AT3G54390
MYB Family

Myb/SANT-like DNA-binding domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0013444
Physical Location & Seq
Reverse (-)
20137577 .. 20139244
1668 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G54390.1

Sequence Viewer

Length: 891 bp
ATGGAGAACGGAGAATCTAACCAAGAAAATCTCAAATCTCTCAACCACGACGAATCGCTTAAGAAGCCATCTGCTTCCTCCGTCGTTGTAGATAGGTTAAAACGTGATGAATGGAGCGAAGGAGCTGTTTCGACTTTACTCGAAGCTTATGAGTCAAAATGGGTTCTCAGAAACAGAGCCAAGCTTAAGGGACAAGACTGGGAAGACGTGGCTAAACACGTGTCCTCACGCGCCACTCACACCAAGTCACCAAAGACTCAGACTCAGTGCAAGAACAAGATCGAGTCCATGAAGAAACGGTACCGTTCTGAGTCCGCTACTGCTGATGGCTCCTCTTGGCCTCTTTATCCTCGTCTTGATCATCTCCTACGTGGAACTCAGCCTCAGCCTCAGCCTCAAGCTGTTCTGCCTCTGAATTGCTCTGTTCCTCTGCTCTTACTTGAGCCGCCGTTGCCTGCGGTGGCTCATCCGCCGCAGATTTCTTACGGATCCAACGGCGTCGGCAAGATTCCTAAGGAAGACGGATTCAAGCCGGAGAACAAACCGGAAAAAGATGCGGAGATGGATACAGACAGTAGTACGCCTGTGGTTAAAACGAAGGTGAGAGGGAAGAAAGTGAAGAGAAGATATAAAGAAGAGAAGGAAGAGATCGCCGGAAGTATACGGTGGTTAGCGGAGGTGGTGATGAGATCAGAGAGAGCAAGAATGGAGACGATGAAAGAGATAGAGAGAATGAGAGCTGAAGCTGAAGCTAAGAGAGGAGAATTGGATTTGAAACGGACGGAGATAATGGCGAATACTCAGCTAGAGATTGCTAGAATCTTTGCTGCTGCAGCTTCTTCTGGACAGAACAAAGGTGTTGATTCTTCATTAAGGATCGGAAGAAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-bind_4

Protein Analysis

296

Amino Acids

33.28

Weight (kDa)

9.43

Isoelectric Point (pI)

47.28

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-bind_4 PF13837 35 - 122 3.8e-17 Myb/SANT-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013444)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G54390 AT3G54390
fragaria_vesca FvH4_7g03380
malus_domestica MD02G1283400.v1.1 MD07G1048900.v1.1
prunus_persica Prupe.2G039000_v2.0.a1
pyrus_communis pycom02g24150 pycom07g03550
rosa_chinensis RchiOBHm_Chr1g0325721
rosa_laevigata RLG00000030111
rosa_multiflora Rmu_sc0000703.1_g000004
rosa_roxburghii Rroxscaffold_4G00324450
rosa_rugosa Rorug01G0053900
rosa_samantha Rh1AG069600 Rh1BG056900 Rh1CG070100 Rh1DG074700
rosa_wichuraiana Rw1G005750

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 300
AccB1I GGYRCC 1 cut(s) 300
AccI GTMKAC 1 cut(s) 661
AccII CGCG 1 cut(s) 231
AciI CCGC 7 cut(s) 315, 446, 458, 470, 473, 557, 674
AclWI GGATC 3 cut(s) 483, 496, 884
AcuI CTGAAG 2 cut(s) 762, 768
AcvI CACGTG 1 cut(s) 220
AcyI GRCGYC 1 cut(s) 498
AfaI GTAC 2 cut(s) 302, 580
AflII CTTAAG 2 cut(s) 59, 185
AflIII ACRYGT 2 cut(s) 217, 219
AgsI TTSAA 2 cut(s) 529, 775
AjiI CACGTC 1 cut(s) 208
AluBI AGCT 9 cut(s) 125, 146, 184, 401, 740, 746, 752, 805, 836
AluI AGCT 9 cut(s) 125, 146, 184, 401, 740, 746, 752, 805, 836
Alw26I GTCTC 1 cut(s) 704
AlwI GGATC 3 cut(s) 483, 496, 884
AoxI GGCC 1 cut(s) 338
ApeKI GCWGC 3 cut(s) 827, 830, 833
Asp718I GGTACC 1 cut(s) 300
AspLEI GCGC 1 cut(s) 233
AsuHPI GGTGA 3 cut(s) 240, 613, 694
AxyI CCTNAGG 1 cut(s) 513
BamHI GGATCC 1 cut(s) 488
BanI GGYRCC 1 cut(s) 300
BarI GAAGNNNNNNTAC 2 cut(s) 284, 316
BbrPI CACGTG 1 cut(s) 220
BbsI GAAGAC 2 cut(s) 210, 525
BbvCI CCTCAGC 2 cut(s) 384, 390
BbvI GCAGC 3 cut(s) 814, 817, 845
BccI CCATC 3 cut(s) 76, 320, 556
BceAI ACGGC 2 cut(s) 433, 511
BciVI GTATCC 1 cut(s) 559
BclI TGATCA 1 cut(s) 358
BcoDI GTCTC 1 cut(s) 704
BfaI CTAG 2 cut(s) 806, 816
BfmI CTRYAG 1 cut(s) 831
BfrI CTTAAG 2 cut(s) 59, 185
BfuI GTATCC 1 cut(s) 559
BisI GCNGC 5 cut(s) 446, 473, 828, 831, 834
BlsI GCNGC 5 cut(s) 447, 474, 829, 832, 835
BmgBI CACGTC 1 cut(s) 208
BmiI GGNNCC 3 cut(s) 302, 331, 490
BmrI ACTGGG 1 cut(s) 208
BmsI GCATC 1 cut(s) 544
BmuI ACTGGG 1 cut(s) 208
BpiI GAAGAC 2 cut(s) 210, 525
Bpu10I CCTNAGC 2 cut(s) 384, 390
BpuEI CTTGAG 2 cut(s) 381, 461
BsaAI YACGTR 2 cut(s) 220, 371
BsaHI GRCGYC 1 cut(s) 498
BsaWI WCCGGW 1 cut(s) 544
Bse1I ACTGG 1 cut(s) 203
Bse21I CCTNAGG 1 cut(s) 513
BseGI GGATG 1 cut(s) 466
BseMII CTCAG 8 cut(s) 181, 272, 278, 300, 392, 398, 404, 815
BseNI ACTGG 1 cut(s) 203
BseRI GAGGAG 2 cut(s) 322, 774
BseXI GCAGC 3 cut(s) 814, 817, 845
Bsh1236I CGCG 1 cut(s) 231
BshFI GGCC 1 cut(s) 340
BshNI GGYRCC 1 cut(s) 300
BsiSI CCGG 3 cut(s) 533, 545, 654
BslFI GGGAC 1 cut(s) 204
BsmAI GTCTC 1 cut(s) 704
BsmBI CGTCTC 1 cut(s) 704
BsmFI GGGAC 1 cut(s) 204
BsnI GGCC 1 cut(s) 340
Bsp143I GATC 6 cut(s) 279, 358, 488, 648, 689, 876
BspACI CCGC 7 cut(s) 315, 446, 458, 470, 473, 557, 674
BspANI GGCC 1 cut(s) 340
BspCNI CTCAG 8 cut(s) 180, 271, 277, 301, 391, 397, 403, 814
BspFNI CGCG 1 cut(s) 231
BspLI GGNNCC 3 cut(s) 302, 331, 490
BspMAI CTGCAG 1 cut(s) 835
BspPI GGATC 3 cut(s) 483, 496, 884
BspT107I GGYRCC 1 cut(s) 300
BspTI CTTAAG 2 cut(s) 59, 185
BsrI ACTGG 1 cut(s) 203
BssMI GATC 6 cut(s) 279, 358, 488, 648, 689, 876
BssNAI GTATAC 1 cut(s) 662
BssNI GRCGYC 1 cut(s) 498
Bst1107I GTATAC 1 cut(s) 662
Bst4CI ACNGT 4 cut(s) 300, 305, 575, 666
Bst6I CTCTTC 3 cut(s) 614, 630, 639
BstACI GRCGYC 1 cut(s) 498
BstAFI CTTAAG 2 cut(s) 59, 185
BstBAI YACGTR 2 cut(s) 220, 371
BstC8I GCNNGC 1 cut(s) 456
BstF5I GGATG 1 cut(s) 466
BstFNI CGCG 1 cut(s) 231
BstHHI GCGC 1 cut(s) 233
BstKTI GATC 6 cut(s) 282, 361, 491, 651, 692, 879
BstMAI GTCTC 1 cut(s) 704
BstMBI GATC 6 cut(s) 279, 358, 488, 648, 689, 876
BstMWI GCNNNNNNNGC 3 cut(s) 64, 451, 833
BstSFI CTRYAG 1 cut(s) 831
BstUI CGCG 1 cut(s) 231
BstV1I GCAGC 3 cut(s) 814, 817, 845
BstV2I GAAGAC 2 cut(s) 210, 525
BstX2I RGATCY 1 cut(s) 488
BstYI RGATCY 1 cut(s) 488
BstZ17I GTATAC 1 cut(s) 662
Bsu36I CCTNAGG 1 cut(s) 513
BsuI GTATCC 1 cut(s) 559
BsuRI GGCC 1 cut(s) 340
BtrI CACGTC 1 cut(s) 208
BtsCI GGATG 1 cut(s) 466
BtsIMutI CAGTG 1 cut(s) 272
Cac8I GCNNGC 1 cut(s) 456
CfoI GCGC 1 cut(s) 233
CseI GACGC 1 cut(s) 487
Csp6I GTAC 2 cut(s) 301, 579
CviAII CATG 1 cut(s) 289
CviQI GTAC 2 cut(s) 301, 579
DpnI GATC 6 cut(s) 281, 360, 490, 650, 691, 878
DpnII GATC 6 cut(s) 279, 358, 488, 648, 689, 876
Eam1104I CTCTTC 3 cut(s) 614, 630, 639
EarI CTCTTC 3 cut(s) 614, 630, 639
EciI GGCGGA 1 cut(s) 459
Eco57I CTGAAG 2 cut(s) 762, 768
Eco72I CACGTG 1 cut(s) 220
Eco81I CCTNAGG 1 cut(s) 513
Esp3I CGTCTC 1 cut(s) 704
FaeI CATG 1 cut(s) 292
FaiI YATR 4 cut(s) 150, 290, 630, 662
FaqI GGGAC 1 cut(s) 204
FatI CATG 1 cut(s) 288
FbaI TGATCA 1 cut(s) 358
FblI GTMKAC 1 cut(s) 661
Fnu4HI GCNGC 5 cut(s) 446, 473, 828, 831, 834
FokI GGATG 1 cut(s) 453
Fsp4HI GCNGC 5 cut(s) 446, 473, 828, 831, 834
FspBI CTAG 2 cut(s) 806, 816
GlaI GCGC 1 cut(s) 232
GluI GCNGC 5 cut(s) 446, 473, 828, 831, 834
HaeIII GGCC 1 cut(s) 340
HapII CCGG 3 cut(s) 533, 545, 654
HgaI GACGC 1 cut(s) 487
HhaI GCGC 1 cut(s) 233
Hin1I GRCGYC 1 cut(s) 498
Hin1II CATG 1 cut(s) 292
Hin6I GCGC 1 cut(s) 231
HinP1I GCGC 1 cut(s) 231
HindIII AAGCTT 2 cut(s) 144, 182
HpaII CCGG 3 cut(s) 533, 545, 654
HphI GGTGA 3 cut(s) 240, 613, 694
Hpy166II GTNNAC 1 cut(s) 662
Hpy188I TCNGA 6 cut(s) 170, 261, 310, 414, 694, 881
Hpy188III TCNNGA 2 cut(s) 356, 843
Hpy8I GTNNAC 1 cut(s) 662
Hpy99I CGWCG 3 cut(s) 53, 86, 503
HpyAV CCTTC 3 cut(s) 113, 592, 634
HpyCH4III ACNGT 4 cut(s) 300, 305, 575, 666
HpyCH4IV ACGT 4 cut(s) 103, 207, 219, 370
HpyCH4V TGCA 2 cut(s) 270, 833
HpyF10VI GCNNNNNNNGC 3 cut(s) 64, 451, 833
HpySE526I ACGT 4 cut(s) 103, 207, 219, 370
Hsp92I GRCGYC 1 cut(s) 498
Hsp92II CATG 1 cut(s) 292
HspAI GCGC 1 cut(s) 231
KpnI GGTACC 1 cut(s) 304
Ksp22I TGATCA 1 cut(s) 358
Kzo9I GATC 6 cut(s) 279, 358, 488, 648, 689, 876
LmnI GCTCC 3 cut(s) 114, 122, 335
LpnPI CCDG 7 cut(s) 184, 468, 546, 558, 597, 667, 828
Lsp1109I GCAGC 3 cut(s) 814, 817, 845
LweI GCATC 1 cut(s) 544
MaeI CTAG 2 cut(s) 806, 816
MaeII ACGT 4 cut(s) 103, 207, 219, 370
MaeIII GTNAC 1 cut(s) 246
MalI GATC 6 cut(s) 281, 360, 490, 650, 691, 878
MboI GATC 6 cut(s) 279, 358, 488, 648, 689, 876
MflI RGATCY 1 cut(s) 488
MluCI AATT 3 cut(s) 415, 764, 886
MlyI GAGTC 5 cut(s) 161, 250, 256, 293, 320
MmeI TCCRAC 1 cut(s) 516
MseI TTAA 5 cut(s) 60, 98, 186, 591, 872
MspCI CTTAAG 2 cut(s) 59, 185
MspI CCGG 3 cut(s) 533, 545, 654
MvnI CGCG 1 cut(s) 231
MwoI GCNNNNNNNGC 3 cut(s) 64, 451, 833
NdeII GATC 6 cut(s) 279, 358, 488, 648, 689, 876
NlaIII CATG 1 cut(s) 292
NlaIV GGNNCC 3 cut(s) 302, 331, 490
NmuCI GTSAC 1 cut(s) 246
PfeI GAWTC 6 cut(s) 14, 53, 508, 525, 819, 863
PkrI GCNGC 5 cut(s) 447, 474, 829, 832, 835
PleI GAGTC 5 cut(s) 160, 250, 256, 292, 319
PmaCI CACGTG 1 cut(s) 220
PmlI CACGTG 1 cut(s) 220
PpsI GAGTC 5 cut(s) 160, 250, 256, 292, 319
Ppu21I YACGTR 2 cut(s) 220, 371
PspCI CACGTG 1 cut(s) 220
PspN4I GGNNCC 3 cut(s) 302, 331, 490
PstI CTGCAG 1 cut(s) 835
PsuI RGATCY 1 cut(s) 488
RsaI GTAC 2 cut(s) 302, 580
RsaNI GTAC 2 cut(s) 301, 579
SaqAI TTAA 5 cut(s) 60, 98, 186, 591, 872
SatI GCNGC 5 cut(s) 446, 473, 828, 831, 834
Sau3AI GATC 6 cut(s) 279, 358, 488, 648, 689, 876
SchI GAGTC 5 cut(s) 161, 250, 256, 293, 320
SfaNI GCATC 1 cut(s) 544
SfcI CTRYAG 1 cut(s) 831
SmlI CTYRAG 4 cut(s) 59, 185, 396, 440
SmoI CTYRAG 4 cut(s) 59, 185, 396, 440
Sse9I AATT 3 cut(s) 415, 764, 886
SsiI CCGC 7 cut(s) 315, 446, 458, 470, 473, 557, 674
SspMI CTAG 2 cut(s) 806, 816
TaaI ACNGT 4 cut(s) 300, 305, 575, 666
TaiI ACGT 4 cut(s) 106, 210, 222, 373
TaqI TCGA 3 cut(s) 131, 141, 282
TasI AATT 3 cut(s) 415, 764, 886
TauI GCSGC 2 cut(s) 448, 475
TfiI GAWTC 6 cut(s) 14, 53, 508, 525, 819, 863
Tru1I TTAA 5 cut(s) 60, 98, 186, 591, 872
Tru9I TTAA 5 cut(s) 60, 98, 186, 591, 872
TscAI CASTG 1 cut(s) 272
TseFI GTSAC 1 cut(s) 246
TseI GCWGC 3 cut(s) 827, 830, 833
Tsp45I GTSAC 1 cut(s) 246
TspDTI ATGAA 4 cut(s) 123, 305, 731, 858
TspGWI ACGGA 6 cut(s) 24, 70, 501, 537, 793, 797
TspRI CASTG 1 cut(s) 272
Vha464I CTTAAG 2 cut(s) 59, 185
XmiI GTMKAC 1 cut(s) 661
XspI CTAG 2 cut(s) 806, 816
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.