Rh1CG070100
MYB Family

Myb/SANT-like DNA-binding domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1C
OG0013444
Physical Location & Seq
Forward (+)
14526295 .. 14529616
3322 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1CG070100.1

Sequence Viewer

Length: 1017 bp
ATGGAGAAAGAGGGTAACCAGGATCAAAACCCATCTCTCCTCTCTAACAATTTGGAGTCTCCAAGATCAAAACCCTTGATTGGTAGTGACAGGCTGAAGAGAGATGAGTGGAGTGAAGGAGCTGTGTCTAGTCTTCTGGAGGCTTATGAGGCCAAATGGGTTCTCAGAAACAGAGCCAAGCTCAAAGGCCATGACTGGGAAGATGTAGCCAGACACGTCTCGTCGCGTGCCAGCTGCTCCAAGTCCCCCAAGACTCAGACGCAGTGCAAGAACAAGATTGAGTCCATGAAGAAACGCTACCGTTCCGAGTCGGCCACGGCTGATGGCTCATCTTGGCCTCTCTATCCAAGACTTGATCTTTTGTTGCGTGGCAGCGGACCACCTCCACCCACAGCAGCAGCAGCAACTGTTGTAGCAGCTGTAGCTACTTCACCGGCACCGCCGCAACAACCACCGCTATCGGTTCCTCTGGCTCATCATAGCAACCACGCTCTGATACTATTGGAGCCATCAGTGCCGGTGTCATCGCCGCCTCAACCACCGCCTCCACAGCCACCTCCGCCACATTTAGGAACTGCCCAAAATTCATACGGGTCCGATGGTGTTGATAGGGATGCCAAGGAAGATGGAGTGGGGATGAAATTATCAGACCATGCATCAGACAAGAACCCATTGGAGATAGACAGTAGCACACCAGCCCTTTATAGTGATAAGGAAAAGTTAAGGTCCAAGAGAATGAAGAGGAAAATCGAGAAGAAGACGCGAAGAAGAAGGGAGGAATTAGAGATAGCCGAGAGCATAAGATGGTTAGCCGAGGTTGTGGTAAGATCCGAGCAATCACGAATGGACACAATGAGAGACATAGAGAGGATGAGAGTTGAAGCGGAGGCCAAGAGAGGAGAGATGGATCTGAAGCGCACAGAAATTATTGCCAATACCCAGTTGGAGATTGCAAGGATCTTTGCTGCTGGTGTTGGCAAAGGTGTTGATTCTTCACTAAGAATTGGAAGAAGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-bind_4

Protein Analysis

338

Amino Acids

37.4

Weight (kDa)

9.44

Isoelectric Point (pI)

65.28

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-bind_4 PF13837 34 - 120 2.9e-16 Myb/SANT-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013444)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G54390 AT3G54390
fragaria_vesca FvH4_7g03380
malus_domestica MD02G1283400.v1.1 MD07G1048900.v1.1
prunus_persica Prupe.2G039000_v2.0.a1
pyrus_communis pycom02g24150 pycom07g03550
rosa_chinensis RchiOBHm_Chr1g0325721
rosa_laevigata RLG00000030111
rosa_multiflora Rmu_sc0000703.1_g000004
rosa_roxburghii Rroxscaffold_4G00324450
rosa_rugosa Rorug01G0053900
rosa_samantha Rh1AG069600 Rh1BG056900 Rh1CG070100 Rh1DG074700
rosa_wichuraiana Rw1G005750

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 436
AccII CGCG 2 cut(s) 226, 763
AciI CCGC 8 cut(s) 375, 440, 443, 455, 530, 542, 560, 884
AclWI GGATC 4 cut(s) 30, 822, 915, 965
AcoI YGGCCR 1 cut(s) 312
AcsI RAATTY 1 cut(s) 583
AcuI CTGAAG 2 cut(s) 116, 932
AfiI CCNNNNNNNGG 3 cut(s) 80, 196, 569
AflIII ACRYGT 1 cut(s) 214
AgsI TTSAA 1 cut(s) 881
AjiI CACGTC 1 cut(s) 217
AjnI CCWGG 1 cut(s) 18
AluBI AGCT 5 cut(s) 122, 181, 234, 419, 425
AluI AGCT 5 cut(s) 122, 181, 234, 419, 425
Alw26I GTCTC 3 cut(s) 63, 223, 852
AlwI GGATC 4 cut(s) 30, 822, 915, 965
AlwNI CAGNNNCTG 1 cut(s) 407
AoxI GGCC 5 cut(s) 150, 187, 312, 335, 888
ApeKI GCWGC 7 cut(s) 234, 372, 395, 398, 401, 416, 965
ApoI RAATTY 1 cut(s) 583
AspLEI GCGC 1 cut(s) 918
AspS9I GGNCC 3 cut(s) 377, 594, 726
AsuHPI GGTGA 1 cut(s) 423
AvaII GGWCC 3 cut(s) 377, 594, 726
BanI GGYRCC 1 cut(s) 436
BarI GAAGNNNNNNTAC 2 cut(s) 281, 313
BbsI GAAGAC 2 cut(s) 125, 764
BbvI GCAGC 7 cut(s) 221, 384, 407, 410, 413, 428, 952
BccI CCATC 7 cut(s) 40, 317, 517, 593, 620, 798, 898
BceAI ACGGC 1 cut(s) 333
BciT130I CCWGG 1 cut(s) 20
BcoDI GTCTC 3 cut(s) 63, 223, 852
BfaI CTAG 1 cut(s) 129
BfmI CTRYAG 1 cut(s) 420
BisI GCNGC 9 cut(s) 235, 373, 396, 399, 402, 417, 443, 530, 966
BlsI GCNGC 9 cut(s) 236, 374, 397, 400, 403, 418, 444, 531, 967
Bme1390I CCNGG 1 cut(s) 20
Bme18I GGWCC 3 cut(s) 377, 594, 726
BmgBI CACGTC 1 cut(s) 217
BmgT120I GGNCC 3 cut(s) 377, 594, 726
BmiI GGNNCC 4 cut(s) 438, 465, 507, 595
BmrFI CCNGG 1 cut(s) 20
BmrI ACTGGG 2 cut(s) 205, 934
BmsI GCATC 2 cut(s) 604, 665
BmuI ACTGGG 2 cut(s) 205, 934
BpiI GAAGAC 2 cut(s) 125, 764
BplI GAGNNNNNCTC 2 cut(s) 165, 197
BpmI CTGGAG 1 cut(s) 158
BsaJI CCNNGG 3 cut(s) 315, 618, 813
Bsc4I CCNNNNNNNGG 3 cut(s) 80, 196, 569
Bse118I RCCGGY 2 cut(s) 433, 517
Bse1I ACTGG 2 cut(s) 200, 940
BseBI CCWGG 1 cut(s) 20
BseDI CCNNGG 3 cut(s) 315, 618, 813
BseGI GGATG 3 cut(s) 619, 642, 876
BseLI CCNNNNNNNGG 3 cut(s) 80, 196, 569
BseMII CTCAG 2 cut(s) 178, 269
BseNI ACTGG 2 cut(s) 200, 940
BseRI GAGGAG 2 cut(s) 29, 912
BseXI GCAGC 7 cut(s) 221, 384, 407, 410, 413, 428, 952
Bsh1236I CGCG 2 cut(s) 226, 763
BshFI GGCC 5 cut(s) 152, 189, 314, 337, 890
BshNI GGYRCC 1 cut(s) 436
BsiSI CCGG 2 cut(s) 434, 518
BslFI GGGAC 1 cut(s) 229
BslI CCNNNNNNNGG 3 cut(s) 80, 196, 569
BsmAI GTCTC 3 cut(s) 63, 223, 852
BsmBI CGTCTC 1 cut(s) 223
BsmFI GGGAC 1 cut(s) 229
BsnI GGCC 5 cut(s) 152, 189, 314, 337, 890
Bsp143I GATC 6 cut(s) 22, 65, 355, 827, 907, 957
BspACI CCGC 8 cut(s) 375, 440, 443, 455, 530, 542, 560, 884
BspANI GGCC 5 cut(s) 152, 189, 314, 337, 890
BspCNI CTCAG 2 cut(s) 177, 268
BspFNI CGCG 2 cut(s) 226, 763
BspLI GGNNCC 4 cut(s) 438, 465, 507, 595
BspPI GGATC 4 cut(s) 30, 822, 915, 965
BspT107I GGYRCC 1 cut(s) 436
BsrFI RCCGGY 2 cut(s) 433, 517
BsrI ACTGG 2 cut(s) 200, 940
BssAI RCCGGY 2 cut(s) 433, 517
BssECI CCNNGG 3 cut(s) 315, 618, 813
BssMI GATC 6 cut(s) 22, 65, 355, 827, 907, 957
BssT1I CCWWGG 1 cut(s) 618
Bst2UI CCWGG 1 cut(s) 20
Bst4CI ACNGT 3 cut(s) 302, 409, 686
Bst6I CTCTTC 2 cut(s) 92, 734
BstC8I GCNNGC 2 cut(s) 228, 232
BstDEI CTNAG 3 cut(s) 164, 255, 998
BstDSI CCRYGG 1 cut(s) 315
BstEII GGTNACC 1 cut(s) 14
BstF5I GGATG 3 cut(s) 619, 642, 876
BstFNI CGCG 2 cut(s) 226, 763
BstHHI GCGC 1 cut(s) 918
BstKTI GATC 6 cut(s) 25, 68, 358, 830, 910, 960
BstMAI GTCTC 3 cut(s) 63, 223, 852
BstMBI GATC 6 cut(s) 22, 65, 355, 827, 907, 957
BstMWI GCNNNNNNNGC 6 cut(s) 149, 401, 422, 514, 550, 559
BstNI CCWGG 1 cut(s) 20
BstPI GGTNACC 1 cut(s) 14
BstSCI CCNGG 1 cut(s) 18
BstSFI CTRYAG 1 cut(s) 420
BstUI CGCG 2 cut(s) 226, 763
BstV1I GCAGC 7 cut(s) 221, 384, 407, 410, 413, 428, 952
BstV2I GAAGAC 2 cut(s) 125, 764
BstX2I RGATCY 3 cut(s) 827, 907, 957
BstYI RGATCY 3 cut(s) 827, 907, 957
BsuRI GGCC 5 cut(s) 152, 189, 314, 337, 890
BtgI CCRYGG 1 cut(s) 315
BtgZI GCGATG 1 cut(s) 510
BtrI CACGTC 1 cut(s) 217
BtsCI GGATG 3 cut(s) 619, 642, 876
BtsI GCAGTG 1 cut(s) 269
BtsIMutI CAGTG 2 cut(s) 269, 519
Cac8I GCNNGC 2 cut(s) 228, 232
CaiI CAGNNNCTG 1 cut(s) 407
CfoI GCGC 1 cut(s) 918
Cfr10I RCCGGY 2 cut(s) 433, 517
Cfr13I GGNCC 3 cut(s) 377, 594, 726
CseI GACGC 2 cut(s) 268, 769
CviAII CATG 3 cut(s) 191, 286, 653
DdeI CTNAG 3 cut(s) 164, 255, 998
DpnI GATC 6 cut(s) 24, 67, 357, 829, 909, 959
DpnII GATC 6 cut(s) 22, 65, 355, 827, 907, 957
EaeI YGGCCR 1 cut(s) 312
Eam1104I CTCTTC 2 cut(s) 92, 734
EarI CTCTTC 2 cut(s) 92, 734
EciI GGCGGA 1 cut(s) 549
Eco130I CCWWGG 1 cut(s) 618
Eco47I GGWCC 3 cut(s) 377, 594, 726
Eco57I CTGAAG 2 cut(s) 116, 932
Eco91I GGTNACC 1 cut(s) 14
EcoO65I GGTNACC 1 cut(s) 14
EcoRII CCWGG 1 cut(s) 18
EcoT14I CCWWGG 1 cut(s) 618
EcoT22I ATGCAT 1 cut(s) 658
ErhI CCWWGG 1 cut(s) 618
Esp3I CGTCTC 1 cut(s) 223
FaeI CATG 3 cut(s) 194, 289, 656
FaiI YATR 9 cut(s) 147, 192, 287, 480, 589, 654, 705, 800, 863
FaqI GGGAC 1 cut(s) 229
FatI CATG 3 cut(s) 190, 285, 652
Fnu4HI GCNGC 9 cut(s) 235, 373, 396, 399, 402, 417, 443, 530, 966
FokI GGATG 3 cut(s) 626, 649, 883
Fsp4HI GCNGC 9 cut(s) 235, 373, 396, 399, 402, 417, 443, 530, 966
FspBI CTAG 1 cut(s) 129
GlaI GCGC 1 cut(s) 917
GluI GCNGC 9 cut(s) 235, 373, 396, 399, 402, 417, 443, 530, 966
GsuI CTGGAG 1 cut(s) 158
HaeIII GGCC 5 cut(s) 152, 189, 314, 337, 890
HapII CCGG 2 cut(s) 434, 518
HgaI GACGC 2 cut(s) 268, 769
HhaI GCGC 1 cut(s) 918
Hin1II CATG 3 cut(s) 194, 289, 656
Hin6I GCGC 1 cut(s) 916
HinP1I GCGC 1 cut(s) 916
HinfI GANTC 5 cut(s) 56, 253, 281, 308, 989
HpaII CCGG 2 cut(s) 434, 518
HphI GGTGA 1 cut(s) 423
Hpy188I TCNGA 9 cut(s) 167, 258, 307, 495, 598, 649, 661, 832, 912
Hpy188III TCNNGA 3 cut(s) 137, 751, 840
Hpy99I CGWCG 1 cut(s) 226
HpyAV CCTTC 2 cut(s) 110, 765
HpyCH4III ACNGT 3 cut(s) 302, 409, 686
HpyCH4IV ACGT 1 cut(s) 216
HpyCH4V TGCA 3 cut(s) 267, 656, 953
HpyF10VI GCNNNNNNNGC 6 cut(s) 149, 401, 422, 514, 550, 559
HpyF3I CTNAG 3 cut(s) 164, 255, 998
HpySE526I ACGT 1 cut(s) 216
Hsp92II CATG 3 cut(s) 194, 289, 656
HspAI GCGC 1 cut(s) 916
Kzo9I GATC 6 cut(s) 22, 65, 355, 827, 907, 957
LmnI GCTCC 3 cut(s) 119, 242, 505
Lsp1109I GCAGC 7 cut(s) 221, 384, 407, 410, 413, 428, 952
LweI GCATC 2 cut(s) 604, 665
MaeI CTAG 1 cut(s) 129
MaeII ACGT 1 cut(s) 216
MaeIII GTNAC 2 cut(s) 14, 86
MalI GATC 6 cut(s) 24, 67, 357, 829, 909, 959
MboI GATC 6 cut(s) 22, 65, 355, 827, 907, 957
MflI RGATCY 3 cut(s) 827, 907, 957
MluCI AATT 6 cut(s) 49, 583, 641, 779, 924, 1002
MlyI GAGTC 4 cut(s) 65, 247, 290, 317
MmeI TCCRAC 1 cut(s) 924
Mph1103I ATGCAT 1 cut(s) 658
MseI TTAA 1 cut(s) 722
MspA1I CMGCKG 3 cut(s) 234, 375, 419
MspI CCGG 2 cut(s) 434, 518
MspR9I CCNGG 1 cut(s) 20
MvaI CCWGG 1 cut(s) 20
MvnI CGCG 2 cut(s) 226, 763
MwoI GCNNNNNNNGC 6 cut(s) 149, 401, 422, 514, 550, 559
NdeII GATC 6 cut(s) 22, 65, 355, 827, 907, 957
NlaIII CATG 3 cut(s) 194, 289, 656
NlaIV GGNNCC 4 cut(s) 438, 465, 507, 595
NmeAIII GCCGAG 2 cut(s) 817, 838
NmuCI GTSAC 1 cut(s) 86
NsiI ATGCAT 1 cut(s) 658
PfeI GAWTC 1 cut(s) 989
PkrI GCNGC 9 cut(s) 236, 374, 397, 400, 403, 418, 444, 531, 967
PleI GAGTC 4 cut(s) 64, 247, 289, 316
PpsI GAGTC 4 cut(s) 64, 247, 289, 316
Psp6I CCWGG 1 cut(s) 18
PspEI GGTNACC 1 cut(s) 14
PspGI CCWGG 1 cut(s) 18
PspN4I GGNNCC 4 cut(s) 438, 465, 507, 595
PspPI GGNCC 3 cut(s) 377, 594, 726
PstNI CAGNNNCTG 1 cut(s) 407
PsuI RGATCY 3 cut(s) 827, 907, 957
PvuII CAGCTG 2 cut(s) 234, 419
SaqAI TTAA 1 cut(s) 722
SatI GCNGC 9 cut(s) 235, 373, 396, 399, 402, 417, 443, 530, 966
Sau3AI GATC 6 cut(s) 22, 65, 355, 827, 907, 957
Sau96I GGNCC 3 cut(s) 377, 594, 726
SchI GAGTC 4 cut(s) 65, 247, 290, 317
ScrFI CCNGG 1 cut(s) 20
SfaNI GCATC 2 cut(s) 604, 665
SfcI CTRYAG 1 cut(s) 420
SinI GGWCC 3 cut(s) 377, 594, 726
Sse9I AATT 6 cut(s) 49, 583, 641, 779, 924, 1002
SsiI CCGC 8 cut(s) 375, 440, 443, 455, 530, 542, 560, 884
SspMI CTAG 1 cut(s) 129
StyD4I CCNGG 1 cut(s) 18
StyI CCWWGG 1 cut(s) 618
TaaI ACNGT 3 cut(s) 302, 409, 686
TaiI ACGT 1 cut(s) 219
TaqI TCGA 1 cut(s) 750
TasI AATT 6 cut(s) 49, 583, 641, 779, 924, 1002
TauI GCSGC 2 cut(s) 445, 532
TfiI GAWTC 1 cut(s) 989
Tru1I TTAA 1 cut(s) 722
Tru9I TTAA 1 cut(s) 722
TscAI CASTG 2 cut(s) 269, 519
TseFI GTSAC 1 cut(s) 86
TseI GCWGC 7 cut(s) 234, 372, 395, 398, 401, 416, 965
Tsp45I GTSAC 1 cut(s) 86
TspDTI ATGAA 4 cut(s) 302, 576, 653, 752
TspRI CASTG 2 cut(s) 269, 519
VpaK11BI GGWCC 3 cut(s) 377, 594, 726
XapI RAATTY 1 cut(s) 583
XcmI CCANNNNNNNNNTGG 1 cut(s) 940
XspI CTAG 1 cut(s) 129
Zsp2I ATGCAT 1 cut(s) 658
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.