Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr3

Orthogroup ID

OG0015209

Physical Location & Seq

Genomic Coordinates Forward (+)

7493710 .. 7495626

Gene Structure 1917 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw3G008070.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 663 bp

ATGGCAATGACAATGGCATTGGCAACAGCAACCGGAACAGTGGATGCTGGGAGTAGATGGAGCATGGCGTCGCTGAGGTCAGCACTTCCATCACCGTCTACGGTTGCTGCTTCTTCTTCGTCTTCAACACATTGTGGGCATCGAGGTCTGCGCCTGCGCCTGAGCCTGAGCCTCAGTCCGTCTGTCCCTAAACCCCAGAAGTATTTTGGGTCCTTCACGGGTCTCTCTCCCTTCAACCCTCTCGGCCTCTCAGACAACACGAGTTTTGAACAAAACTTTACCATTATTGATAATGGTGGCCGGGTTTATGCAATGAGACATGGAAGGAAAGTGCCTAAGCTCAACAGGCCTCCCGACCAAAGGAAGGCGCTTCTCCGAGGCCTCACTACTCAGCTCCTTAAGCATGGCCGCATCAAAACCACTCGAGCAAGGGCAAGCGCCATGAGGAAGTATGTTGACAAGATGATCACATTGGCCAAAGAAGGGTCTCTTCATAAGAGGAGGCAGGCTCTTGGATTCATTTATGAGAAGCAAATTGTCCATGCCTTGTTTGCCGAGGTACCAGAGAGATATGGGGAAAGAAATGGTGGTTATACTAGAATTATCAGAACACTTCCGAGGCGAGGGGACAATGCACCCATGGCATATATTGAACTCGTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003735 GO:0005198 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009941 GO:0015934 GO:0022625 GO:0022626 GO:0031967 GO:0031975 GO:0032991 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044391 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L17

Protein Analysis

220

Amino Acids

24.31

Weight (kDa)

11.08

Isoelectric Point (pI)

45.98

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_L17	PF01196	124 - 220	3.5e-38	Ribosomal protein L17

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015209)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G54210
fragaria_vesca	FvH4_6g09150
malus_domestica	MD12G1195700.v1.1
prunus_persica	Prupe.6G300200_v2.0.a1
pyrus_communis	pycom12g18190
rosa_chinensis	RchiOBHm_Chr3g0459361
rosa_laevigata	RLG00000025087
rosa_multiflora	Rmu_sc0006944.1_g000001
rosa_roxburghii	Rroxscaffold_6G00420230
rosa_rugosa	Rorug03G0035800.1 Rorug03G0036200
rosa_samantha	Rh3AG093800 Rh3BG096700 Rh3CG097900 Rh3DG097400
rosa_wichuraiana	Rw3G008070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	559
AccB1I	GGYRCC	1 cut(s)	559
AccI	GTMKAC	1 cut(s)	98
AciI	CCGC	1 cut(s)	409
AcoI	YGGCCR	3 cut(s)	298, 406, 474
AcyI	GRCGYC	1 cut(s)	68
AdeI	CACNNNGTG	1 cut(s)	134
AfaI	GTAC	1 cut(s)	561
AfiI	CCNNNNNNNGG	4 cut(s)	360, 364, 483, 623
AflII	CTTAAG	1 cut(s)	398
AgsI	TTSAA	4 cut(s)	126, 235, 269, 653
AluBI	AGCT	2 cut(s)	340, 394
AluI	AGCT	2 cut(s)	340, 394
Alw26I	GTCTC	3 cut(s)	227, 310, 492
Ama87I	CYCGRG	1 cut(s)	423
AoxI	GGCC	6 cut(s)	244, 298, 347, 379, 406, 474
ApeKI	GCWGC	1 cut(s)	107
Asp718I	GGTACC	1 cut(s)	559
AspLEI	GCGC	4 cut(s)	153, 159, 370, 440
AspS9I	GGNCC	1 cut(s)	210
AsuC2I	CCSGG	1 cut(s)	302
AsuHPI	GGTGA	1 cut(s)	84
AvaI	CYCGRG	1 cut(s)	423
AvaII	GGWCC	1 cut(s)	210
BalI	TGGCCA	1 cut(s)	476
BanI	GGYRCC	1 cut(s)	559
BauI	CACGAG	2 cut(s)	259, 656
BbsI	GAAGAC	1 cut(s)	114
BbvCI	CCTCAGC	1 cut(s)	74
BbvI	GCAGC	1 cut(s)	94
BccI	CCATC	2 cut(s)	51, 97
BclI	TGATCA	1 cut(s)	465
BcnI	CCSGG	1 cut(s)	302
BcoDI	GTCTC	3 cut(s)	227, 310, 492
BfaI	CTAG	1 cut(s)	597
BfoI	RGCGCY	2 cut(s)	371, 441
BfrI	CTTAAG	1 cut(s)	398
BisI	GCNGC	2 cut(s)	108, 409
BlsI	GCNGC	2 cut(s)	109, 410
Bme1390I	CCNGG	1 cut(s)	302
Bme18I	GGWCC	1 cut(s)	210
BmeT110I	CYCGRG	1 cut(s)	423
BmgT120I	GGNCC	1 cut(s)	210
BmiI	GGNNCC	2 cut(s)	211, 561
BmrFI	CCNGG	1 cut(s)	302
BmsI	GCATC	3 cut(s)	34, 148, 420
BpiI	GAAGAC	1 cut(s)	114
BplI	GAGNNNNNCTC	2 cut(s)	493, 525
Bpu10I	CCTNAGC	4 cut(s)	74, 161, 167, 336
BpuMI	CCSGG	1 cut(s)	302
BsaHI	GRCGYC	1 cut(s)	68
BsaI	GGTCTC	2 cut(s)	227, 492
BsaJI	CCNNGG	4 cut(s)	376, 555, 617, 639
BsaWI	WCCGGW	1 cut(s)	32
Bsc4I	CCNNNNNNNGG	4 cut(s)	360, 364, 483, 623
Bse3DI	GCAATG	2 cut(s)	12, 318
BseDI	CCNNGG	4 cut(s)	376, 555, 617, 639
BseGI	GGATG	1 cut(s)	49
BseLI	CCNNNNNNNGG	4 cut(s)	360, 364, 483, 623
BseMI	GCAATG	2 cut(s)	12, 318
BseMII	CTCAG	6 cut(s)	65, 152, 158, 187, 264, 404
BseRI	GAGGAG	1 cut(s)	514
BseXI	GCAGC	1 cut(s)	94
BseYI	CCCAGC	1 cut(s)	47
BshFI	GGCC	6 cut(s)	246, 300, 349, 381, 408, 476
BshNI	GGYRCC	1 cut(s)	559
BsiHKCI	CYCGRG	1 cut(s)	423
BsiSI	CCGG	2 cut(s)	33, 301
BslFI	GGGAC	2 cut(s)	170, 641
BslI	CCNNNNNNNGG	4 cut(s)	360, 364, 483, 623
BsmAI	GTCTC	3 cut(s)	227, 310, 492
BsmFI	GGGAC	2 cut(s)	170, 641
BsnI	GGCC	6 cut(s)	246, 300, 349, 381, 408, 476
Bso31I	GGTCTC	2 cut(s)	227, 492
BsoBI	CYCGRG	1 cut(s)	423
Bsp143I	GATC	1 cut(s)	465
Bsp19I	CCATGG	1 cut(s)	639
BspACI	CCGC	1 cut(s)	409
BspANI	GGCC	6 cut(s)	246, 300, 349, 381, 408, 476
BspCNI	CTCAG	6 cut(s)	66, 153, 159, 186, 263, 403
BspLI	GGNNCC	2 cut(s)	211, 561
BspT107I	GGYRCC	1 cut(s)	559
BspTI	CTTAAG	1 cut(s)	398
BspTNI	GGTCTC	2 cut(s)	227, 492
BsrDI	GCAATG	2 cut(s)	12, 318
BssECI	CCNNGG	4 cut(s)	376, 555, 617, 639
BssMI	GATC	1 cut(s)	465
BssNI	GRCGYC	1 cut(s)	68
BssSI	CACGAG	2 cut(s)	259, 656
BssT1I	CCWWGG	1 cut(s)	639
Bst2BI	CACGAG	2 cut(s)	259, 656
Bst4CI	ACNGT	3 cut(s)	40, 96, 103
Bst6I	CTCTTC	1 cut(s)	495
BstACI	GRCGYC	1 cut(s)	68
BstAFI	CTTAAG	1 cut(s)	398
BstC8I	GCNNGC	3 cut(s)	155, 436, 507
BstDEI	CTNAG	7 cut(s)	74, 161, 167, 173, 250, 336, 390
BstDSI	CCRYGG	1 cut(s)	639
BstF5I	GGATG	1 cut(s)	49
BstH2I	RGCGCY	2 cut(s)	371, 441
BstHHI	GCGC	4 cut(s)	153, 159, 370, 440
BstKTI	GATC	1 cut(s)	468
BstMAI	GTCTC	3 cut(s)	227, 310, 492
BstMBI	GATC	1 cut(s)	465
BstMWI	GCNNNNNNNGC	4 cut(s)	346, 400, 551, 641
BstSCI	CCNGG	1 cut(s)	300
BstV1I	GCAGC	1 cut(s)	94
BstV2I	GAAGAC	1 cut(s)	114
BsuRI	GGCC	6 cut(s)	246, 300, 349, 381, 408, 476
BtgI	CCRYGG	1 cut(s)	639
BtsCI	GGATG	1 cut(s)	49
BtsIMutI	CAGTG	1 cut(s)	45
Cac8I	GCNNGC	3 cut(s)	155, 436, 507
CfoI	GCGC	4 cut(s)	153, 159, 370, 440
Cfr13I	GGNCC	1 cut(s)	210
CseI	GACGC	1 cut(s)	57
Csp6I	GTAC	1 cut(s)	560
CviAII	CATG	6 cut(s)	64, 320, 404, 442, 542, 640
CviQI	GTAC	1 cut(s)	560
DdeI	CTNAG	7 cut(s)	74, 161, 167, 173, 250, 336, 390
DpnI	GATC	1 cut(s)	467
DpnII	GATC	1 cut(s)	465
DraIII	CACNNNGTG	1 cut(s)	134
EaeI	YGGCCR	3 cut(s)	298, 406, 474
Eam1104I	CTCTTC	1 cut(s)	495
EarI	CTCTTC	1 cut(s)	495
Eco130I	CCWWGG	1 cut(s)	639
Eco147I	AGGCCT	2 cut(s)	349, 381
Eco31I	GGTCTC	2 cut(s)	227, 492
Eco47I	GGWCC	1 cut(s)	210
Eco88I	CYCGRG	1 cut(s)	423
EcoO109I	RGGNCCY	1 cut(s)	210
EcoT14I	CCWWGG	1 cut(s)	639
ErhI	CCWWGG	1 cut(s)	639
FaeI	CATG	6 cut(s)	67, 323, 407, 445, 545, 643
FalI	AAGNNNNNCTT	2 cut(s)	474, 506
FaqI	GGGAC	2 cut(s)	170, 641
FatI	CATG	6 cut(s)	63, 319, 403, 441, 541, 639
FbaI	TGATCA	1 cut(s)	465
FblI	GTMKAC	1 cut(s)	98
Fnu4HI	GCNGC	2 cut(s)	108, 409
FokI	GGATG	1 cut(s)	56
Fsp4HI	GCNGC	2 cut(s)	108, 409
FspBI	CTAG	1 cut(s)	597
GlaI	GCGC	4 cut(s)	152, 158, 369, 439
GluI	GCNGC	2 cut(s)	108, 409
GsaI	CCCAGC	1 cut(s)	51
HaeII	RGCGCY	2 cut(s)	371, 441
HaeIII	GGCC	6 cut(s)	246, 300, 349, 381, 408, 476
HapII	CCGG	2 cut(s)	33, 301
HgaI	GACGC	1 cut(s)	57
HhaI	GCGC	4 cut(s)	153, 159, 370, 440
Hin1I	GRCGYC	1 cut(s)	68
Hin1II	CATG	6 cut(s)	67, 323, 407, 445, 545, 643
Hin6I	GCGC	4 cut(s)	151, 157, 368, 438
HinP1I	GCGC	4 cut(s)	151, 157, 368, 438
HincII	GTYRAC	1 cut(s)	457
HindII	GTYRAC	1 cut(s)	457
HinfI	GANTC	1 cut(s)	516
HpaII	CCGG	2 cut(s)	33, 301
HphI	GGTGA	1 cut(s)	84
Hpy166II	GTNNAC	2 cut(s)	99, 457
Hpy188I	TCNGA	4 cut(s)	253, 377, 608, 618
Hpy188III	TCNNGA	1 cut(s)	353
Hpy8I	GTNNAC	2 cut(s)	99, 457
Hpy99I	CGWCG	1 cut(s)	73
HpyAV	CCTTC	5 cut(s)	223, 241, 318, 358, 476
HpyCH4III	ACNGT	3 cut(s)	40, 96, 103
HpyCH4V	TGCA	2 cut(s)	311, 635
HpyF10VI	GCNNNNNNNGC	4 cut(s)	346, 400, 551, 641
HpyF3I	CTNAG	7 cut(s)	74, 161, 167, 173, 250, 336, 390
Hsp92I	GRCGYC	1 cut(s)	68
Hsp92II	CATG	6 cut(s)	67, 323, 407, 445, 545, 643
HspAI	GCGC	4 cut(s)	151, 157, 368, 438
KpnI	GGTACC	1 cut(s)	563
Ksp22I	TGATCA	1 cut(s)	465
Kzo9I	GATC	1 cut(s)	465
LmnI	GCTCC	2 cut(s)	60, 399
Lsp1109I	GCAGC	1 cut(s)	94
LweI	GCATC	3 cut(s)	34, 148, 420
MaeI	CTAG	1 cut(s)	597
MalI	GATC	1 cut(s)	467
MboI	GATC	1 cut(s)	465
MboII	GAAGA	4 cut(s)	105, 108, 114, 482
MlsI	TGGCCA	1 cut(s)	476
MluCI	AATT	2 cut(s)	534, 600
MluNI	TGGCCA	1 cut(s)	476
Mox20I	TGGCCA	1 cut(s)	476
MscI	TGGCCA	1 cut(s)	476
MseI	TTAA	1 cut(s)	399
Msp20I	TGGCCA	1 cut(s)	476
MspCI	CTTAAG	1 cut(s)	398
MspI	CCGG	2 cut(s)	33, 301
MspR9I	CCNGG	1 cut(s)	302
MwoI	GCNNNNNNNGC	4 cut(s)	346, 400, 551, 641
NciI	CCSGG	1 cut(s)	302
NcoI	CCATGG	1 cut(s)	639
NdeII	GATC	1 cut(s)	465
NlaIII	CATG	6 cut(s)	67, 323, 407, 445, 545, 643
NlaIV	GGNNCC	2 cut(s)	211, 561
NmeAIII	GCCGAG	2 cut(s)	222, 580
PaeR7I	CTCGAG	1 cut(s)	423
PceI	AGGCCT	2 cut(s)	349, 381
PfeI	GAWTC	1 cut(s)	516
PkrI	GCNGC	2 cut(s)	109, 410
PpuMI	RGGWCCY	1 cut(s)	210
Psp5II	RGGWCCY	1 cut(s)	210
PspFI	CCCAGC	1 cut(s)	47
PspN4I	GGNNCC	2 cut(s)	211, 561
PspPI	GGNCC	1 cut(s)	210
PspPPI	RGGWCCY	1 cut(s)	210
PspXI	VCTCGAGB	1 cut(s)	423
RsaI	GTAC	1 cut(s)	561
RsaNI	GTAC	1 cut(s)	560
SaqAI	TTAA	1 cut(s)	399
SatI	GCNGC	2 cut(s)	108, 409
Sau3AI	GATC	1 cut(s)	465
Sau96I	GGNCC	1 cut(s)	210
ScrFI	CCNGG	1 cut(s)	302
SetI	ASST	5 cut(s)	80, 148, 342, 396, 561
SfaNI	GCATC	3 cut(s)	34, 148, 420
Sfr274I	CTCGAG	1 cut(s)	423
SinI	GGWCC	1 cut(s)	210
SlaI	CTCGAG	1 cut(s)	423
SmlI	CTYRAG	2 cut(s)	398, 423
SmoI	CTYRAG	2 cut(s)	398, 423
Sse9I	AATT	2 cut(s)	534, 600
SseBI	AGGCCT	2 cut(s)	349, 381
SsiI	CCGC	1 cut(s)	409
SspMI	CTAG	1 cut(s)	597
StuI	AGGCCT	2 cut(s)	349, 381
StyD4I	CCNGG	1 cut(s)	300
StyI	CCWWGG	1 cut(s)	639
TaaI	ACNGT	3 cut(s)	40, 96, 103
TaqI	TCGA	2 cut(s)	142, 424
TasI	AATT	2 cut(s)	534, 600
TauI	GCSGC	1 cut(s)	411
TfiI	GAWTC	1 cut(s)	516
Tru1I	TTAA	1 cut(s)	399
Tru9I	TTAA	1 cut(s)	399
TscAI	CASTG	1 cut(s)	45
TseI	GCWGC	1 cut(s)	107
TspDTI	ATGAA	2 cut(s)	482, 508
TspGWI	ACGGA	1 cut(s)	168
TspRI	CASTG	1 cut(s)	45
Vha464I	CTTAAG	1 cut(s)	398
VpaK11BI	GGWCC	1 cut(s)	210
XcmI	CCANNNNNNNNNTGG	1 cut(s)	203
XhoI	CTCGAG	1 cut(s)	423
XmiI	GTMKAC	1 cut(s)	98
XspI	CTAG	1 cut(s)	597

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.