Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0015209

Physical Location & Seq

Genomic Coordinates Forward (+)

5434404 .. 5436121

Gene Structure 1718 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g09150.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 654 bp

ATGGCGACGACAATGGCATTGGCAACCGCAACTGGAACAGTGGACACTGCCAGTAGATGGAGCATGGCCTCGCTGAGGTCAGCGCTTCCATCACCGTCTATGATTGCTGCTTCTTCGTCCTCAACTCATTGTGGGCATCGTGGTCTGCGCCTCAGCCTGAGCCTCACTCAGTCTGCACCAAAACCCCAGAAGTATTTTGGGTCCTTCACTGGTCTCTCTCCCTTCAACCCTCTTGGCCTATCAGACAACACAAGTTTTGAACATAACTTTACCATTATTGATAATGGTGGCCGTGTTTATGCAATGAGACACGGAAGGAAAGTGCCTAAGCTCAACAGGCCTCCTGACCAAAGGAAGGCGCTCCTTCGAGGCCTCACAACTCAGCTCCTTAAGCATGGGCGCATCAAAACCACTCGAGCAAGGGCTAGCGCAATGAGGAAGTATGTGGACAAAATGATCACATTGGCCAAAGAAGGGTCTCTGCATAAGAGGAGGCAGGCTCTTGGTTTCATCTATGAGAAGCAGATTGTCCATGCCTTATTTGCTGAAGTACCAGACAGATATGGAGAAAGAAATGGTGGTTATACTAGAATTATCAGAACACTGCCGAGGCGAGGGGACAATGCACCCATGGCATACATTGAACTCGTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003735 GO:0005198 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009941 GO:0015934 GO:0022625 GO:0022626 GO:0031967 GO:0031975 GO:0032991 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044391 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L17

Protein Analysis

218

Amino Acids

24.03

Weight (kDa)

10.97

Isoelectric Point (pI)

41.27

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_L17	PF01196	121 - 217	6.1e-38	Ribosomal protein L17

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0015209)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G54210
fragaria_vesca	FvH4_6g09150
malus_domestica	MD12G1195700.v1.1
prunus_persica	Prupe.6G300200_v2.0.a1
pyrus_communis	pycom12g18190
rosa_chinensis	RchiOBHm_Chr3g0459361
rosa_laevigata	RLG00000025087
rosa_multiflora	Rmu_sc0006944.1_g000001
rosa_roxburghii	Rroxscaffold_6G00420230
rosa_rugosa	Rorug03G0035800.1 Rorug03G0036200
rosa_samantha	Rh3AG093800 Rh3BG096700 Rh3CG097900 Rh3DG097400
rosa_wichuraiana	Rw3G008070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	57
AciI	CCGC	1 cut(s)	27
AcoI	YGGCCR	2 cut(s)	289, 465
AcuI	CTGAAG	1 cut(s)	567
AfaI	GTAC	1 cut(s)	552
AfeI	AGCGCT	1 cut(s)	84
AfiI	CCNNNNNNNGG	5 cut(s)	57, 75, 355, 474, 614
AflII	CTTAAG	1 cut(s)	389
AgsI	TTSAA	3 cut(s)	226, 260, 644
AluBI	AGCT	2 cut(s)	331, 385
AluI	AGCT	2 cut(s)	331, 385
Alw26I	GTCTC	3 cut(s)	218, 301, 483
Ama87I	CYCGRG	1 cut(s)	414
Aor51HI	AGCGCT	1 cut(s)	84
AoxI	GGCC	6 cut(s)	66, 235, 289, 338, 370, 465
ApeKI	GCWGC	1 cut(s)	107
AspLEI	GCGC	5 cut(s)	85, 150, 361, 402, 431
AspS9I	GGNCC	1 cut(s)	201
AsuHPI	GGTGA	1 cut(s)	84
AsuNHI	GCTAGC	1 cut(s)	425
AvaI	CYCGRG	1 cut(s)	414
AvaII	GGWCC	1 cut(s)	201
BalI	TGGCCA	1 cut(s)	467
BauI	CACGAG	1 cut(s)	647
BbvCI	CCTCAGC	2 cut(s)	74, 152
BbvI	GCAGC	1 cut(s)	94
BccI	CCATC	2 cut(s)	51, 97
BceAI	ACGGC	1 cut(s)	276
BclI	TGATCA	1 cut(s)	456
BcoDI	GTCTC	3 cut(s)	218, 301, 483
BfaI	CTAG	2 cut(s)	426, 588
BfoI	RGCGCY	2 cut(s)	86, 362
BfrI	CTTAAG	1 cut(s)	389
BisI	GCNGC	1 cut(s)	108
BlsI	GCNGC	1 cut(s)	109
Bme18I	GGWCC	1 cut(s)	201
BmeT110I	CYCGRG	1 cut(s)	414
BmgT120I	GGNCC	1 cut(s)	201
BmiI	GGNNCC	1 cut(s)	202
BmsI	GCATC	2 cut(s)	145, 411
BmtI	GCTAGC	1 cut(s)	429
BplI	GAGNNNNNCTC	4 cut(s)	151, 183, 484, 516
Bpu10I	CCTNAGC	4 cut(s)	74, 152, 158, 327
BsaI	GGTCTC	2 cut(s)	218, 483
BsaJI	CCNNGG	2 cut(s)	608, 630
Bsc4I	CCNNNNNNNGG	5 cut(s)	57, 75, 355, 474, 614
Bse1I	ACTGG	3 cut(s)	37, 51, 214
Bse3DI	GCAATG	2 cut(s)	309, 438
BseDI	CCNNGG	2 cut(s)	608, 630
BseLI	CCNNNNNNNGG	5 cut(s)	57, 75, 355, 474, 614
BseMI	GCAATG	2 cut(s)	309, 438
BseMII	CTCAG	5 cut(s)	65, 149, 166, 182, 395
BseNI	ACTGG	3 cut(s)	37, 51, 214
BseRI	GAGGAG	1 cut(s)	505
BseXI	GCAGC	1 cut(s)	94
BsgI	GTGCAG	1 cut(s)	159
BshFI	GGCC	6 cut(s)	68, 237, 291, 340, 372, 467
BsiHKCI	CYCGRG	1 cut(s)	414
BslFI	GGGAC	1 cut(s)	632
BslI	CCNNNNNNNGG	5 cut(s)	57, 75, 355, 474, 614
BsmAI	GTCTC	3 cut(s)	218, 301, 483
BsmFI	GGGAC	1 cut(s)	632
BsnI	GGCC	6 cut(s)	68, 237, 291, 340, 372, 467
Bso31I	GGTCTC	2 cut(s)	218, 483
BsoBI	CYCGRG	1 cut(s)	414
Bsp143I	GATC	1 cut(s)	456
Bsp19I	CCATGG	1 cut(s)	630
BspACI	CCGC	1 cut(s)	27
BspANI	GGCC	6 cut(s)	68, 237, 291, 340, 372, 467
BspCNI	CTCAG	5 cut(s)	66, 150, 165, 181, 394
BspLI	GGNNCC	1 cut(s)	202
BspOI	GCTAGC	1 cut(s)	429
BspTI	CTTAAG	1 cut(s)	389
BspTNI	GGTCTC	2 cut(s)	218, 483
BsrDI	GCAATG	2 cut(s)	309, 438
BsrI	ACTGG	3 cut(s)	37, 51, 214
BssECI	CCNNGG	2 cut(s)	608, 630
BssMI	GATC	1 cut(s)	456
BssSI	CACGAG	1 cut(s)	647
BssT1I	CCWWGG	1 cut(s)	630
Bst2BI	CACGAG	1 cut(s)	647
Bst4CI	ACNGT	2 cut(s)	40, 96
BstAFI	CTTAAG	1 cut(s)	389
BstC8I	GCNNGC	2 cut(s)	427, 498
BstDEI	CTNAG	6 cut(s)	74, 152, 158, 168, 327, 381
BstDSI	CCRYGG	1 cut(s)	630
BstENI	CCTNNNNNAGG	1 cut(s)	73
BstH2I	RGCGCY	2 cut(s)	86, 362
BstHHI	GCGC	5 cut(s)	85, 150, 361, 402, 431
BstKTI	GATC	1 cut(s)	459
BstMAI	GTCTC	3 cut(s)	218, 301, 483
BstMBI	GATC	1 cut(s)	456
BstMWI	GCNNNNNNNGC	4 cut(s)	337, 391, 542, 632
BstV1I	GCAGC	1 cut(s)	94
BsuRI	GGCC	6 cut(s)	68, 237, 291, 340, 372, 467
BtgI	CCRYGG	1 cut(s)	630
BtsI	GCAGTG	2 cut(s)	45, 602
BtsIMutI	CAGTG	4 cut(s)	45, 45, 207, 602
Cac8I	GCNNGC	2 cut(s)	427, 498
CfoI	GCGC	5 cut(s)	85, 150, 361, 402, 431
Cfr13I	GGNCC	1 cut(s)	201
Csp6I	GTAC	1 cut(s)	551
CviAII	CATG	4 cut(s)	64, 395, 533, 631
CviQI	GTAC	1 cut(s)	551
DdeI	CTNAG	6 cut(s)	74, 152, 158, 168, 327, 381
DpnI	GATC	1 cut(s)	458
DpnII	GATC	1 cut(s)	456
EaeI	YGGCCR	2 cut(s)	289, 465
Eco130I	CCWWGG	1 cut(s)	630
Eco147I	AGGCCT	2 cut(s)	340, 372
Eco31I	GGTCTC	2 cut(s)	218, 483
Eco47I	GGWCC	1 cut(s)	201
Eco47III	AGCGCT	1 cut(s)	84
Eco57I	CTGAAG	1 cut(s)	567
Eco88I	CYCGRG	1 cut(s)	414
EcoNI	CCTNNNNNAGG	1 cut(s)	73
EcoO109I	RGGNCCY	1 cut(s)	201
EcoT14I	CCWWGG	1 cut(s)	630
ErhI	CCWWGG	1 cut(s)	630
FaeI	CATG	4 cut(s)	67, 398, 536, 634
FaqI	GGGAC	1 cut(s)	632
FatI	CATG	4 cut(s)	63, 394, 532, 630
FbaI	TGATCA	1 cut(s)	456
Fnu4HI	GCNGC	1 cut(s)	108
Fsp4HI	GCNGC	1 cut(s)	108
FspBI	CTAG	2 cut(s)	426, 588
GlaI	GCGC	5 cut(s)	84, 149, 360, 401, 430
GluI	GCNGC	1 cut(s)	108
HaeII	RGCGCY	2 cut(s)	86, 362
HaeIII	GGCC	6 cut(s)	68, 237, 291, 340, 372, 467
HhaI	GCGC	5 cut(s)	85, 150, 361, 402, 431
Hin1II	CATG	4 cut(s)	67, 398, 536, 634
Hin6I	GCGC	5 cut(s)	83, 148, 359, 400, 429
HinP1I	GCGC	5 cut(s)	83, 148, 359, 400, 429
HphI	GGTGA	1 cut(s)	84
Hpy166II	GTNNAC	2 cut(s)	43, 448
Hpy188I	TCNGA	2 cut(s)	244, 599
Hpy188III	TCNNGA	1 cut(s)	344
Hpy8I	GTNNAC	2 cut(s)	43, 448
Hpy99I	CGWCG	1 cut(s)	10
HpyAV	CCTTC	6 cut(s)	214, 232, 309, 349, 374, 467
HpyCH4III	ACNGT	2 cut(s)	40, 96
HpyCH4V	TGCA	4 cut(s)	176, 302, 484, 626
HpyF10VI	GCNNNNNNNGC	4 cut(s)	337, 391, 542, 632
HpyF3I	CTNAG	6 cut(s)	74, 152, 158, 168, 327, 381
Hsp92II	CATG	4 cut(s)	67, 398, 536, 634
HspAI	GCGC	5 cut(s)	83, 148, 359, 400, 429
Ksp22I	TGATCA	1 cut(s)	456
Kzo9I	GATC	1 cut(s)	456
LmnI	GCTCC	3 cut(s)	60, 366, 390
LpnPI	CCDG	9 cut(s)	18, 64, 170, 195, 200, 322, 357, 482, 567
Lsp1109I	GCAGC	1 cut(s)	94
LweI	GCATC	2 cut(s)	145, 411
MaeI	CTAG	2 cut(s)	426, 588
MalI	GATC	1 cut(s)	458
MboI	GATC	1 cut(s)	456
MboII	GAAGA	1 cut(s)	105
MlsI	TGGCCA	1 cut(s)	467
MluCI	AATT	1 cut(s)	591
MluNI	TGGCCA	1 cut(s)	467
Mox20I	TGGCCA	1 cut(s)	467
MscI	TGGCCA	1 cut(s)	467
MseI	TTAA	1 cut(s)	390
Msp20I	TGGCCA	1 cut(s)	467
MspCI	CTTAAG	1 cut(s)	389
MwoI	GCNNNNNNNGC	4 cut(s)	337, 391, 542, 632
NcoI	CCATGG	1 cut(s)	630
NdeII	GATC	1 cut(s)	456
NheI	GCTAGC	1 cut(s)	425
NlaIII	CATG	4 cut(s)	67, 398, 536, 634
NlaIV	GGNNCC	1 cut(s)	202
NmeAIII	GCCGAG	1 cut(s)	633
PaeR7I	CTCGAG	1 cut(s)	414
PceI	AGGCCT	2 cut(s)	340, 372
PflMI	CCANNNNNTGG	1 cut(s)	57
PkrI	GCNGC	1 cut(s)	109
PpuMI	RGGWCCY	1 cut(s)	201
Psp5II	RGGWCCY	1 cut(s)	201
PspN4I	GGNNCC	1 cut(s)	202
PspPI	GGNCC	1 cut(s)	201
PspPPI	RGGWCCY	1 cut(s)	201
PspXI	VCTCGAGB	1 cut(s)	414
RsaI	GTAC	1 cut(s)	552
RsaNI	GTAC	1 cut(s)	551
SaqAI	TTAA	1 cut(s)	390
SatI	GCNGC	1 cut(s)	108
Sau3AI	GATC	1 cut(s)	456
Sau96I	GGNCC	1 cut(s)	201
SetI	ASST	3 cut(s)	80, 333, 387
SfaNI	GCATC	2 cut(s)	145, 411
Sfr274I	CTCGAG	1 cut(s)	414
SinI	GGWCC	1 cut(s)	201
SlaI	CTCGAG	1 cut(s)	414
SmlI	CTYRAG	2 cut(s)	389, 414
SmoI	CTYRAG	2 cut(s)	389, 414
Sse9I	AATT	1 cut(s)	591
SseBI	AGGCCT	2 cut(s)	340, 372
SsiI	CCGC	1 cut(s)	27
SspMI	CTAG	2 cut(s)	426, 588
StuI	AGGCCT	2 cut(s)	340, 372
StyI	CCWWGG	1 cut(s)	630
TaaI	ACNGT	2 cut(s)	40, 96
TaqI	TCGA	2 cut(s)	367, 415
TasI	AATT	1 cut(s)	591
Tru1I	TTAA	1 cut(s)	390
Tru9I	TTAA	1 cut(s)	390
TscAI	CASTG	4 cut(s)	45, 52, 214, 609
TseI	GCWGC	1 cut(s)	107
TspDTI	ATGAA	1 cut(s)	499
TspGWI	ACGGA	1 cut(s)	327
TspRI	CASTG	4 cut(s)	45, 52, 214, 609
Van91I	CCANNNNNTGG	1 cut(s)	57
Vha464I	CTTAAG	1 cut(s)	389
VpaK11BI	GGWCC	1 cut(s)	201
XagI	CCTNNNNNAGG	1 cut(s)	73
XcmI	CCANNNNNNNNNTGG	1 cut(s)	194
XhoI	CTCGAG	1 cut(s)	414
XspI	CTAG	2 cut(s)	426, 588

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.