Rh3DG097400

Belongs to the bacterial ribosomal protein bL17 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3D
OG0015209
Physical Location & Seq
Forward (+)
7702567 .. 7703731
1165 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3DG097400.1

Sequence Viewer

Length: 651 bp
ATGGCGATGACAATGGCATTGGCAACAGCAACCGGAACAGTGGATGCTGGGAGTAGATGGAGCATGGCGTCGCTGAGGTCAGCACTTCCATCACCGTCTACCGTTGCTGCTTCTTCTTCGTCTTCAACACATTGTGGGCATCGAGGTCTGCGCCTGAGCCTCAGTCAGTCTGTCCCTAAACCCCAGAAGTATTTTGGGTCCTTCACGGGTCTCTCTCCCTTCAACCCTCTCGGCCTCTCAGACAACACGAGTTTTGAACAAAAATTTACCATTATTGATAATGGTGGCCGGGTTTATGCAATGAGACATGGAAGGAAAGTGCCTAAGCTCAACAGACCTCCCGACCAAAGGAAGGCGCTTCTCCGAGGCCTCACTACTCAGCTCCTTAAGCATGGCCGCATCAAAACCACTCGAGCAAGGGCAAGCGCCATGAGGAAGTATGTTGACAAGATGATCACATTGGCCAAAGAAGGGTCTCTTCATAAGAGGAGGCAGGCTCTTGGATTCATTTATGAGAAGCAAATTGTCCATGCCTTGTTTGCCGAGGTACCAGAGAGATATGGGGAAAGAAATGGTGGTTATACTAGAATTATCAGAACACTTCCGAGGCGAGGGGACAATGCACCCATGGCATATATTGAACTCGTGTAG

Protein Analysis

216

Amino Acids

23.89

Weight (kDa)

10.98

Isoelectric Point (pI)

46.45

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribosomal_L17 PF01196 120 - 216 3.4e-38 Ribosomal protein L17
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015209)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G54210
fragaria_vesca FvH4_6g09150
malus_domestica MD12G1195700.v1.1
prunus_persica Prupe.6G300200_v2.0.a1
pyrus_communis pycom12g18190
rosa_chinensis RchiOBHm_Chr3g0459361
rosa_laevigata RLG00000025087
rosa_multiflora Rmu_sc0006944.1_g000001
rosa_roxburghii Rroxscaffold_6G00420230
rosa_rugosa Rorug03G0035800.1 Rorug03G0036200
rosa_samantha Rh3AG093800 Rh3BG096700 Rh3CG097900 Rh3DG097400
rosa_wichuraiana Rw3G008070

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 547
AccB1I GGYRCC 1 cut(s) 547
AccI GTMKAC 1 cut(s) 98
AciI CCGC 1 cut(s) 397
AcoI YGGCCR 3 cut(s) 286, 394, 462
AcsI RAATTY 1 cut(s) 263
AcyI GRCGYC 1 cut(s) 68
AdeI CACNNNGTG 1 cut(s) 134
AfaI GTAC 1 cut(s) 549
AfiI CCNNNNNNNGG 4 cut(s) 348, 352, 471, 611
AflII CTTAAG 1 cut(s) 386
AgsI TTSAA 4 cut(s) 126, 223, 257, 641
AluBI AGCT 2 cut(s) 328, 382
AluI AGCT 2 cut(s) 328, 382
Alw26I GTCTC 3 cut(s) 215, 298, 480
Ama87I CYCGRG 1 cut(s) 411
AoxI GGCC 5 cut(s) 232, 286, 367, 394, 462
ApeKI GCWGC 1 cut(s) 107
ApoI RAATTY 1 cut(s) 263
Asp718I GGTACC 1 cut(s) 547
AspLEI GCGC 3 cut(s) 153, 358, 428
AspS9I GGNCC 1 cut(s) 198
AsuC2I CCSGG 1 cut(s) 290
AsuHPI GGTGA 1 cut(s) 84
AvaI CYCGRG 1 cut(s) 411
AvaII GGWCC 1 cut(s) 198
BalI TGGCCA 1 cut(s) 464
BanI GGYRCC 1 cut(s) 547
BauI CACGAG 2 cut(s) 247, 644
BbsI GAAGAC 1 cut(s) 114
BbvCI CCTCAGC 1 cut(s) 74
BbvI GCAGC 1 cut(s) 94
BccI CCATC 2 cut(s) 51, 97
BclI TGATCA 1 cut(s) 453
BcnI CCSGG 1 cut(s) 290
BcoDI GTCTC 3 cut(s) 215, 298, 480
BfaI CTAG 1 cut(s) 585
BfoI RGCGCY 2 cut(s) 359, 429
BfrI CTTAAG 1 cut(s) 386
BisI GCNGC 2 cut(s) 108, 397
BlsI GCNGC 2 cut(s) 109, 398
Bme1390I CCNGG 1 cut(s) 290
Bme18I GGWCC 1 cut(s) 198
BmeT110I CYCGRG 1 cut(s) 411
BmgT120I GGNCC 1 cut(s) 198
BmiI GGNNCC 2 cut(s) 199, 549
BmrFI CCNGG 1 cut(s) 290
BmsI GCATC 3 cut(s) 34, 148, 408
BpiI GAAGAC 1 cut(s) 114
BplI GAGNNNNNCTC 2 cut(s) 481, 513
Bpu10I CCTNAGC 3 cut(s) 74, 155, 324
BpuMI CCSGG 1 cut(s) 290
BsaHI GRCGYC 1 cut(s) 68
BsaI GGTCTC 2 cut(s) 215, 480
BsaJI CCNNGG 4 cut(s) 364, 543, 605, 627
BsaWI WCCGGW 1 cut(s) 32
Bsc4I CCNNNNNNNGG 4 cut(s) 348, 352, 471, 611
Bse3DI GCAATG 1 cut(s) 306
BseDI CCNNGG 4 cut(s) 364, 543, 605, 627
BseGI GGATG 1 cut(s) 49
BseLI CCNNNNNNNGG 4 cut(s) 348, 352, 471, 611
BseMI GCAATG 1 cut(s) 306
BseMII CTCAG 5 cut(s) 65, 146, 175, 252, 392
BseRI GAGGAG 1 cut(s) 502
BseXI GCAGC 1 cut(s) 94
BseYI CCCAGC 1 cut(s) 47
BshFI GGCC 5 cut(s) 234, 288, 369, 396, 464
BshNI GGYRCC 1 cut(s) 547
BsiHKCI CYCGRG 1 cut(s) 411
BsiSI CCGG 2 cut(s) 33, 289
BslFI GGGAC 2 cut(s) 158, 629
BslI CCNNNNNNNGG 4 cut(s) 348, 352, 471, 611
BsmAI GTCTC 3 cut(s) 215, 298, 480
BsmFI GGGAC 2 cut(s) 158, 629
BsnI GGCC 5 cut(s) 234, 288, 369, 396, 464
Bso31I GGTCTC 2 cut(s) 215, 480
BsoBI CYCGRG 1 cut(s) 411
Bsp143I GATC 1 cut(s) 453
Bsp19I CCATGG 1 cut(s) 627
BspACI CCGC 1 cut(s) 397
BspANI GGCC 5 cut(s) 234, 288, 369, 396, 464
BspCNI CTCAG 5 cut(s) 66, 147, 174, 251, 391
BspLI GGNNCC 2 cut(s) 199, 549
BspT107I GGYRCC 1 cut(s) 547
BspTI CTTAAG 1 cut(s) 386
BspTNI GGTCTC 2 cut(s) 215, 480
BsrDI GCAATG 1 cut(s) 306
BssECI CCNNGG 4 cut(s) 364, 543, 605, 627
BssMI GATC 1 cut(s) 453
BssNI GRCGYC 1 cut(s) 68
BssSI CACGAG 2 cut(s) 247, 644
BssT1I CCWWGG 1 cut(s) 627
Bst2BI CACGAG 2 cut(s) 247, 644
Bst4CI ACNGT 3 cut(s) 40, 96, 103
Bst6I CTCTTC 1 cut(s) 483
BstACI GRCGYC 1 cut(s) 68
BstAFI CTTAAG 1 cut(s) 386
BstC8I GCNNGC 2 cut(s) 424, 495
BstDEI CTNAG 6 cut(s) 74, 155, 161, 238, 324, 378
BstDSI CCRYGG 1 cut(s) 627
BstF5I GGATG 1 cut(s) 49
BstH2I RGCGCY 2 cut(s) 359, 429
BstHHI GCGC 3 cut(s) 153, 358, 428
BstKTI GATC 1 cut(s) 456
BstMAI GTCTC 3 cut(s) 215, 298, 480
BstMBI GATC 1 cut(s) 453
BstMWI GCNNNNNNNGC 3 cut(s) 388, 539, 629
BstSCI CCNGG 1 cut(s) 288
BstV1I GCAGC 1 cut(s) 94
BstV2I GAAGAC 1 cut(s) 114
BsuRI GGCC 5 cut(s) 234, 288, 369, 396, 464
BtgI CCRYGG 1 cut(s) 627
BtgZI GCGATG 1 cut(s) 20
BtsCI GGATG 1 cut(s) 49
BtsIMutI CAGTG 1 cut(s) 45
Cac8I GCNNGC 2 cut(s) 424, 495
CfoI GCGC 3 cut(s) 153, 358, 428
Cfr13I GGNCC 1 cut(s) 198
CseI GACGC 1 cut(s) 57
Csp6I GTAC 1 cut(s) 548
CviAII CATG 6 cut(s) 64, 308, 392, 430, 530, 628
CviJI RGCY 9 cut(s) 159, 234, 288, 328, 369, 382, 396, 464, 497
CviKI_1 RGCY 9 cut(s) 159, 234, 288, 328, 369, 382, 396, 464, 497
CviQI GTAC 1 cut(s) 548
DdeI CTNAG 6 cut(s) 74, 155, 161, 238, 324, 378
DpnI GATC 1 cut(s) 455
DpnII GATC 1 cut(s) 453
DraIII CACNNNGTG 1 cut(s) 134
EaeI YGGCCR 3 cut(s) 286, 394, 462
Eam1104I CTCTTC 1 cut(s) 483
EarI CTCTTC 1 cut(s) 483
Eco130I CCWWGG 1 cut(s) 627
Eco147I AGGCCT 1 cut(s) 369
Eco31I GGTCTC 2 cut(s) 215, 480
Eco47I GGWCC 1 cut(s) 198
Eco88I CYCGRG 1 cut(s) 411
EcoO109I RGGNCCY 1 cut(s) 198
EcoT14I CCWWGG 1 cut(s) 627
ErhI CCWWGG 1 cut(s) 627
FaeI CATG 6 cut(s) 67, 311, 395, 433, 533, 631
FalI AAGNNNNNCTT 2 cut(s) 462, 494
FaqI GGGAC 2 cut(s) 158, 629
FatI CATG 6 cut(s) 63, 307, 391, 429, 529, 627
FbaI TGATCA 1 cut(s) 453
FblI GTMKAC 1 cut(s) 98
Fnu4HI GCNGC 2 cut(s) 108, 397
FokI GGATG 1 cut(s) 56
Fsp4HI GCNGC 2 cut(s) 108, 397
FspBI CTAG 1 cut(s) 585
GlaI GCGC 3 cut(s) 152, 357, 427
GluI GCNGC 2 cut(s) 108, 397
GsaI CCCAGC 1 cut(s) 51
HaeII RGCGCY 2 cut(s) 359, 429
HaeIII GGCC 5 cut(s) 234, 288, 369, 396, 464
HapII CCGG 2 cut(s) 33, 289
HgaI GACGC 1 cut(s) 57
HhaI GCGC 3 cut(s) 153, 358, 428
Hin1I GRCGYC 1 cut(s) 68
Hin1II CATG 6 cut(s) 67, 311, 395, 433, 533, 631
Hin6I GCGC 3 cut(s) 151, 356, 426
HinP1I GCGC 3 cut(s) 151, 356, 426
HincII GTYRAC 1 cut(s) 445
HindII GTYRAC 1 cut(s) 445
HinfI GANTC 1 cut(s) 504
HpaII CCGG 2 cut(s) 33, 289
HphI GGTGA 1 cut(s) 84
Hpy166II GTNNAC 2 cut(s) 99, 445
Hpy188I TCNGA 4 cut(s) 241, 365, 596, 606
Hpy188III TCNNGA 1 cut(s) 341
Hpy8I GTNNAC 2 cut(s) 99, 445
Hpy99I CGWCG 1 cut(s) 73
HpyAV CCTTC 5 cut(s) 211, 229, 306, 346, 464
HpyCH4III ACNGT 3 cut(s) 40, 96, 103
HpyCH4V TGCA 2 cut(s) 299, 623
HpyF10VI GCNNNNNNNGC 3 cut(s) 388, 539, 629
HpyF3I CTNAG 6 cut(s) 74, 155, 161, 238, 324, 378
Hsp92I GRCGYC 1 cut(s) 68
Hsp92II CATG 6 cut(s) 67, 311, 395, 433, 533, 631
HspAI GCGC 3 cut(s) 151, 356, 426
KpnI GGTACC 1 cut(s) 551
Ksp22I TGATCA 1 cut(s) 453
Kzo9I GATC 1 cut(s) 453
LmnI GCTCC 2 cut(s) 60, 387
LpnPI CCDG 7 cut(s) 33, 46, 167, 197, 302, 479, 564
Lsp1109I GCAGC 1 cut(s) 94
LweI GCATC 3 cut(s) 34, 148, 408
MaeI CTAG 1 cut(s) 585
MalI GATC 1 cut(s) 455
MboI GATC 1 cut(s) 453
MboII GAAGA 4 cut(s) 105, 108, 114, 470
MlsI TGGCCA 1 cut(s) 464
MluCI AATT 3 cut(s) 263, 522, 588
MluNI TGGCCA 1 cut(s) 464
Mox20I TGGCCA 1 cut(s) 464
MscI TGGCCA 1 cut(s) 464
MseI TTAA 1 cut(s) 387
Msp20I TGGCCA 1 cut(s) 464
MspCI CTTAAG 1 cut(s) 386
MspI CCGG 2 cut(s) 33, 289
MspR9I CCNGG 1 cut(s) 290
MwoI GCNNNNNNNGC 3 cut(s) 388, 539, 629
NciI CCSGG 1 cut(s) 290
NcoI CCATGG 1 cut(s) 627
NdeII GATC 1 cut(s) 453
NlaIII CATG 6 cut(s) 67, 311, 395, 433, 533, 631
NlaIV GGNNCC 2 cut(s) 199, 549
NmeAIII GCCGAG 2 cut(s) 210, 568
PaeR7I CTCGAG 1 cut(s) 411
PceI AGGCCT 1 cut(s) 369
PfeI GAWTC 1 cut(s) 504
PkrI GCNGC 2 cut(s) 109, 398
PpuMI RGGWCCY 1 cut(s) 198
Psp5II RGGWCCY 1 cut(s) 198
PspFI CCCAGC 1 cut(s) 47
PspN4I GGNNCC 2 cut(s) 199, 549
PspPI GGNCC 1 cut(s) 198
PspPPI RGGWCCY 1 cut(s) 198
PspXI VCTCGAGB 1 cut(s) 411
RsaI GTAC 1 cut(s) 549
RsaNI GTAC 1 cut(s) 548
SaqAI TTAA 1 cut(s) 387
SatI GCNGC 2 cut(s) 108, 397
Sau3AI GATC 1 cut(s) 453
Sau96I GGNCC 1 cut(s) 198
ScrFI CCNGG 1 cut(s) 290
SetI ASST 6 cut(s) 80, 148, 330, 340, 384, 549
SfaNI GCATC 3 cut(s) 34, 148, 408
Sfr274I CTCGAG 1 cut(s) 411
SinI GGWCC 1 cut(s) 198
SlaI CTCGAG 1 cut(s) 411
SmlI CTYRAG 2 cut(s) 386, 411
SmoI CTYRAG 2 cut(s) 386, 411
Sse9I AATT 3 cut(s) 263, 522, 588
SseBI AGGCCT 1 cut(s) 369
SsiI CCGC 1 cut(s) 397
SspMI CTAG 1 cut(s) 585
StuI AGGCCT 1 cut(s) 369
StyD4I CCNGG 1 cut(s) 288
StyI CCWWGG 1 cut(s) 627
TaaI ACNGT 3 cut(s) 40, 96, 103
TaqI TCGA 2 cut(s) 142, 412
TasI AATT 3 cut(s) 263, 522, 588
TauI GCSGC 1 cut(s) 399
TfiI GAWTC 1 cut(s) 504
Tru1I TTAA 1 cut(s) 387
Tru9I TTAA 1 cut(s) 387
TscAI CASTG 1 cut(s) 45
TseI GCWGC 1 cut(s) 107
TspDTI ATGAA 2 cut(s) 470, 496
TspRI CASTG 1 cut(s) 45
Vha464I CTTAAG 1 cut(s) 386
VpaK11BI GGWCC 1 cut(s) 198
XapI RAATTY 1 cut(s) 263
XcmI CCANNNNNNNNNTGG 1 cut(s) 191
XhoI CTCGAG 1 cut(s) 411
XmiI GTMKAC 1 cut(s) 98
XspI CTAG 1 cut(s) 585
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.