Rh3BG096700

Belongs to the bacterial ribosomal protein bL17 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3B
OG0015209
Physical Location & Seq
Forward (+)
7746238 .. 7749423
3186 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3BG096700.1

Sequence Viewer

Length: 657 bp
ATGGCGATGACAATGGCATTGGCAACAGCAACCGGAACAGTGGATGCTGGGAGTAGATGGAGCATGGCGTCGCTGAGGTCAGCACTTCCATCACCGTCTACGGTTGCTGCTTCTTCTTCGTCTTCAACACATTGTGGGCATCGAGGTCTGCGCCTGAGCCTGAGCCTCAGTCCGTCTGTCCCTAAACCCCAGAAGTATTTTGGGTCCTTCACGGGTCTCTCTCCCTTCAACCCTCTCGGCCTCTCAGACAACACGAGTTTTGAACAAAACTTTACCATTATTGATAATGGTGGCCGGGTTTATGCAATGAGACATGGAAGGAAAGTGCCTAAGCTCAACAGGCCTCCCGACCAAAGGAAGGCGCTTCTCCGAGGCCTCACTACTCAGCTCCTTAAGCATGGCCGCATCAAAACCACTCGAGCAAGGGCAAGCGCCATGAGGAAGTATGTTGACAAGATGATCACATTGGCCAAAGAAGGGTCTCTTCATAAGAGGAGGCAGGCTCTTGGATTCATTTATGAGAAGCAAATTGTCCATGCCTTGTTTGCCGAGGTACCAGAGAGATATGGGGAAAGAAATGGTGGTTATACTAGAATTATCAGAACACTTCCGAGGCGAGGGGACAATGCACCCATGGCATATATTGAACTCGTGTAG

Protein Analysis

218

Amino Acids

24.05

Weight (kDa)

10.97

Isoelectric Point (pI)

45.43

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribosomal_L17 PF01196 122 - 218 3.5e-38 Ribosomal protein L17
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Orthologous Genes (Group: OG0015209)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G54210
fragaria_vesca FvH4_6g09150
malus_domestica MD12G1195700.v1.1
prunus_persica Prupe.6G300200_v2.0.a1
pyrus_communis pycom12g18190
rosa_chinensis RchiOBHm_Chr3g0459361
rosa_laevigata RLG00000025087
rosa_multiflora Rmu_sc0006944.1_g000001
rosa_roxburghii Rroxscaffold_6G00420230
rosa_rugosa Rorug03G0035800.1 Rorug03G0036200
rosa_samantha Rh3AG093800 Rh3BG096700 Rh3CG097900 Rh3DG097400
rosa_wichuraiana Rw3G008070

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 553
AccB1I GGYRCC 1 cut(s) 553
AccI GTMKAC 1 cut(s) 98
AciI CCGC 1 cut(s) 403
AcoI YGGCCR 3 cut(s) 292, 400, 468
AcyI GRCGYC 1 cut(s) 68
AdeI CACNNNGTG 1 cut(s) 134
AfaI GTAC 1 cut(s) 555
AfiI CCNNNNNNNGG 4 cut(s) 354, 358, 477, 617
AflII CTTAAG 1 cut(s) 392
AgsI TTSAA 4 cut(s) 126, 229, 263, 647
AluBI AGCT 2 cut(s) 334, 388
AluI AGCT 2 cut(s) 334, 388
Alw26I GTCTC 3 cut(s) 221, 304, 486
Ama87I CYCGRG 1 cut(s) 417
AoxI GGCC 6 cut(s) 238, 292, 341, 373, 400, 468
ApeKI GCWGC 1 cut(s) 107
Asp718I GGTACC 1 cut(s) 553
AspLEI GCGC 3 cut(s) 153, 364, 434
AspS9I GGNCC 1 cut(s) 204
AsuC2I CCSGG 1 cut(s) 296
AsuHPI GGTGA 1 cut(s) 84
AvaI CYCGRG 1 cut(s) 417
AvaII GGWCC 1 cut(s) 204
BalI TGGCCA 1 cut(s) 470
BanI GGYRCC 1 cut(s) 553
BauI CACGAG 2 cut(s) 253, 650
BbsI GAAGAC 1 cut(s) 114
BbvCI CCTCAGC 1 cut(s) 74
BbvI GCAGC 1 cut(s) 94
BccI CCATC 2 cut(s) 51, 97
BclI TGATCA 1 cut(s) 459
BcnI CCSGG 1 cut(s) 296
BcoDI GTCTC 3 cut(s) 221, 304, 486
BfaI CTAG 1 cut(s) 591
BfoI RGCGCY 2 cut(s) 365, 435
BfrI CTTAAG 1 cut(s) 392
BisI GCNGC 2 cut(s) 108, 403
BlsI GCNGC 2 cut(s) 109, 404
Bme1390I CCNGG 1 cut(s) 296
Bme18I GGWCC 1 cut(s) 204
BmeT110I CYCGRG 1 cut(s) 417
BmgT120I GGNCC 1 cut(s) 204
BmiI GGNNCC 2 cut(s) 205, 555
BmrFI CCNGG 1 cut(s) 296
BmsI GCATC 3 cut(s) 34, 148, 414
BpiI GAAGAC 1 cut(s) 114
BplI GAGNNNNNCTC 2 cut(s) 487, 519
Bpu10I CCTNAGC 4 cut(s) 74, 155, 161, 330
BpuMI CCSGG 1 cut(s) 296
BsaHI GRCGYC 1 cut(s) 68
BsaI GGTCTC 2 cut(s) 221, 486
BsaJI CCNNGG 4 cut(s) 370, 549, 611, 633
BsaWI WCCGGW 1 cut(s) 32
Bsc4I CCNNNNNNNGG 4 cut(s) 354, 358, 477, 617
Bse3DI GCAATG 1 cut(s) 312
BseDI CCNNGG 4 cut(s) 370, 549, 611, 633
BseGI GGATG 1 cut(s) 49
BseLI CCNNNNNNNGG 4 cut(s) 354, 358, 477, 617
BseMI GCAATG 1 cut(s) 312
BseMII CTCAG 6 cut(s) 65, 146, 152, 181, 258, 398
BseRI GAGGAG 1 cut(s) 508
BseXI GCAGC 1 cut(s) 94
BseYI CCCAGC 1 cut(s) 47
BshFI GGCC 6 cut(s) 240, 294, 343, 375, 402, 470
BshNI GGYRCC 1 cut(s) 553
BsiHKCI CYCGRG 1 cut(s) 417
BsiSI CCGG 2 cut(s) 33, 295
BslFI GGGAC 2 cut(s) 164, 635
BslI CCNNNNNNNGG 4 cut(s) 354, 358, 477, 617
BsmAI GTCTC 3 cut(s) 221, 304, 486
BsmFI GGGAC 2 cut(s) 164, 635
BsnI GGCC 6 cut(s) 240, 294, 343, 375, 402, 470
Bso31I GGTCTC 2 cut(s) 221, 486
BsoBI CYCGRG 1 cut(s) 417
Bsp143I GATC 1 cut(s) 459
Bsp19I CCATGG 1 cut(s) 633
BspACI CCGC 1 cut(s) 403
BspANI GGCC 6 cut(s) 240, 294, 343, 375, 402, 470
BspCNI CTCAG 6 cut(s) 66, 147, 153, 180, 257, 397
BspLI GGNNCC 2 cut(s) 205, 555
BspT107I GGYRCC 1 cut(s) 553
BspTI CTTAAG 1 cut(s) 392
BspTNI GGTCTC 2 cut(s) 221, 486
BsrDI GCAATG 1 cut(s) 312
BssECI CCNNGG 4 cut(s) 370, 549, 611, 633
BssMI GATC 1 cut(s) 459
BssNI GRCGYC 1 cut(s) 68
BssSI CACGAG 2 cut(s) 253, 650
BssT1I CCWWGG 1 cut(s) 633
Bst2BI CACGAG 2 cut(s) 253, 650
Bst4CI ACNGT 3 cut(s) 40, 96, 103
Bst6I CTCTTC 1 cut(s) 489
BstACI GRCGYC 1 cut(s) 68
BstAFI CTTAAG 1 cut(s) 392
BstC8I GCNNGC 2 cut(s) 430, 501
BstDEI CTNAG 7 cut(s) 74, 155, 161, 167, 244, 330, 384
BstDSI CCRYGG 1 cut(s) 633
BstF5I GGATG 1 cut(s) 49
BstH2I RGCGCY 2 cut(s) 365, 435
BstHHI GCGC 3 cut(s) 153, 364, 434
BstKTI GATC 1 cut(s) 462
BstMAI GTCTC 3 cut(s) 221, 304, 486
BstMBI GATC 1 cut(s) 459
BstMWI GCNNNNNNNGC 4 cut(s) 340, 394, 545, 635
BstSCI CCNGG 1 cut(s) 294
BstV1I GCAGC 1 cut(s) 94
BstV2I GAAGAC 1 cut(s) 114
BsuRI GGCC 6 cut(s) 240, 294, 343, 375, 402, 470
BtgI CCRYGG 1 cut(s) 633
BtgZI GCGATG 1 cut(s) 20
BtsCI GGATG 1 cut(s) 49
BtsIMutI CAGTG 1 cut(s) 45
Cac8I GCNNGC 2 cut(s) 430, 501
CfoI GCGC 3 cut(s) 153, 364, 434
Cfr13I GGNCC 1 cut(s) 204
CseI GACGC 1 cut(s) 57
Csp6I GTAC 1 cut(s) 554
CviAII CATG 6 cut(s) 64, 314, 398, 436, 536, 634
CviQI GTAC 1 cut(s) 554
DdeI CTNAG 7 cut(s) 74, 155, 161, 167, 244, 330, 384
DpnI GATC 1 cut(s) 461
DpnII GATC 1 cut(s) 459
DraIII CACNNNGTG 1 cut(s) 134
EaeI YGGCCR 3 cut(s) 292, 400, 468
Eam1104I CTCTTC 1 cut(s) 489
EarI CTCTTC 1 cut(s) 489
Eco130I CCWWGG 1 cut(s) 633
Eco147I AGGCCT 2 cut(s) 343, 375
Eco31I GGTCTC 2 cut(s) 221, 486
Eco47I GGWCC 1 cut(s) 204
Eco88I CYCGRG 1 cut(s) 417
EcoO109I RGGNCCY 1 cut(s) 204
EcoT14I CCWWGG 1 cut(s) 633
ErhI CCWWGG 1 cut(s) 633
FaeI CATG 6 cut(s) 67, 317, 401, 439, 539, 637
FalI AAGNNNNNCTT 2 cut(s) 468, 500
FaqI GGGAC 2 cut(s) 164, 635
FatI CATG 6 cut(s) 63, 313, 397, 435, 535, 633
FbaI TGATCA 1 cut(s) 459
FblI GTMKAC 1 cut(s) 98
Fnu4HI GCNGC 2 cut(s) 108, 403
FokI GGATG 1 cut(s) 56
Fsp4HI GCNGC 2 cut(s) 108, 403
FspBI CTAG 1 cut(s) 591
GlaI GCGC 3 cut(s) 152, 363, 433
GluI GCNGC 2 cut(s) 108, 403
GsaI CCCAGC 1 cut(s) 51
HaeII RGCGCY 2 cut(s) 365, 435
HaeIII GGCC 6 cut(s) 240, 294, 343, 375, 402, 470
HapII CCGG 2 cut(s) 33, 295
HgaI GACGC 1 cut(s) 57
HhaI GCGC 3 cut(s) 153, 364, 434
Hin1I GRCGYC 1 cut(s) 68
Hin1II CATG 6 cut(s) 67, 317, 401, 439, 539, 637
Hin6I GCGC 3 cut(s) 151, 362, 432
HinP1I GCGC 3 cut(s) 151, 362, 432
HincII GTYRAC 1 cut(s) 451
HindII GTYRAC 1 cut(s) 451
HinfI GANTC 1 cut(s) 510
HpaII CCGG 2 cut(s) 33, 295
HphI GGTGA 1 cut(s) 84
Hpy166II GTNNAC 2 cut(s) 99, 451
Hpy188I TCNGA 4 cut(s) 247, 371, 602, 612
Hpy188III TCNNGA 1 cut(s) 347
Hpy8I GTNNAC 2 cut(s) 99, 451
Hpy99I CGWCG 1 cut(s) 73
HpyAV CCTTC 5 cut(s) 217, 235, 312, 352, 470
HpyCH4III ACNGT 3 cut(s) 40, 96, 103
HpyCH4V TGCA 2 cut(s) 305, 629
HpyF10VI GCNNNNNNNGC 4 cut(s) 340, 394, 545, 635
HpyF3I CTNAG 7 cut(s) 74, 155, 161, 167, 244, 330, 384
Hsp92I GRCGYC 1 cut(s) 68
Hsp92II CATG 6 cut(s) 67, 317, 401, 439, 539, 637
HspAI GCGC 3 cut(s) 151, 362, 432
KpnI GGTACC 1 cut(s) 557
Ksp22I TGATCA 1 cut(s) 459
Kzo9I GATC 1 cut(s) 459
LmnI GCTCC 2 cut(s) 60, 393
LpnPI CCDG 9 cut(s) 33, 46, 167, 173, 203, 308, 325, 485, 570
Lsp1109I GCAGC 1 cut(s) 94
LweI GCATC 3 cut(s) 34, 148, 414
MaeI CTAG 1 cut(s) 591
MalI GATC 1 cut(s) 461
MboI GATC 1 cut(s) 459
MboII GAAGA 4 cut(s) 105, 108, 114, 476
MlsI TGGCCA 1 cut(s) 470
MluCI AATT 2 cut(s) 528, 594
MluNI TGGCCA 1 cut(s) 470
Mox20I TGGCCA 1 cut(s) 470
MscI TGGCCA 1 cut(s) 470
MseI TTAA 1 cut(s) 393
Msp20I TGGCCA 1 cut(s) 470
MspCI CTTAAG 1 cut(s) 392
MspI CCGG 2 cut(s) 33, 295
MspR9I CCNGG 1 cut(s) 296
MwoI GCNNNNNNNGC 4 cut(s) 340, 394, 545, 635
NciI CCSGG 1 cut(s) 296
NcoI CCATGG 1 cut(s) 633
NdeII GATC 1 cut(s) 459
NlaIII CATG 6 cut(s) 67, 317, 401, 439, 539, 637
NlaIV GGNNCC 2 cut(s) 205, 555
NmeAIII GCCGAG 2 cut(s) 216, 574
PaeR7I CTCGAG 1 cut(s) 417
PceI AGGCCT 2 cut(s) 343, 375
PfeI GAWTC 1 cut(s) 510
PkrI GCNGC 2 cut(s) 109, 404
PpuMI RGGWCCY 1 cut(s) 204
Psp5II RGGWCCY 1 cut(s) 204
PspFI CCCAGC 1 cut(s) 47
PspN4I GGNNCC 2 cut(s) 205, 555
PspPI GGNCC 1 cut(s) 204
PspPPI RGGWCCY 1 cut(s) 204
PspXI VCTCGAGB 1 cut(s) 417
RsaI GTAC 1 cut(s) 555
RsaNI GTAC 1 cut(s) 554
SaqAI TTAA 1 cut(s) 393
SatI GCNGC 2 cut(s) 108, 403
Sau3AI GATC 1 cut(s) 459
Sau96I GGNCC 1 cut(s) 204
ScrFI CCNGG 1 cut(s) 296
SetI ASST 5 cut(s) 80, 148, 336, 390, 555
SfaNI GCATC 3 cut(s) 34, 148, 414
Sfr274I CTCGAG 1 cut(s) 417
SinI GGWCC 1 cut(s) 204
SlaI CTCGAG 1 cut(s) 417
SmlI CTYRAG 2 cut(s) 392, 417
SmoI CTYRAG 2 cut(s) 392, 417
Sse9I AATT 2 cut(s) 528, 594
SseBI AGGCCT 2 cut(s) 343, 375
SsiI CCGC 1 cut(s) 403
SspMI CTAG 1 cut(s) 591
StuI AGGCCT 2 cut(s) 343, 375
StyD4I CCNGG 1 cut(s) 294
StyI CCWWGG 1 cut(s) 633
TaaI ACNGT 3 cut(s) 40, 96, 103
TaqI TCGA 2 cut(s) 142, 418
TasI AATT 2 cut(s) 528, 594
TauI GCSGC 1 cut(s) 405
TfiI GAWTC 1 cut(s) 510
Tru1I TTAA 1 cut(s) 393
Tru9I TTAA 1 cut(s) 393
TscAI CASTG 1 cut(s) 45
TseI GCWGC 1 cut(s) 107
TspDTI ATGAA 2 cut(s) 476, 502
TspGWI ACGGA 1 cut(s) 162
TspRI CASTG 1 cut(s) 45
Vha464I CTTAAG 1 cut(s) 392
VpaK11BI GGWCC 1 cut(s) 204
XcmI CCANNNNNNNNNTGG 1 cut(s) 197
XhoI CTCGAG 1 cut(s) 417
XmiI GTMKAC 1 cut(s) 98
XspI CTAG 1 cut(s) 591
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.