Rh1BG056900
MYB Family

Myb/SANT-like DNA-binding domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1B
OG0013444
Physical Location & Seq
Forward (+)
8476770 .. 8480049
3280 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1BG056900.1

Sequence Viewer

Length: 1014 bp
ATGGAGAAAGAGGGTAACCAGGATCAAAACCCATCTCTCCTCTCTAACAATTTGGAGTCTCCAAGATCAAAACCCTTGATTGGTAGTGACAGGCTGAAGAGAGATGAGTGGAGTGAAGGAGCTGTGTCTAGTCTTCTGGAGGCTTATGAGGCCAAATGGGTTCTCAGAAACAGAGCCAAGCTCAAAGGCCATGACTGGGAAGATGTAGCCAGACACGTCTCGTCGCGCGCCAGCTGCTCTAAGTCCCCCAAGACTCAGACGCAGTGCAAGAACAAGATTGAGTCCATGAAGAAACGCTACCGTTCCGAGTCGGCCACGGCTGATGGCTCATCTTGGCCTCTCTATCCAAGACTTGATCTTTTGTTGCGTGGCAGCGGACCACCTCCACCCACAGCAGCAGCAACTGTTGTAGCAGCTGTAGCTACTTCACCGGCACCGCCGCAACAACCACCGCTATCGGCTCCTCTGGCTCATCATAGCAACCACGCTCTGATGCTATTGGAGCCATCAGTGCCGGTGTCATCGCCGCCTCAACCACCGCCTCCACAGCCACCTCCGCCACATTTAGGAACTGCCCAAAATTCATACGGGTCCGATGGTGTTGATAGGGATGCCAAGGAAGATGGAGTGGGGATGAAATTATCAGACCATGCATCAGACAAGAACCCATTGGAGATAGACAGTAGCACACCAGCCCTTTATAGTGATAAGGAAAAGTTAAGGTCCAAGAGAATGAAGAGGAAAATCGAGAAGAAGACGCGAAGAAGAAGGGAGGAATTAGAGATAGCCGAGAGCATAAGATGGTTAGCCGAGGTTGTGGTAAGATCCGAGCAATCACGAATGGACACAATGAGAGACATAGAGAGGATGAGAGTTGAAGCGGAGGCCAAGAGAGGAGAGATGGATCTGAAGCGCACAGAAATTATTGCCAATACCCAGTTGGAGATTGCAAGGATCTTTGCTGCTGGTGTTGGCAAAGGTGTTGATTCTTCACTAAGAATTGGAAGAAGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-bind_4

Protein Analysis

337

Amino Acids

37.32

Weight (kDa)

9.44

Isoelectric Point (pI)

64.87

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-bind_4 PF13837 34 - 120 2.9e-16 Myb/SANT-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013444)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G54390 AT3G54390
fragaria_vesca FvH4_7g03380
malus_domestica MD02G1283400.v1.1 MD07G1048900.v1.1
prunus_persica Prupe.2G039000_v2.0.a1
pyrus_communis pycom02g24150 pycom07g03550
rosa_chinensis RchiOBHm_Chr1g0325721
rosa_laevigata RLG00000030111
rosa_multiflora Rmu_sc0000703.1_g000004
rosa_roxburghii Rroxscaffold_4G00324450
rosa_rugosa Rorug01G0053900
rosa_samantha Rh1AG069600 Rh1BG056900 Rh1CG070100 Rh1DG074700
rosa_wichuraiana Rw1G005750

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 433
AccII CGCG 3 cut(s) 226, 228, 760
AciI CCGC 8 cut(s) 375, 437, 440, 452, 527, 539, 557, 881
AclWI GGATC 4 cut(s) 30, 819, 912, 962
AcoI YGGCCR 1 cut(s) 312
AcsI RAATTY 1 cut(s) 580
AcuI CTGAAG 2 cut(s) 116, 929
AfiI CCNNNNNNNGG 3 cut(s) 80, 196, 566
AflIII ACRYGT 1 cut(s) 214
AgsI TTSAA 1 cut(s) 878
AjiI CACGTC 1 cut(s) 217
AjnI CCWGG 1 cut(s) 18
AluBI AGCT 5 cut(s) 122, 181, 234, 416, 422
AluI AGCT 5 cut(s) 122, 181, 234, 416, 422
Alw26I GTCTC 3 cut(s) 63, 223, 849
AlwI GGATC 4 cut(s) 30, 819, 912, 962
AlwNI CAGNNNCTG 1 cut(s) 404
AoxI GGCC 5 cut(s) 150, 187, 312, 335, 885
ApeKI GCWGC 6 cut(s) 234, 372, 395, 398, 413, 962
ApoI RAATTY 1 cut(s) 580
AspLEI GCGC 3 cut(s) 228, 230, 915
AspS9I GGNCC 3 cut(s) 377, 591, 723
AsuHPI GGTGA 1 cut(s) 420
AvaII GGWCC 3 cut(s) 377, 591, 723
BanI GGYRCC 1 cut(s) 433
BarI GAAGNNNNNNTAC 2 cut(s) 281, 313
BbsI GAAGAC 2 cut(s) 125, 761
BbvI GCAGC 6 cut(s) 221, 384, 407, 410, 425, 949
BccI CCATC 7 cut(s) 40, 317, 514, 590, 617, 795, 895
BceAI ACGGC 1 cut(s) 333
BciT130I CCWGG 1 cut(s) 20
BcoDI GTCTC 3 cut(s) 63, 223, 849
BfaI CTAG 1 cut(s) 129
BfmI CTRYAG 1 cut(s) 417
BisI GCNGC 8 cut(s) 235, 373, 396, 399, 414, 440, 527, 963
BlsI GCNGC 8 cut(s) 236, 374, 397, 400, 415, 441, 528, 964
Bme1390I CCNGG 1 cut(s) 20
Bme18I GGWCC 3 cut(s) 377, 591, 723
BmgBI CACGTC 1 cut(s) 217
BmgT120I GGNCC 3 cut(s) 377, 591, 723
BmiI GGNNCC 4 cut(s) 435, 462, 504, 592
BmrFI CCNGG 1 cut(s) 20
BmrI ACTGGG 2 cut(s) 205, 931
BmsI GCATC 3 cut(s) 483, 601, 662
BmuI ACTGGG 2 cut(s) 205, 931
BpiI GAAGAC 2 cut(s) 125, 761
BplI GAGNNNNNCTC 2 cut(s) 165, 197
BpmI CTGGAG 1 cut(s) 158
BsaJI CCNNGG 3 cut(s) 315, 615, 810
Bsc4I CCNNNNNNNGG 3 cut(s) 80, 196, 566
Bse118I RCCGGY 2 cut(s) 430, 514
Bse1I ACTGG 2 cut(s) 200, 937
BseBI CCWGG 1 cut(s) 20
BseDI CCNNGG 3 cut(s) 315, 615, 810
BseGI GGATG 3 cut(s) 616, 639, 873
BseLI CCNNNNNNNGG 3 cut(s) 80, 196, 566
BseMII CTCAG 2 cut(s) 178, 269
BseNI ACTGG 2 cut(s) 200, 937
BsePI GCGCGC 1 cut(s) 226
BseRI GAGGAG 3 cut(s) 29, 453, 909
BseXI GCAGC 6 cut(s) 221, 384, 407, 410, 425, 949
Bsh1236I CGCG 3 cut(s) 226, 228, 760
BshFI GGCC 5 cut(s) 152, 189, 314, 337, 887
BshNI GGYRCC 1 cut(s) 433
BsiSI CCGG 2 cut(s) 431, 515
BslFI GGGAC 1 cut(s) 229
BslI CCNNNNNNNGG 3 cut(s) 80, 196, 566
BsmAI GTCTC 3 cut(s) 63, 223, 849
BsmBI CGTCTC 1 cut(s) 223
BsmFI GGGAC 1 cut(s) 229
BsnI GGCC 5 cut(s) 152, 189, 314, 337, 887
Bsp143I GATC 6 cut(s) 22, 65, 355, 824, 904, 954
BspACI CCGC 8 cut(s) 375, 437, 440, 452, 527, 539, 557, 881
BspANI GGCC 5 cut(s) 152, 189, 314, 337, 887
BspCNI CTCAG 2 cut(s) 177, 268
BspFNI CGCG 3 cut(s) 226, 228, 760
BspLI GGNNCC 4 cut(s) 435, 462, 504, 592
BspPI GGATC 4 cut(s) 30, 819, 912, 962
BspT107I GGYRCC 1 cut(s) 433
BsrFI RCCGGY 2 cut(s) 430, 514
BsrI ACTGG 2 cut(s) 200, 937
BssAI RCCGGY 2 cut(s) 430, 514
BssECI CCNNGG 3 cut(s) 315, 615, 810
BssHII GCGCGC 1 cut(s) 226
BssMI GATC 6 cut(s) 22, 65, 355, 824, 904, 954
BssT1I CCWWGG 1 cut(s) 615
Bst2UI CCWGG 1 cut(s) 20
Bst4CI ACNGT 3 cut(s) 302, 406, 683
Bst6I CTCTTC 2 cut(s) 92, 731
BstC8I GCNNGC 2 cut(s) 228, 232
BstDEI CTNAG 4 cut(s) 164, 240, 255, 995
BstDSI CCRYGG 1 cut(s) 315
BstEII GGTNACC 1 cut(s) 14
BstF5I GGATG 3 cut(s) 616, 639, 873
BstFNI CGCG 3 cut(s) 226, 228, 760
BstHHI GCGC 3 cut(s) 228, 230, 915
BstKTI GATC 6 cut(s) 25, 68, 358, 827, 907, 957
BstMAI GTCTC 3 cut(s) 63, 223, 849
BstMBI GATC 6 cut(s) 22, 65, 355, 824, 904, 954
BstMWI GCNNNNNNNGC 8 cut(s) 149, 234, 419, 467, 502, 511, 547, 556
BstNI CCWGG 1 cut(s) 20
BstPI GGTNACC 1 cut(s) 14
BstSCI CCNGG 1 cut(s) 18
BstSFI CTRYAG 1 cut(s) 417
BstUI CGCG 3 cut(s) 226, 228, 760
BstV1I GCAGC 6 cut(s) 221, 384, 407, 410, 425, 949
BstV2I GAAGAC 2 cut(s) 125, 761
BstX2I RGATCY 3 cut(s) 824, 904, 954
BstYI RGATCY 3 cut(s) 824, 904, 954
BsuRI GGCC 5 cut(s) 152, 189, 314, 337, 887
BtgI CCRYGG 1 cut(s) 315
BtgZI GCGATG 1 cut(s) 507
BtrI CACGTC 1 cut(s) 217
BtsCI GGATG 3 cut(s) 616, 639, 873
BtsI GCAGTG 1 cut(s) 269
BtsIMutI CAGTG 2 cut(s) 269, 516
Cac8I GCNNGC 2 cut(s) 228, 232
CaiI CAGNNNCTG 1 cut(s) 404
CfoI GCGC 3 cut(s) 228, 230, 915
Cfr10I RCCGGY 2 cut(s) 430, 514
Cfr13I GGNCC 3 cut(s) 377, 591, 723
CseI GACGC 2 cut(s) 268, 766
CviAII CATG 3 cut(s) 191, 286, 650
DdeI CTNAG 4 cut(s) 164, 240, 255, 995
DpnI GATC 6 cut(s) 24, 67, 357, 826, 906, 956
DpnII GATC 6 cut(s) 22, 65, 355, 824, 904, 954
EaeI YGGCCR 1 cut(s) 312
Eam1104I CTCTTC 2 cut(s) 92, 731
EarI CTCTTC 2 cut(s) 92, 731
EciI GGCGGA 1 cut(s) 546
Eco130I CCWWGG 1 cut(s) 615
Eco47I GGWCC 3 cut(s) 377, 591, 723
Eco57I CTGAAG 2 cut(s) 116, 929
Eco91I GGTNACC 1 cut(s) 14
EcoO65I GGTNACC 1 cut(s) 14
EcoRII CCWGG 1 cut(s) 18
EcoT14I CCWWGG 1 cut(s) 615
EcoT22I ATGCAT 1 cut(s) 655
ErhI CCWWGG 1 cut(s) 615
Esp3I CGTCTC 1 cut(s) 223
FaeI CATG 3 cut(s) 194, 289, 653
FaiI YATR 9 cut(s) 147, 192, 287, 477, 586, 651, 702, 797, 860
FaqI GGGAC 1 cut(s) 229
FatI CATG 3 cut(s) 190, 285, 649
Fnu4HI GCNGC 8 cut(s) 235, 373, 396, 399, 414, 440, 527, 963
FokI GGATG 3 cut(s) 623, 646, 880
Fsp4HI GCNGC 8 cut(s) 235, 373, 396, 399, 414, 440, 527, 963
FspBI CTAG 1 cut(s) 129
GlaI GCGC 3 cut(s) 227, 229, 914
GluI GCNGC 8 cut(s) 235, 373, 396, 399, 414, 440, 527, 963
GsuI CTGGAG 1 cut(s) 158
HaeIII GGCC 5 cut(s) 152, 189, 314, 337, 887
HapII CCGG 2 cut(s) 431, 515
HgaI GACGC 2 cut(s) 268, 766
HhaI GCGC 3 cut(s) 228, 230, 915
Hin1II CATG 3 cut(s) 194, 289, 653
Hin6I GCGC 3 cut(s) 226, 228, 913
HinP1I GCGC 3 cut(s) 226, 228, 913
HinfI GANTC 5 cut(s) 56, 253, 281, 308, 986
HpaII CCGG 2 cut(s) 431, 515
HphI GGTGA 1 cut(s) 420
Hpy188I TCNGA 9 cut(s) 167, 258, 307, 492, 595, 646, 658, 829, 909
Hpy188III TCNNGA 3 cut(s) 137, 748, 837
Hpy99I CGWCG 1 cut(s) 226
HpyAV CCTTC 2 cut(s) 110, 762
HpyCH4III ACNGT 3 cut(s) 302, 406, 683
HpyCH4IV ACGT 1 cut(s) 216
HpyCH4V TGCA 3 cut(s) 267, 653, 950
HpyF10VI GCNNNNNNNGC 8 cut(s) 149, 234, 419, 467, 502, 511, 547, 556
HpyF3I CTNAG 4 cut(s) 164, 240, 255, 995
HpySE526I ACGT 1 cut(s) 216
Hsp92II CATG 3 cut(s) 194, 289, 653
HspAI GCGC 3 cut(s) 226, 228, 913
Kzo9I GATC 6 cut(s) 22, 65, 355, 824, 904, 954
LmnI GCTCC 3 cut(s) 119, 466, 502
Lsp1109I GCAGC 6 cut(s) 221, 384, 407, 410, 425, 949
LweI GCATC 3 cut(s) 483, 601, 662
MaeI CTAG 1 cut(s) 129
MaeII ACGT 1 cut(s) 216
MaeIII GTNAC 2 cut(s) 14, 86
MalI GATC 6 cut(s) 24, 67, 357, 826, 906, 956
MboI GATC 6 cut(s) 22, 65, 355, 824, 904, 954
MflI RGATCY 3 cut(s) 824, 904, 954
MluCI AATT 6 cut(s) 49, 580, 638, 776, 921, 999
MlyI GAGTC 4 cut(s) 65, 247, 290, 317
MmeI TCCRAC 1 cut(s) 921
Mph1103I ATGCAT 1 cut(s) 655
MseI TTAA 1 cut(s) 719
MspA1I CMGCKG 3 cut(s) 234, 375, 416
MspI CCGG 2 cut(s) 431, 515
MspR9I CCNGG 1 cut(s) 20
MvaI CCWGG 1 cut(s) 20
MvnI CGCG 3 cut(s) 226, 228, 760
MwoI GCNNNNNNNGC 8 cut(s) 149, 234, 419, 467, 502, 511, 547, 556
NdeII GATC 6 cut(s) 22, 65, 355, 824, 904, 954
NlaIII CATG 3 cut(s) 194, 289, 653
NlaIV GGNNCC 4 cut(s) 435, 462, 504, 592
NmeAIII GCCGAG 2 cut(s) 814, 835
NmuCI GTSAC 1 cut(s) 86
NsiI ATGCAT 1 cut(s) 655
PauI GCGCGC 1 cut(s) 226
PfeI GAWTC 1 cut(s) 986
PkrI GCNGC 8 cut(s) 236, 374, 397, 400, 415, 441, 528, 964
PleI GAGTC 4 cut(s) 64, 247, 289, 316
PpsI GAGTC 4 cut(s) 64, 247, 289, 316
Psp6I CCWGG 1 cut(s) 18
PspEI GGTNACC 1 cut(s) 14
PspGI CCWGG 1 cut(s) 18
PspN4I GGNNCC 4 cut(s) 435, 462, 504, 592
PspPI GGNCC 3 cut(s) 377, 591, 723
PstNI CAGNNNCTG 1 cut(s) 404
PsuI RGATCY 3 cut(s) 824, 904, 954
PteI GCGCGC 1 cut(s) 226
PvuII CAGCTG 2 cut(s) 234, 416
SaqAI TTAA 1 cut(s) 719
SatI GCNGC 8 cut(s) 235, 373, 396, 399, 414, 440, 527, 963
Sau3AI GATC 6 cut(s) 22, 65, 355, 824, 904, 954
Sau96I GGNCC 3 cut(s) 377, 591, 723
SchI GAGTC 4 cut(s) 65, 247, 290, 317
ScrFI CCNGG 1 cut(s) 20
SfaNI GCATC 3 cut(s) 483, 601, 662
SfcI CTRYAG 1 cut(s) 417
SinI GGWCC 3 cut(s) 377, 591, 723
Sse9I AATT 6 cut(s) 49, 580, 638, 776, 921, 999
SsiI CCGC 8 cut(s) 375, 437, 440, 452, 527, 539, 557, 881
SspMI CTAG 1 cut(s) 129
StyD4I CCNGG 1 cut(s) 18
StyI CCWWGG 1 cut(s) 615
TaaI ACNGT 3 cut(s) 302, 406, 683
TaiI ACGT 1 cut(s) 219
TaqI TCGA 1 cut(s) 747
TasI AATT 6 cut(s) 49, 580, 638, 776, 921, 999
TauI GCSGC 2 cut(s) 442, 529
TfiI GAWTC 1 cut(s) 986
Tru1I TTAA 1 cut(s) 719
Tru9I TTAA 1 cut(s) 719
TscAI CASTG 2 cut(s) 269, 516
TseFI GTSAC 1 cut(s) 86
TseI GCWGC 6 cut(s) 234, 372, 395, 398, 413, 962
Tsp45I GTSAC 1 cut(s) 86
TspDTI ATGAA 4 cut(s) 302, 573, 650, 749
TspRI CASTG 2 cut(s) 269, 516
VpaK11BI GGWCC 3 cut(s) 377, 591, 723
XapI RAATTY 1 cut(s) 580
XcmI CCANNNNNNNNNTGG 1 cut(s) 937
XspI CTAG 1 cut(s) 129
Zsp2I ATGCAT 1 cut(s) 655
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.