 cut(s) 227, 310, 492
BfaI CTAG 1 cut(s) 597
BfoI RGCGCY 2 cut(s) 371, 441
BfrI CTTAAG 1 cut(s) 398
BisI GCNGC 3 cut(s) 108, 301, 409
BlsI GCNGC 3 cut(s) 109, 302, 410
Bme18I GGWCC 1 cut(s) 210
BmeT110I CYCGRG 1 cut(s) 423
BmgT120I GGNCC 1 cut(s) 210
BmiI GGNNCC 2 cut(s) 211, 561
BmsI GCATC 3 cut(s) 34, 148, 420
BpiI GAAGAC 1 cut(s) 114
BplI GAGNNNNNCTC 2 cut(s) 493, 525
Bpu10I CCTNAGC 5 cut(s) 74, 155, 161, 167, 336
BsaHI GRCGYC 1 cut(s) 68
BsaI GGTCTC 2 cut(s) 227, 492
BsaJI CCNNGG 4 cut(s) 376, 555, 617, 639
BsaWI WCCGGW 1 cut(s) 32
BsaXI ACNNNNNCTCC 2 cut(s) 288, 318
Bsc4I CCNNNNNNNGG 4 cut(s) 360, 364, 483, 623
Bse3DI GCAATG 1 cut(s) 318
BseDI CCNNGG 4 cut(s) 376, 555, 617, 639
BseGI GGATG 1 cut(s) 49
BseLI CCNNNNNNNGG 4 cut(s) 360, 364, 483, 623
BseMI GCAATG 1 cut(s) 318
BseMII CTCAG 7 cut(s) 65, 146, 152, 158, 187, 264, 404
BseRI GAGGAG 1 cut(s) 514
BseXI GCAGC 1 cut(s) 94
BseYI CCCAGC 1 cut(s) 47
Bsh1236I CGCG 1 cut(s) 303
BshFI GGCC 5 cut(s) 246, 300, 349, 381, 408
BshNI GGYRCC 1 cut(s) 559
BsiHKCI CYCGRG 1 cut(s) 423
BsiSI CCGG 1 cut(s) 33
BslFI GGGAC 2 cut(s) 170, 641
BslI CCNNNNNNNGG 4 cut(s) 360, 364, 483, 623
BsmAI GTCTC 3 cut(s) 227, 310, 492
BsmFI GGGAC 2 cut(s) 170, 641
BsnI GGCC 5 cut(s) 246, 300, 349, 381, 408
Bso31I GGTCTC 2 cut(s) 227, 492
BsoBI CYCGRG 1 cut(s) 423
Bsp143I GATC 1 cut(s) 465
Bsp19I CCATGG 1 cut(s) 639
BspACI CCGC 2 cut(s) 301, 409
BspANI GGCC 5 cut(s) 246, 300, 349, 381, 408
BspCNI CTCAG 7 cut(s) 66, 147, 153, 159, 186, 263, 403
BspFNI CGCG 1 cut(s) 303
BspLI GGNNCC 2 cut(s) 211, 561
BspT107I GGYRCC 1 cut(s) 559
BspTI CTTAAG 1 cut(s) 398
BspTNI GGTCTC 2 cut(s) 227, 492
BsrDI GCAATG 1 cut(s) 318
BssECI CCNNGG 4 cut(s) 376, 555, 617, 639
BssMI GATC 1 cut(s) 465
BssNI GRCGYC 1 cut(s) 68
BssSI CACGAG 2 cut(s) 259, 656
BssT1I CCWWGG 1 cut(s) 639
Bst2BI CACGAG 2 cut(s) 259, 656
Bst4CI ACNGT 3 cut(s) 40, 96, 103
Bst6I CTCTTC 1 cut(s) 495
BstACI GRCGYC 1 cut(s) 68
BstAFI CTTAAG 1 cut(s) 398
BstC8I GCNNGC 2 cut(s) 436, 507
BstDEI CTNAG 8 cut(s) 74, 155, 161, 167, 173, 250, 336, 390
BstDSI CCRYGG 1 cut(s) 639
BstF5I GGATG 1 cut(s) 49
BstFNI CGCG 1 cut(s) 303
BstH2I RGCGCY 2 cut(s) 371, 441
BstHHI GCGC 3 cut(s) 153, 370, 440
BstKTI GATC 1 cut(s) 468
BstMAI GTCTC 3 cut(s) 227, 310, 492
BstMBI GATC 1 cut(s) 465
BstMWI GCNNNNNNNGC 4 cut(s) 346, 400, 551, 641
BstUI CGCG 1 cut(s) 303
BstV1I GCAGC 1 cut(s) 94
BstV2I GAAGAC 1 cut(s) 114
BsuRI GGCC 5 cut(s) 246, 300, 349, 381, 408
BtgI CCRYGG 1 cut(s) 639
BtgZI GCGATG 1 cut(s) 20
BtsCI GGATG 1 cut(s) 49
BtsIMutI CAGTG 1 cut(s) 45
Cac8I GCNNGC 2 cut(s) 436, 507
CfoI GCGC 3 cut(s) 153, 370, 440
Cfr13I GGNCC 1 cut(s) 210
CseI GACGC 1 cut(s) 57
Csp6I GTAC 1 cut(s) 560
CviAII CATG 6 cut(s) 64, 320, 404, 442, 542, 640
CviQI GTAC 1 cut(s) 560
DdeI CTNAG 8 cut(s) 74, 155, 161, 167, 173, 250, 336, 390
DpnI GATC 1 cut(s) 467
DpnII GATC 1 cut(s) 465
DraIII CACNNNGTG 1 cut(s) 134
EaeI YGGCCR 1 cut(s) 406
Eam1104I CTCTTC 1 cut(s) 495
EarI CTCTTC 1 cut(s) 495
Eco130I CCWWGG 1 cut(s) 639
Eco147I AGGCCT 2 cut(s) 349, 381
Eco31I GGTCTC 2 cut(s) 227, 492
Eco47I GGWCC 1 cut(s) 210
Eco88I CYCGRG 1 cut(s) 423
EcoO109I RGGNCCY 1 cut(s) 210
EcoT14I CCWWGG 1 cut(s) 639
ErhI CCWWGG 1 cut(s) 639
FaeI CATG 6 cut(s) 67, 323, 407, 445, 545, 643
FalI AAGNNNNNCTT 2 cut(s) 474, 506
FaqI GGGAC 2 cut(s) 170, 641
FatI CATG 6 cut(s) 63, 319, 403, 441, 541, 639
FbaI TGATCA 1 cut(s) 465
FblI GTMKAC 1 cut(s) 98
Fnu4HI GCNGC 3 cut(s) 108, 301, 409
FokI GGATG 1 cut(s) 56
Fsp4HI GCNGC 3 cut(s) 108, 301, 409
FspBI CTAG 1 cut(s) 597
GlaI GCGC 3 cut(s) 152, 369, 439
GluI GCNGC 3 cut(s) 108, 301, 409
GsaI CCCAGC 1 cut(s) 51
HaeII RGCGCY 2 cut(s) 371, 441
HaeIII GGCC 5 cut(s) 246, 300, 349, 381, 408
HapII CCGG 1 cut(s) 33
HgaI GACGC 1 cut(s) 57
HhaI GCGC 3 cut(s) 153, 370, 440
Hin1I GRCGYC 1 cut(s) 68
Hin1II CATG 6 cut(s) 67, 323, 407, 445, 545, 643
Hin6I GCGC 3 cut(s) 151, 368, 438
HinP1I GCGC 3 cut(s) 151, 368, 438
HincII GTYRAC 1 cut(s) 457
HindII GTYRAC 1 cut(s) 457
HinfI GANTC 1 cut(s) 516
HpaII CCGG 1 cut(s) 33
HphI GGTGA 1 cut(s) 84
Hpy166II GTNNAC 2 cut(s) 99, 457
Hpy188I TCNGA 4 cut(s) 253, 377, 608, 618
Hpy188III TCNNGA 1 cut(s) 353
Hpy8I GTNNAC 2 cut(s) 99, 457
Hpy99I CGWCG 1 cut(s) 73
HpyAV CCTTC 5 cut(s) 223, 241, 318, 358, 476
HpyCH4III ACNGT 3 cut(s) 40, 96, 103
HpyCH4V TGCA 2 cut(s) 311, 635
HpyF10VI GCNNNNNNNGC 4 cut(s) 346, 400, 551, 641
HpyF3I CTNAG 8 cut(s) 74, 155, 161, 167, 173, 250, 336, 390
Hsp92I GRCGYC 1 cut(s) 68
Hsp92II CATG 6 cut(s) 67, 323, 407, 445, 545, 643
HspAI GCGC 3 cut(s) 151, 368, 438
KpnI GGTACC 1 cut(s) 563
Ksp22I TGATCA 1 cut(s) 465
Kzo9I GATC 1 cut(s) 465
LmnI GCTCC 2 cut(s) 60, 399
LpnPI CCDG 9 cut(s) 33, 46, 167, 173, 179, 209, 331, 491, 576
Lsp1109I GCAGC 1 cut(s) 94
LweI GCATC 3 cut(s) 34, 148, 420
MaeI CTAG 1 cut(s) 597
MalI GATC 1 cut(s) 467
MboI GATC 1 cut(s) 465
MboII GAAGA 4 cut(s) 105, 108, 114, 482
MluCI AATT 2 cut(s) 534, 600
MseI TTAA 1 cut(s) 399
MspCI CTTAAG 1 cut(s) 398
MspI CCGG 1 cut(s) 33
MvnI CGCG 1 cut(s) 303
MwoI GCNNNNNNNGC 4 cut(s) 346, 400, 551, 641
NcoI CCATGG 1 cut(s) 639
NdeII GATC 1 cut(s) 465
NlaIII CATG 6 cut(s) 67, 323, 407, 445, 545, 643
NlaIV GGNNCC 2 cut(s) 211, 561
NmeAIII GCCGAG 2 cut(s) 222, 580
PaeR7I CTCGAG 1 cut(s) 423
PceI AGGCCT 2 cut(s) 349, 381
PfeI GAWTC 1 cut(s) 516
PkrI GCNGC 3 cut(s) 109, 302, 410
PpuMI RGGWCCY 1 cut(s) 210
Psp5II RGGWCCY 1 cut(s) 210
PspFI CCCAGC 1 cut(s) 47
PspN4I GGNNCC 2 cut(s) 211, 561
PspPI GGNCC 1 cut(s) 210
PspPPI RGGWCCY 1 cut(s) 210
PspXI VCTCGAGB 1 cut(s) 423
RsaI GTAC 1 cut(s) 561
RsaNI GTAC 1 cut(s) 560
SaqAI TTAA 1 cut(s) 399
SatI GCNGC 3 cut(s) 108, 301, 409
Sau3AI GATC 1 cut(s) 465
Sau96I GGNCC 1 cut(s) 210
SetI ASST 5 cut(s) 80, 148, 342, 396, 561
SfaNI GCATC 3 cut(s) 34, 148, 420
Sfr274I CTCGAG 1 cut(s) 423
SinI GGWCC 1 cut(s) 210
SlaI CTCGAG 1 cut(s) 423
SmlI CTYRAG 2 cut(s) 398, 423
SmoI CTYRAG 2 cut(s) 398, 423
Sse9I AATT 2 cut(s) 534, 600
SseBI AGGCCT 2 cut(s) 349, 381
SsiI CCGC 2 cut(s) 301, 409
SspMI CTAG 1 cut(s) 597
StuI AGGCCT 2 cut(s) 349, 381
StyI CCWWGG 1 cut(s) 639
TaaI ACNGT 3 cut(s) 40, 96, 103
TaqI TCGA 2 cut(s) 142, 424
TasI AATT 2 cut(s) 534, 600
TauI GCSGC 2 cut(s) 303, 411
TfiI GAWTC 1 cut(s) 516
Tru1I TTAA 1 cut(s) 399
Tru9I TTAA 1 cut(s) 399
TscAI CASTG 1 cut(s) 45
TseI GCWGC 1 cut(s) 107
TspDTI ATGAA 2 cut(s) 482, 508
TspGWI ACGGA 1 cut(s) 168
TspRI CASTG 1 cut(s) 45
Vha464I CTTAAG 1 cut(s) 398
VpaK11BI GGWCC 1 cut(s) 210
XcmI CCANNNNNNNNNTGG 1 cut(s) 203
XhoI CTCGAG 1 cut(s) 423
XmiI GTMKAC 1 cut(s) 98
XspI CTAG 1 cut(s) 597
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.