Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0015209

Physical Location & Seq

Genomic Coordinates Reverse (-)

27276340 .. 27277895

Gene Structure 1556 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G300200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 669 bp

ATGGCGATGGCAATGGCGTTGGCAACGGCAACTGGAACAGTGGAAAGTGTTAGCAGCAGATGGAGCATGGCGTCTCTGAGGTCGGCGCTGCCTTCAACACCAGATAGGTGTACGGTTTCTGCATCCTCATCTTCTTCACCATGCGGGCATCGTAGCCCGCGCCTCAGCGTCAGCCTCAACCAGTCTCTCCACAAACCCCAATTTGGGTCCTTCACTGGTCTCTCTCCCCTAAATCCCCTGCTCTCGCTTGGCCTCTCCGAGTATACAAGTTTTGAGCATAACTTCACCATTATTGATAGTGGTGGCCGAATTTTGGCAATGAGACATGGCAGGAAAGTCCCTAAGCTCAACAGGCCTCCTGACCAACGAAAAGCACTTTTGCGAGGCCTCACTACTCAGCTCCTTAAACATGGCCGCATCAAGACCACTCGAGCAAGGGCAAGTGCAATGAGGAAGTACGTTGACAAAATGATCACACTGGCCAAGAATGGAACCCTTCATAAGAGGAGACAGGCTCTGGGCTTCATCTATGAAAAGCAGATTGTCCATGCCTTGTTTGCGGAGGTACCTGACAGATATGGGGAAAGAAATGGTGGTTATACAAGAATTATTAGAACACTGCCAAGGCGAGGGGACAATGCACCCATGGCATACATTGAACTTGTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003735 GO:0005198 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009941 GO:0015934 GO:0022625 GO:0022626 GO:0031967 GO:0031975 GO:0032991 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044391 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L17

Protein Analysis

223

Amino Acids

24.53

Weight (kDa)

11.06

Isoelectric Point (pI)

48.28

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015209)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G54210
fragaria_vesca	FvH4_6g09150
malus_domestica	MD12G1195700.v1.1
prunus_persica	Prupe.6G300200_v2.0.a1
pyrus_communis	pycom12g18190
rosa_chinensis	RchiOBHm_Chr3g0459361
rosa_laevigata	RLG00000025087
rosa_multiflora	Rmu_sc0006944.1_g000001
rosa_roxburghii	Rroxscaffold_6G00420230
rosa_rugosa	Rorug03G0035800.1 Rorug03G0036200
rosa_samantha	Rh3AG093800 Rh3BG096700 Rh3CG097900 Rh3DG097400
rosa_wichuraiana	Rw3G008070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	565
AccB1I	GGYRCC	1 cut(s)	565
AccI	GTMKAC	1 cut(s)	263
AccII	CGCG	1 cut(s)	160
AciI	CCGC	4 cut(s)	144, 158, 415, 560
AcoI	YGGCCR	3 cut(s)	304, 412, 480
AcsI	RAATTY	1 cut(s)	309
AcyI	GRCGYC	1 cut(s)	71
AfaI	GTAC	3 cut(s)	112, 458, 567
AfiI	CCNNNNNNNGG	4 cut(s)	203, 204, 313, 629
AgsI	TTSAA	2 cut(s)	96, 659
AluBI	AGCT	2 cut(s)	346, 400
AluI	AGCT	2 cut(s)	346, 400
Alw26I	GTCTC	5 cut(s)	78, 189, 224, 316, 502
AlwNI	CAGNNNCTG	1 cut(s)	517
Ama87I	CYCGRG	1 cut(s)	429
AoxI	GGCC	6 cut(s)	250, 304, 353, 385, 412, 480
ApeKI	GCWGC	2 cut(s)	54, 88
ApoI	RAATTY	1 cut(s)	309
Asp718I	GGTACC	1 cut(s)	565
AspLEI	GCGC	2 cut(s)	88, 162
AspS9I	GGNCC	1 cut(s)	207
AsuHPI	GGTGA	2 cut(s)	129, 277
AvaI	CYCGRG	1 cut(s)	429
AvaII	GGWCC	1 cut(s)	207
BalI	TGGCCA	1 cut(s)	482
BanI	GGYRCC	1 cut(s)	565
BbvCI	CCTCAGC	1 cut(s)	164
BbvI	GCAGC	2 cut(s)	66, 75
BccI	CCATC	1 cut(s)	54
BceAI	ACGGC	1 cut(s)	42
BclI	TGATCA	1 cut(s)	471
BcoDI	GTCTC	5 cut(s)	78, 189, 224, 316, 502
BfoI	RGCGCY	1 cut(s)	89
BisI	GCNGC	3 cut(s)	55, 89, 415
BlsI	GCNGC	3 cut(s)	56, 90, 416
Bme18I	GGWCC	1 cut(s)	207
BmeT110I	CYCGRG	1 cut(s)	429
BmgT120I	GGNCC	1 cut(s)	207
BmiI	GGNNCC	3 cut(s)	208, 493, 567
BmsI	GCATC	3 cut(s)	131, 157, 426
BplI	GAGNNNNNCTC	2 cut(s)	499, 531
Bpu10I	CCTNAGC	2 cut(s)	164, 342
BsaHI	GRCGYC	1 cut(s)	71
BsaI	GGTCTC	1 cut(s)	224
BsaJI	CCNNGG	2 cut(s)	623, 645
Bsc4I	CCNNNNNNNGG	4 cut(s)	203, 204, 313, 629
Bse1I	ACTGG	4 cut(s)	37, 181, 220, 483
Bse3DI	GCAATG	3 cut(s)	18, 324, 453
BseDI	CCNNGG	2 cut(s)	623, 645
BseGI	GGATG	1 cut(s)	122
BseLI	CCNNNNNNNGG	4 cut(s)	203, 204, 313, 629
BseMI	GCAATG	3 cut(s)	18, 324, 453
BseMII	CTCAG	3 cut(s)	68, 178, 410
BseNI	ACTGG	4 cut(s)	37, 181, 220, 483
BseRI	GAGGAG	1 cut(s)	520
BseXI	GCAGC	2 cut(s)	66, 75
Bsh1236I	CGCG	1 cut(s)	160
BshFI	GGCC	6 cut(s)	252, 306, 355, 387, 414, 482
BshNI	GGYRCC	1 cut(s)	565
BsiHKCI	CYCGRG	1 cut(s)	429
BslFI	GGGAC	2 cut(s)	323, 647
BslI	CCNNNNNNNGG	4 cut(s)	203, 204, 313, 629
BsmAI	GTCTC	5 cut(s)	78, 189, 224, 316, 502
BsmBI	CGTCTC	1 cut(s)	78
BsmFI	GGGAC	2 cut(s)	323, 647
BsnI	GGCC	6 cut(s)	252, 306, 355, 387, 414, 482
Bso31I	GGTCTC	1 cut(s)	224
BsoBI	CYCGRG	1 cut(s)	429
Bsp143I	GATC	1 cut(s)	471
Bsp19I	CCATGG	1 cut(s)	645
BspACI	CCGC	4 cut(s)	144, 158, 415, 560
BspANI	GGCC	6 cut(s)	252, 306, 355, 387, 414, 482
BspCNI	CTCAG	3 cut(s)	69, 177, 409
BspFNI	CGCG	1 cut(s)	160
BspLI	GGNNCC	3 cut(s)	208, 493, 567
BspT107I	GGYRCC	1 cut(s)	565
BspTNI	GGTCTC	1 cut(s)	224
BsrDI	GCAATG	3 cut(s)	18, 324, 453
BsrI	ACTGG	4 cut(s)	37, 181, 220, 483
BssECI	CCNNGG	2 cut(s)	623, 645
BssMI	GATC	1 cut(s)	471
BssNAI	GTATAC	1 cut(s)	264
BssNI	GRCGYC	1 cut(s)	71
BssT1I	CCWWGG	2 cut(s)	623, 645
Bst1107I	GTATAC	1 cut(s)	264
Bst4CI	ACNGT	2 cut(s)	40, 115
BstACI	GRCGYC	1 cut(s)	71
BstC8I	GCNNGC	2 cut(s)	146, 158
BstDEI	CTNAG	4 cut(s)	77, 164, 342, 396
BstDSI	CCRYGG	1 cut(s)	645
BstF5I	GGATG	1 cut(s)	122
BstFNI	CGCG	1 cut(s)	160
BstH2I	RGCGCY	1 cut(s)	89
BstHHI	GCGC	2 cut(s)	88, 162
BstKTI	GATC	1 cut(s)	474
BstMAI	GTCTC	5 cut(s)	78, 189, 224, 316, 502
BstMBI	GATC	1 cut(s)	471
BstMWI	GCNNNNNNNGC	4 cut(s)	63, 352, 557, 647
BstUI	CGCG	1 cut(s)	160
BstV1I	GCAGC	2 cut(s)	66, 75
BstZ17I	GTATAC	1 cut(s)	264
BsuRI	GGCC	6 cut(s)	252, 306, 355, 387, 414, 482
BtgI	CCRYGG	1 cut(s)	645
BtgZI	GCGATG	1 cut(s)	20
BtsCI	GGATG	1 cut(s)	122
BtsI	GCAGTG	1 cut(s)	617
BtsIMutI	CAGTG	4 cut(s)	45, 213, 476, 617
Cac8I	GCNNGC	2 cut(s)	146, 158
CaiI	CAGNNNCTG	1 cut(s)	517
CfoI	GCGC	2 cut(s)	88, 162
Cfr13I	GGNCC	1 cut(s)	207
CseI	GACGC	2 cut(s)	60, 157
Csp6I	GTAC	3 cut(s)	111, 457, 566
CviAII	CATG	6 cut(s)	67, 141, 326, 410, 548, 646
CviQI	GTAC	3 cut(s)	111, 457, 566
DdeI	CTNAG	4 cut(s)	77, 164, 342, 396
DpnI	GATC	1 cut(s)	473
DpnII	GATC	1 cut(s)	471
EaeI	YGGCCR	3 cut(s)	304, 412, 480
Eco130I	CCWWGG	2 cut(s)	623, 645
Eco147I	AGGCCT	2 cut(s)	355, 387
Eco31I	GGTCTC	1 cut(s)	224
Eco47I	GGWCC	1 cut(s)	207
Eco88I	CYCGRG	1 cut(s)	429
EcoO109I	RGGNCCY	1 cut(s)	207
EcoT14I	CCWWGG	2 cut(s)	623, 645
ErhI	CCWWGG	2 cut(s)	623, 645
Esp3I	CGTCTC	1 cut(s)	78
FaeI	CATG	6 cut(s)	70, 144, 329, 413, 551, 649
FaqI	GGGAC	2 cut(s)	323, 647
FatI	CATG	6 cut(s)	66, 140, 325, 409, 547, 645
FauI	CCCGC	2 cut(s)	137, 165
FbaI	TGATCA	1 cut(s)	471
FblI	GTMKAC	1 cut(s)	263
Fnu4HI	GCNGC	3 cut(s)	55, 89, 415
FokI	GGATG	1 cut(s)	109
Fsp4HI	GCNGC	3 cut(s)	55, 89, 415
GlaI	GCGC	2 cut(s)	87, 161
GluI	GCNGC	3 cut(s)	55, 89, 415
HaeII	RGCGCY	1 cut(s)	89
HaeIII	GGCC	6 cut(s)	252, 306, 355, 387, 414, 482
HgaI	GACGC	2 cut(s)	60, 157
HhaI	GCGC	2 cut(s)	88, 162
Hin1I	GRCGYC	1 cut(s)	71
Hin1II	CATG	6 cut(s)	70, 144, 329, 413, 551, 649
Hin6I	GCGC	2 cut(s)	86, 160
HinP1I	GCGC	2 cut(s)	86, 160
HincII	GTYRAC	1 cut(s)	463
HindII	GTYRAC	1 cut(s)	463
HphI	GGTGA	2 cut(s)	129, 277
Hpy166II	GTNNAC	3 cut(s)	111, 264, 463
Hpy188I	TCNGA	2 cut(s)	78, 259
Hpy188III	TCNNGA	2 cut(s)	359, 421
Hpy8I	GTNNAC	3 cut(s)	111, 264, 463
HpyAV	CCTTC	3 cut(s)	102, 220, 506
HpyCH4III	ACNGT	2 cut(s)	40, 115
HpyCH4IV	ACGT	1 cut(s)	459
HpyCH4V	TGCA	3 cut(s)	122, 446, 641
HpyF10VI	GCNNNNNNNGC	4 cut(s)	63, 352, 557, 647
HpyF3I	CTNAG	4 cut(s)	77, 164, 342, 396
HpySE526I	ACGT	1 cut(s)	459
Hsp92I	GRCGYC	1 cut(s)	71
Hsp92II	CATG	6 cut(s)	70, 144, 329, 413, 551, 649
HspAI	GCGC	2 cut(s)	86, 160
KpnI	GGTACC	1 cut(s)	569
Ksp22I	TGATCA	1 cut(s)	471
Kzo9I	GATC	1 cut(s)	471
LmnI	GCTCC	2 cut(s)	63, 405
Lsp1109I	GCAGC	2 cut(s)	66, 75
LweI	GCATC	3 cut(s)	131, 157, 426
MaeII	ACGT	1 cut(s)	459
MalI	GATC	1 cut(s)	473
MboI	GATC	1 cut(s)	471
MboII	GAAGA	2 cut(s)	123, 126
MlsI	TGGCCA	1 cut(s)	482
MluCI	AATT	3 cut(s)	200, 309, 606
MluNI	TGGCCA	1 cut(s)	482
Mox20I	TGGCCA	1 cut(s)	482
MscI	TGGCCA	1 cut(s)	482
MseI	TTAA	1 cut(s)	405
Msp20I	TGGCCA	1 cut(s)	482
MvnI	CGCG	1 cut(s)	160
MwoI	GCNNNNNNNGC	4 cut(s)	63, 352, 557, 647
NcoI	CCATGG	1 cut(s)	645
NdeII	GATC	1 cut(s)	471
NlaIII	CATG	6 cut(s)	70, 144, 329, 413, 551, 649
NlaIV	GGNNCC	3 cut(s)	208, 493, 567
PaeR7I	CTCGAG	1 cut(s)	429
PceI	AGGCCT	2 cut(s)	355, 387
PkrI	GCNGC	3 cut(s)	56, 90, 416
PpuMI	RGGWCCY	1 cut(s)	207
Psp5II	RGGWCCY	1 cut(s)	207
PspN4I	GGNNCC	3 cut(s)	208, 493, 567
PspPI	GGNCC	1 cut(s)	207
PspPPI	RGGWCCY	1 cut(s)	207
PspXI	VCTCGAGB	1 cut(s)	429
PstNI	CAGNNNCTG	1 cut(s)	517
RsaI	GTAC	3 cut(s)	112, 458, 567
RsaNI	GTAC	3 cut(s)	111, 457, 566
SaqAI	TTAA	1 cut(s)	405
SatI	GCNGC	3 cut(s)	55, 89, 415
Sau3AI	GATC	1 cut(s)	471
Sau96I	GGNCC	1 cut(s)	207
SetI	ASST	7 cut(s)	83, 110, 348, 402, 462, 567, 571
SfaNI	GCATC	3 cut(s)	131, 157, 426
Sfr274I	CTCGAG	1 cut(s)	429
SinI	GGWCC	1 cut(s)	207
SlaI	CTCGAG	1 cut(s)	429
SmlI	CTYRAG	1 cut(s)	429
SmoI	CTYRAG	1 cut(s)	429
Sse9I	AATT	3 cut(s)	200, 309, 606
SseBI	AGGCCT	2 cut(s)	355, 387
SsiI	CCGC	4 cut(s)	144, 158, 415, 560
StuI	AGGCCT	2 cut(s)	355, 387
StyI	CCWWGG	2 cut(s)	623, 645
TaaI	ACNGT	2 cut(s)	40, 115
TaiI	ACGT	1 cut(s)	462
TaqI	TCGA	1 cut(s)	430
TasI	AATT	3 cut(s)	200, 309, 606
TauI	GCSGC	1 cut(s)	417
Tru1I	TTAA	1 cut(s)	405
Tru9I	TTAA	1 cut(s)	405
TscAI	CASTG	4 cut(s)	45, 220, 483, 624
TseI	GCWGC	2 cut(s)	54, 88
TspDTI	ATGAA	3 cut(s)	488, 514, 546
TspRI	CASTG	4 cut(s)	45, 220, 483, 624
VpaK11BI	GGWCC	1 cut(s)	207
XapI	RAATTY	1 cut(s)	309
XhoI	CTCGAG	1 cut(s)	429
XmiI	GTMKAC	1 cut(s)	263

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.