Prupe.2G039000_v2.0.a1
MYB Family

Myb/SANT-like DNA-binding domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp02
OG0013444
Physical Location & Seq
Forward (+)
4205544 .. 4208256
2713 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.2G039000.1

Sequence Viewer

Length: 1053 bp
ATGGACAACGAAACTAACCAAGAAAACCCATCTCTCCCCCCAAACAATTACACCTCCACAACCAAGGAATTAGAGTCTCCAAGATCAAAACCCCAACAACCTCTTGGTGTTGGTGGCAGCAGTGACAGGCTAAAAAGAGATGAGTGGAGTGAAGGAGCAGTTTCTAGCCTCCTTGAGGCCTATGAGACCAAATGGGTTCTCAGAAACAGAGCAAAACTCAAAGGCCATGATTGGGAAGATGTTGCAAGACATGTCTCGTCTCGTGCCAATTGTACCAAGTCCCCCAAGACTCAAACCCAGTGCAAGAACAAGATTGAGTCCATGAAGAAACGATACCGTTCTGAGTCTGCCACTGCTGATGGTTCATCATGGCCTCTCTATCCACGGCTTGATCTTCTGCTACGTGGCAGTGGGCCATCCCCAACAGCAGCATCAGCAGCAGCAACTGTAACAGCTGCAGCTATACCACCACCACCACCACCACCACCACTGCCAGTACAATTGCCTCCTCCGCCGCCTCAGAACAATCATCCTTTGATGCTACTGGAGCCATCAGTGTCGCTGCCGCCACAGCCACCACCTACTGCTCCTCCTCAACCTATAGGAACTGCCCAAAATTCATATGGATCCAATGGTGTTGATCATAGGGTGGCCAAGGAAGATGGAATGGGGATGAAATTGTCAGATCATGCATCAGACAAGAACCCTTTGGAGATAGACAGTAGCACCCCAGCTCTTTACAGTGACAAGGAAAAATTAAGGTCCAAGAGAATGAAGAGGAAGATAGAGAAAAAGAAGCGGCGAAGACGGGAGGAAGTAGAGATAGCAGAGAGCATAAGATGGTTAGCAGAGGTTGTGGTGAGATCAGAGCAAGCAAGAATGGACACAATGAGAGAGATAGAGAGGATGAGAGTTGAGGCAGAGGCTAAGAGAGGAGAAATGGATCTCAAGCGCACAGAAATTATTGCCAATACACAGTTGGAGATTGCAAGGCTCTTTGCAGCTGGTGTTGGCAAAGGGGTTGATTCTTCTTTAAGAATTGGAAGAAGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-bind_4

Protein Analysis

351

Amino Acids

38.78

Weight (kDa)

9.55

Isoelectric Point (pI)

64.56

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013444)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G54390 AT3G54390
fragaria_vesca FvH4_7g03380
malus_domestica MD02G1283400.v1.1 MD07G1048900.v1.1
prunus_persica Prupe.2G039000_v2.0.a1
pyrus_communis pycom02g24150 pycom07g03550
rosa_chinensis RchiOBHm_Chr1g0325721
rosa_laevigata RLG00000030111
rosa_multiflora Rmu_sc0000703.1_g000004
rosa_roxburghii Rroxscaffold_4G00324450
rosa_rugosa Rorug01G0053900
rosa_samantha Rh1AG069600 Rh1BG056900 Rh1CG070100 Rh1DG074700
rosa_wichuraiana Rw1G005750

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 4 cut(s) 512, 515, 566, 799
AclWI GGATC 3 cut(s) 621, 634, 951
AcoI YGGCCR 1 cut(s) 651
AcsI RAATTY 1 cut(s) 616
AfaI GTAC 2 cut(s) 274, 498
AfiI CCNNNNNNNGG 2 cut(s) 175, 232
AflIII ACRYGT 1 cut(s) 250
AluBI AGCT 4 cut(s) 455, 461, 734, 1004
AluI AGCT 4 cut(s) 455, 461, 734, 1004
Alw26I GTCTC 4 cut(s) 81, 179, 259, 264
AlwI GGATC 3 cut(s) 621, 634, 951
AlwNI CAGNNNCTG 1 cut(s) 446
AoxI GGCC 5 cut(s) 177, 223, 371, 413, 651
ApeKI GCWGC 8 cut(s) 117, 428, 437, 440, 455, 458, 562, 1001
ApoI RAATTY 1 cut(s) 616
AspLEI GCGC 1 cut(s) 954
AspS9I GGNCC 2 cut(s) 413, 762
AsuHPI GGTGA 1 cut(s) 871
AvaII GGWCC 1 cut(s) 762
BalI TGGCCA 1 cut(s) 653
BamHI GGATCC 1 cut(s) 626
BarI GAAGNNNNNNTAC 2 cut(s) 317, 349
BauI CACGAG 1 cut(s) 261
BbsI GAAGAC 1 cut(s) 811
BbvI GCAGC 8 cut(s) 129, 440, 442, 449, 452, 470, 549, 1013
BccI CCATC 6 cut(s) 37, 353, 424, 559, 656, 834
BceAI ACGGC 1 cut(s) 401
BclI TGATCA 1 cut(s) 640
BcoDI GTCTC 4 cut(s) 81, 179, 259, 264
BfaI CTAG 1 cut(s) 165
BfmI CTRYAG 2 cut(s) 456, 600
Bme18I GGWCC 1 cut(s) 762
BmgT120I GGNCC 2 cut(s) 413, 762
BmiI GGNNCC 2 cut(s) 549, 628
BmrI ACTGGG 1 cut(s) 292
BmsI GCATC 3 cut(s) 440, 528, 701
BmuI ACTGGG 1 cut(s) 292
BpiI GAAGAC 1 cut(s) 811
BplI GAGNNNNNCTC 2 cut(s) 201, 233
BpmI CTGGAG 1 cut(s) 566
BpuEI CTTGAG 2 cut(s) 194, 932
BsaAI YACGTR 1 cut(s) 404
BsaI GGTCTC 1 cut(s) 179
BsaJI CCNNGG 3 cut(s) 63, 383, 654
BsaXI ACNNNNNCTCC 2 cut(s) 574, 604
Bsc4I CCNNNNNNNGG 2 cut(s) 175, 232
Bse1I ACTGG 3 cut(s) 298, 494, 549
BseDI CCNNGG 3 cut(s) 63, 383, 654
BseGI GGATG 4 cut(s) 416, 529, 678, 912
BseLI CCNNNNNNNGG 2 cut(s) 175, 232
BseMII CTCAG 3 cut(s) 214, 333, 533
BseNI ACTGG 3 cut(s) 298, 494, 549
BseRI GAGGAG 4 cut(s) 498, 579, 582, 948
BseXI GCAGC 8 cut(s) 129, 440, 442, 449, 452, 470, 549, 1013
BseYI CCCAGC 1 cut(s) 730
BshFI GGCC 5 cut(s) 179, 225, 373, 415, 653
BslFI GGGAC 1 cut(s) 265
BslI CCNNNNNNNGG 2 cut(s) 175, 232
BsmAI GTCTC 4 cut(s) 81, 179, 259, 264
BsmBI CGTCTC 1 cut(s) 264
BsmFI GGGAC 1 cut(s) 265
BsnI GGCC 5 cut(s) 179, 225, 373, 415, 653
Bso31I GGTCTC 1 cut(s) 179
Bsp143I GATC 7 cut(s) 83, 391, 626, 640, 685, 863, 943
BspACI CCGC 4 cut(s) 512, 515, 566, 799
BspANI GGCC 5 cut(s) 179, 225, 373, 415, 653
BspCNI CTCAG 3 cut(s) 213, 334, 532
BspLI GGNNCC 2 cut(s) 549, 628
BspMAI CTGCAG 1 cut(s) 460
BspPI GGATC 3 cut(s) 621, 634, 951
BspTNI GGTCTC 1 cut(s) 179
BsrI ACTGG 3 cut(s) 298, 494, 549
BssECI CCNNGG 3 cut(s) 63, 383, 654
BssMI GATC 7 cut(s) 83, 391, 626, 640, 685, 863, 943
BssSI CACGAG 1 cut(s) 261
BssT1I CCWWGG 2 cut(s) 63, 654
Bst2BI CACGAG 1 cut(s) 261
Bst4CI ACNGT 5 cut(s) 338, 448, 722, 743, 978
Bst6I CTCTTC 1 cut(s) 770
BstBAI YACGTR 1 cut(s) 404
BstC8I GCNNGC 1 cut(s) 873
BstDEI CTNAG 4 cut(s) 200, 342, 519, 927
BstDSI CCRYGG 1 cut(s) 383
BstENI CCTNNNNNAGG 1 cut(s) 173
BstF5I GGATG 4 cut(s) 416, 529, 678, 912
BstHHI GCGC 1 cut(s) 954
BstKTI GATC 7 cut(s) 86, 394, 629, 643, 688, 866, 946
BstMAI GTCTC 4 cut(s) 81, 179, 259, 264
BstMBI GATC 7 cut(s) 83, 391, 626, 640, 685, 863, 943
BstMWI GCNNNNNNNGC 5 cut(s) 434, 437, 511, 547, 571
BstNSI RCATGY 1 cut(s) 254
BstSFI CTRYAG 2 cut(s) 456, 600
BstV1I GCAGC 8 cut(s) 129, 440, 442, 449, 452, 470, 549, 1013
BstV2I GAAGAC 1 cut(s) 811
BstX2I RGATCY 2 cut(s) 626, 943
BstYI RGATCY 2 cut(s) 626, 943
BsuRI GGCC 5 cut(s) 179, 225, 373, 415, 653
BtgI CCRYGG 1 cut(s) 383
BtsCI GGATG 4 cut(s) 416, 529, 678, 912
BtsI GCAGTG 4 cut(s) 127, 351, 415, 488
BtsIMutI CAGTG 7 cut(s) 127, 305, 351, 415, 488, 561, 748
Cac8I GCNNGC 1 cut(s) 873
CaiI CAGNNNCTG 1 cut(s) 446
CfoI GCGC 1 cut(s) 954
Cfr13I GGNCC 2 cut(s) 413, 762
Csp6I GTAC 2 cut(s) 273, 497
CviAII CATG 5 cut(s) 227, 251, 322, 369, 689
CviQI GTAC 2 cut(s) 273, 497
DdeI CTNAG 4 cut(s) 200, 342, 519, 927
DpnI GATC 7 cut(s) 85, 393, 628, 642, 687, 865, 945
DpnII GATC 7 cut(s) 83, 391, 626, 640, 685, 863, 943
EaeI YGGCCR 1 cut(s) 651
Eam1104I CTCTTC 1 cut(s) 770
EarI CTCTTC 1 cut(s) 770
EciI GGCGGA 1 cut(s) 501
Eco130I CCWWGG 2 cut(s) 63, 654
Eco147I AGGCCT 1 cut(s) 179
Eco31I GGTCTC 1 cut(s) 179
Eco47I GGWCC 1 cut(s) 762
EcoNI CCTNNNNNAGG 1 cut(s) 173
EcoT14I CCWWGG 2 cut(s) 63, 654
EcoT22I ATGCAT 1 cut(s) 694
ErhI CCWWGG 2 cut(s) 63, 654
Esp3I CGTCTC 1 cut(s) 264
FaeI CATG 5 cut(s) 230, 254, 325, 372, 692
FaqI GGGAC 1 cut(s) 265
FatI CATG 5 cut(s) 226, 250, 321, 368, 688
FauNDI CATATG 1 cut(s) 622
FbaI TGATCA 1 cut(s) 640
FokI GGATG 4 cut(s) 403, 516, 685, 919
FspBI CTAG 1 cut(s) 165
GlaI GCGC 1 cut(s) 953
GsaI CCCAGC 1 cut(s) 734
GsuI CTGGAG 1 cut(s) 566
HaeIII GGCC 5 cut(s) 179, 225, 373, 415, 653
HhaI GCGC 1 cut(s) 954
Hin1II CATG 5 cut(s) 230, 254, 325, 372, 692
Hin6I GCGC 1 cut(s) 952
HinP1I GCGC 1 cut(s) 952
HinfI GANTC 5 cut(s) 74, 289, 317, 344, 1025
HphI GGTGA 1 cut(s) 871
Hpy188I TCNGA 6 cut(s) 203, 343, 522, 685, 697, 868
HpyAV CCTTC 1 cut(s) 146
HpyCH4III ACNGT 5 cut(s) 338, 448, 722, 743, 978
HpyCH4IV ACGT 1 cut(s) 403
HpyCH4V TGCA 6 cut(s) 245, 303, 458, 692, 989, 1001
HpyF10VI GCNNNNNNNGC 5 cut(s) 434, 437, 511, 547, 571
HpyF3I CTNAG 4 cut(s) 200, 342, 519, 927
HpySE526I ACGT 1 cut(s) 403
Hsp92II CATG 5 cut(s) 230, 254, 325, 372, 692
HspAI GCGC 1 cut(s) 952
Ksp22I TGATCA 1 cut(s) 640
Kzo9I GATC 7 cut(s) 83, 391, 626, 640, 685, 863, 943
LmnI GCTCC 3 cut(s) 155, 547, 592
LpnPI CCDG 6 cut(s) 112, 311, 507, 530, 744, 990
Lsp1109I GCAGC 8 cut(s) 129, 440, 442, 449, 452, 470, 549, 1013
LweI GCATC 3 cut(s) 440, 528, 701
MaeI CTAG 1 cut(s) 165
MaeII ACGT 1 cut(s) 403
MaeIII GTNAC 3 cut(s) 122, 448, 743
MalI GATC 7 cut(s) 85, 393, 628, 642, 687, 865, 945
MboI GATC 7 cut(s) 83, 391, 626, 640, 685, 863, 943
MboII GAAGA 8 cut(s) 248, 337, 386, 671, 787, 793, 816, 1020
MfeI CAATTG 2 cut(s) 268, 500
MflI RGATCY 2 cut(s) 626, 943
MlsI TGGCCA 1 cut(s) 653
MluCI AATT 9 cut(s) 46, 68, 268, 500, 616, 677, 755, 960, 1038
MluNI TGGCCA 1 cut(s) 653
MlyI GAGTC 4 cut(s) 83, 283, 326, 353
MmeI TCCRAC 1 cut(s) 960
Mox20I TGGCCA 1 cut(s) 653
Mph1103I ATGCAT 1 cut(s) 694
MscI TGGCCA 1 cut(s) 653
MseI TTAA 2 cut(s) 758, 1034
Msp20I TGGCCA 1 cut(s) 653
MspA1I CMGCKG 2 cut(s) 455, 1004
MunI CAATTG 2 cut(s) 268, 500
MwoI GCNNNNNNNGC 5 cut(s) 434, 437, 511, 547, 571
NdeI CATATG 1 cut(s) 622
NdeII GATC 7 cut(s) 83, 391, 626, 640, 685, 863, 943
NlaIII CATG 5 cut(s) 230, 254, 325, 372, 692
NlaIV GGNNCC 2 cut(s) 549, 628
NmuCI GTSAC 2 cut(s) 122, 743
NsiI ATGCAT 1 cut(s) 694
NspI RCATGY 1 cut(s) 254
PceI AGGCCT 1 cut(s) 179
PciI ACATGT 1 cut(s) 250
PfeI GAWTC 1 cut(s) 1025
PleI GAGTC 4 cut(s) 82, 283, 325, 352
PpsI GAGTC 4 cut(s) 82, 283, 325, 352
Ppu21I YACGTR 1 cut(s) 404
PscI ACATGT 1 cut(s) 250
PspFI CCCAGC 1 cut(s) 730
PspN4I GGNNCC 2 cut(s) 549, 628
PspPI GGNCC 2 cut(s) 413, 762
PstI CTGCAG 1 cut(s) 460
PstNI CAGNNNCTG 1 cut(s) 446
PsuI RGATCY 2 cut(s) 626, 943
PvuII CAGCTG 2 cut(s) 455, 1004
RsaI GTAC 2 cut(s) 274, 498
RsaNI GTAC 2 cut(s) 273, 497
SaqAI TTAA 2 cut(s) 758, 1034
Sau3AI GATC 7 cut(s) 83, 391, 626, 640, 685, 863, 943
Sau96I GGNCC 2 cut(s) 413, 762
SchI GAGTC 4 cut(s) 83, 283, 326, 353
SfaNI GCATC 3 cut(s) 440, 528, 701
SfcI CTRYAG 2 cut(s) 456, 600
SinI GGWCC 1 cut(s) 762
SmlI CTYRAG 2 cut(s) 173, 947
SmoI CTYRAG 2 cut(s) 173, 947
Sse9I AATT 9 cut(s) 46, 68, 268, 500, 616, 677, 755, 960, 1038
SseBI AGGCCT 1 cut(s) 179
SsiI CCGC 4 cut(s) 512, 515, 566, 799
SspMI CTAG 1 cut(s) 165
StuI AGGCCT 1 cut(s) 179
StyI CCWWGG 2 cut(s) 63, 654
TaaI ACNGT 5 cut(s) 338, 448, 722, 743, 978
TaiI ACGT 1 cut(s) 406
TasI AATT 9 cut(s) 46, 68, 268, 500, 616, 677, 755, 960, 1038
TatI WGTACW 1 cut(s) 496
TauI GCSGC 3 cut(s) 517, 568, 802
TfiI GAWTC 1 cut(s) 1025
Tru1I TTAA 2 cut(s) 758, 1034
Tru9I TTAA 2 cut(s) 758, 1034
TscAI CASTG 7 cut(s) 127, 305, 358, 415, 495, 561, 748
TseFI GTSAC 2 cut(s) 122, 743
TseI GCWGC 8 cut(s) 117, 428, 437, 440, 455, 458, 562, 1001
Tsp45I GTSAC 2 cut(s) 122, 743
TspDTI ATGAA 5 cut(s) 338, 354, 609, 689, 788
TspRI CASTG 7 cut(s) 127, 305, 358, 415, 495, 561, 748
VpaK11BI GGWCC 1 cut(s) 762
XagI CCTNNNNNAGG 1 cut(s) 173
XapI RAATTY 1 cut(s) 616
XceI RCATGY 1 cut(s) 254
XcmI CCANNNNNNNNNTGG 3 cut(s) 101, 620, 976
XspI CTAG 1 cut(s) 165
Zsp2I ATGCAT 1 cut(s) 694
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.