MD02G1283400.v1.1
MYB Family

Myb/SANT-like DNA-binding domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr02
OG0013444
Physical Location & Seq
Reverse (-)
33988588 .. 33990880
2293 bp
Loading structure...
UTR
Exon/CDS
Intron
MD02G1283400.v1.1.491

Sequence Viewer

Length: 1059 bp
ATGGACAGTGAAACAAACCAAGAAAACCCATCCCTCCCCCCAAACAATTATACCACCACAACCACCAAGGAATTAGAGTCTCCTCCGAGATCAAAACCTCCCCAACAGCCTCCTCTCGGCGGGAGCGGCGGTGACAGACTCAAAAGAGATGAGTGGAGTGAAGGAGCAGTTTCTAGCCTACTTGAAGCTTATGAGACCAAATGGGTTCTCAGAAACAGAGCAAAGCTTAAAGGCCATGACTGGGAAGATGTGGCAAGACACGTGTCGTCACGTGCCAACTGTACCAAGTCCCCAAAGACGCAAACTCAGTGCAAGAACAAGATTGAGTCCATGAAGAAACGGTATCGTTCTGAGTCCGCCGCTGGTGATGGTTCTTCTTGGCCTCTGTATCCTAGGCTTGATCTTTTGTTACGTGGCAGTGGGACGTCCCCAACCGCGGCGGCAGCAGCTGCTGCTGCTGTTGCTGCAACTGTACCGCCCCCGCCACTGCCACCACTACAGCTGCTTCATACACTGCCTCAGAACGATCATCCCTTGATGCTATTGGAGCCTTCAGCACCGCCGCCACTACCGCCGCCACCACAACCTCCTGCTCCTCCGCCACTTATGGGGACTGCCCAGAATTCATTTGGATCCAATGGTGCTGATCATAGGGTGGCCAAGGAAGATGCAGTGGGGATGAAATTGTCAGACCATGCATCGGACAAGAACCCTTTGGAGGTAGACAGTAGCACACCAGCTCTCTACAGTGACAAGGAACAATTAAGGTCCAAAAGAATGAAGAGGAAAATGGAGAAAAAGAAGCGGCGAAGGCGGGAGGAAGTAGACGTAGCTGAGAGCATAAGATGGCTAGCAGAAGTTGTGGTAAGATCAGAACAAGCAAGAATGGACTCAATGAGGGAGATAGAGAGGATGAGAGTCGAGGCAGAGGCGAAGCGAGGAGAAATGGATCTCAAGCGTACCGAAATCATTGCGAACACGCAGTTGGAGATTGCAAGGTTGTTTGCAGCTGGTGGTGGCAAGGGGGTTGATTCTTCATTGAGAATTGGAAGAAGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-bind_4

Protein Analysis

353

Amino Acids

38.76

Weight (kDa)

9.44

Isoelectric Point (pI)

66.5

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-bind_4 PF13837 49 - 135 9.3e-17 Myb/SANT-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013444)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G54390 AT3G54390
fragaria_vesca FvH4_7g03380
malus_domestica MD02G1283400.v1.1 MD07G1048900.v1.1
prunus_persica Prupe.2G039000_v2.0.a1
pyrus_communis pycom02g24150 pycom07g03550
rosa_chinensis RchiOBHm_Chr1g0325721
rosa_laevigata RLG00000030111
rosa_multiflora Rmu_sc0000703.1_g000004
rosa_roxburghii Rroxscaffold_4G00324450
rosa_rugosa Rorug01G0053900
rosa_samantha Rh1AG069600 Rh1BG056900 Rh1CG070100 Rh1DG074700
rosa_wichuraiana Rw1G005750

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 428
AccBSI CCGCTC 1 cut(s) 126
AccI GTMKAC 2 cut(s) 723, 825
AccII CGCG 1 cut(s) 437
AclWI GGATC 3 cut(s) 627, 640, 957
AcoI YGGCCR 1 cut(s) 657
AcsI RAATTY 1 cut(s) 622
AcuI CTGAAG 1 cut(s) 537
AcvI CACGTG 2 cut(s) 262, 272
AcyI GRCGYC 1 cut(s) 425
AfaI GTAC 3 cut(s) 283, 474, 961
AfiI CCNNNNNNNGG 7 cut(s) 116, 119, 241, 436, 608, 700, 718
AflIII ACRYGT 2 cut(s) 259, 261
AgsI TTSAA 1 cut(s) 185
AjuI GAANNNNNNNTTGG 2 cut(s) 968, 1000
AluBI AGCT 7 cut(s) 188, 226, 449, 502, 740, 833, 1010
AluI AGCT 7 cut(s) 188, 226, 449, 502, 740, 833, 1010
Alw26I GTCTC 2 cut(s) 84, 188
AlwI GGATC 3 cut(s) 627, 640, 957
AlwNI CAGNNNCTG 2 cut(s) 449, 452
AoxI GGCC 3 cut(s) 232, 380, 657
ApeKI GCWGC 8 cut(s) 443, 446, 449, 452, 455, 464, 502, 1007
ApoI RAATTY 1 cut(s) 622
AspA2I CCTAGG 1 cut(s) 392
AspS9I GGNCC 1 cut(s) 768
AsuHPI GGTGA 2 cut(s) 143, 377
AsuNHI GCTAGC 1 cut(s) 850
AvaII GGWCC 1 cut(s) 768
AvrII CCTAGG 1 cut(s) 392
BalI TGGCCA 1 cut(s) 659
BamHI GGATCC 1 cut(s) 632
BbrPI CACGTG 2 cut(s) 262, 272
BbvI GCAGC 8 cut(s) 436, 439, 442, 451, 455, 458, 489, 1019
BccI CCATC 3 cut(s) 37, 362, 840
BcgI CGANNNNNNTGC 2 cut(s) 953, 987
BciVI GTATCC 1 cut(s) 399
BclI TGATCA 1 cut(s) 646
BcoDI GTCTC 2 cut(s) 84, 188
BfaI CTAG 3 cut(s) 174, 393, 851
BfmI CTRYAG 2 cut(s) 497, 745
BfuI GTATCC 1 cut(s) 399
BlnI CCTAGG 1 cut(s) 392
Bme18I GGWCC 1 cut(s) 768
BmgT120I GGNCC 1 cut(s) 768
BmiI GGNNCC 2 cut(s) 549, 634
BmrI ACTGGG 1 cut(s) 250
BmsI GCATC 3 cut(s) 528, 658, 707
BmtI GCTAGC 1 cut(s) 854
BmuI ACTGGG 1 cut(s) 250
BoxI GACNNNNGTC 1 cut(s) 262
BpuEI CTTGAG 1 cut(s) 938
BsaAI YACGTR 3 cut(s) 262, 272, 413
BsaHI GRCGYC 1 cut(s) 425
BsaI GGTCTC 1 cut(s) 188
BsaJI CCNNGG 4 cut(s) 66, 392, 435, 660
BsaXI ACNNNNNCTCC 2 cut(s) 115, 145
Bsc4I CCNNNNNNNGG 7 cut(s) 116, 119, 241, 436, 608, 700, 718
Bse1I ACTGG 1 cut(s) 245
Bse3DI GCAATG 1 cut(s) 969
BseDI CCNNGG 4 cut(s) 66, 392, 435, 660
BseGI GGATG 4 cut(s) 29, 529, 684, 918
BseLI CCNNNNNNNGG 7 cut(s) 116, 119, 241, 436, 608, 700, 718
BseMI GCAATG 1 cut(s) 969
BseMII CTCAG 5 cut(s) 223, 320, 342, 533, 825
BseNI ACTGG 1 cut(s) 245
BseRI GAGGAG 4 cut(s) 72, 102, 585, 954
BseXI GCAGC 8 cut(s) 436, 439, 442, 451, 455, 458, 489, 1019
Bsh1236I CGCG 1 cut(s) 437
BshFI GGCC 3 cut(s) 234, 382, 659
BslFI GGGAC 4 cut(s) 274, 412, 436, 625
BslI CCNNNNNNNGG 7 cut(s) 116, 119, 241, 436, 608, 700, 718
BsmAI GTCTC 2 cut(s) 84, 188
BsmFI GGGAC 4 cut(s) 274, 412, 436, 625
BsnI GGCC 3 cut(s) 234, 382, 659
Bso31I GGTCTC 1 cut(s) 188
Bsp143I GATC 7 cut(s) 89, 400, 526, 632, 646, 869, 949
BspANI GGCC 3 cut(s) 234, 382, 659
BspCNI CTCAG 5 cut(s) 222, 319, 343, 532, 826
BspFNI CGCG 1 cut(s) 437
BspLI GGNNCC 2 cut(s) 549, 634
BspOI GCTAGC 1 cut(s) 854
BspPI GGATC 3 cut(s) 627, 640, 957
BspTNI GGTCTC 1 cut(s) 188
BsrBI CCGCTC 1 cut(s) 126
BsrDI GCAATG 1 cut(s) 969
BsrI ACTGG 1 cut(s) 245
BssECI CCNNGG 4 cut(s) 66, 392, 435, 660
BssMI GATC 7 cut(s) 89, 400, 526, 632, 646, 869, 949
BssNI GRCGYC 1 cut(s) 425
BssT1I CCWWGG 3 cut(s) 66, 392, 660
Bst4CI ACNGT 6 cut(s) 8, 281, 342, 472, 728, 749
Bst6I CTCTTC 1 cut(s) 776
BstACI GRCGYC 1 cut(s) 425
BstAPI GCANNNNNTGC 2 cut(s) 449, 452
BstBAI YACGTR 3 cut(s) 262, 272, 413
BstC8I GCNNGC 1 cut(s) 852
BstDEI CTNAG 5 cut(s) 209, 306, 351, 519, 834
BstDSI CCRYGG 1 cut(s) 435
BstF5I GGATG 4 cut(s) 29, 529, 684, 918
BstFNI CGCG 1 cut(s) 437
BstKTI GATC 7 cut(s) 92, 403, 529, 635, 649, 872, 952
BstMAI GTCTC 2 cut(s) 84, 188
BstMBI GATC 7 cut(s) 89, 400, 526, 632, 646, 869, 949
BstPAI GACNNNNGTC 1 cut(s) 262
BstSFI CTRYAG 2 cut(s) 497, 745
BstUI CGCG 1 cut(s) 437
BstV1I GCAGC 8 cut(s) 436, 439, 442, 451, 455, 458, 489, 1019
BstX2I RGATCY 2 cut(s) 632, 949
BstYI RGATCY 2 cut(s) 632, 949
BsuI GTATCC 1 cut(s) 399
BsuRI GGCC 3 cut(s) 234, 382, 659
BtgI CCRYGG 1 cut(s) 435
BtsCI GGATG 4 cut(s) 29, 529, 684, 918
BtsI GCAGTG 4 cut(s) 424, 485, 512, 678
BtsIMutI CAGTG 7 cut(s) 13, 314, 424, 485, 512, 678, 754
Cac8I GCNNGC 1 cut(s) 852
CaiI CAGNNNCTG 2 cut(s) 449, 452
Cfr13I GGNCC 1 cut(s) 768
Cfr42I CCGCGG 1 cut(s) 438
CseI GACGC 1 cut(s) 307
Csp6I GTAC 3 cut(s) 282, 473, 960
CviAII CATG 3 cut(s) 236, 331, 695
CviQI GTAC 3 cut(s) 282, 473, 960
DdeI CTNAG 5 cut(s) 209, 306, 351, 519, 834
DpnI GATC 7 cut(s) 91, 402, 528, 634, 648, 871, 951
DpnII GATC 7 cut(s) 89, 400, 526, 632, 646, 869, 949
EaeI YGGCCR 1 cut(s) 657
Eam1104I CTCTTC 1 cut(s) 776
EarI CTCTTC 1 cut(s) 776
EciI GGCGGA 2 cut(s) 346, 588
Eco130I CCWWGG 3 cut(s) 66, 392, 660
Eco31I GGTCTC 1 cut(s) 188
Eco47I GGWCC 1 cut(s) 768
Eco57I CTGAAG 1 cut(s) 537
Eco72I CACGTG 2 cut(s) 262, 272
EcoRI GAATTC 1 cut(s) 622
EcoT14I CCWWGG 3 cut(s) 66, 392, 660
EcoT22I ATGCAT 1 cut(s) 700
ErhI CCWWGG 3 cut(s) 66, 392, 660
FaeI CATG 3 cut(s) 239, 334, 698
FaiI YATR 9 cut(s) 51, 192, 237, 332, 510, 608, 651, 696, 842
FaqI GGGAC 4 cut(s) 274, 412, 436, 625
FatI CATG 3 cut(s) 235, 330, 694
FauI CCCGC 3 cut(s) 113, 489, 807
FbaI TGATCA 1 cut(s) 646
FblI GTMKAC 2 cut(s) 723, 825
FokI GGATG 4 cut(s) 16, 516, 691, 925
FspBI CTAG 3 cut(s) 174, 393, 851
HaeIII GGCC 3 cut(s) 234, 382, 659
HgaI GACGC 1 cut(s) 307
Hin1I GRCGYC 1 cut(s) 425
Hin1II CATG 3 cut(s) 239, 334, 698
HindIII AAGCTT 2 cut(s) 186, 224
HinfI GANTC 7 cut(s) 77, 138, 326, 353, 890, 918, 1031
HphI GGTGA 2 cut(s) 143, 377
Hpy166II GTNNAC 2 cut(s) 724, 826
Hpy188I TCNGA 7 cut(s) 87, 212, 352, 522, 691, 703, 874
Hpy8I GTNNAC 2 cut(s) 724, 826
HpyAV CCTTC 3 cut(s) 155, 561, 804
HpyCH4III ACNGT 6 cut(s) 8, 281, 342, 472, 728, 749
HpyCH4IV ACGT 5 cut(s) 261, 271, 412, 425, 828
HpyCH4V TGCA 6 cut(s) 312, 467, 671, 698, 995, 1007
HpyF3I CTNAG 5 cut(s) 209, 306, 351, 519, 834
HpySE526I ACGT 5 cut(s) 261, 271, 412, 425, 828
Hsp92I GRCGYC 1 cut(s) 425
Hsp92II CATG 3 cut(s) 239, 334, 698
Ksp22I TGATCA 1 cut(s) 646
KspI CCGCGG 1 cut(s) 438
Kzo9I GATC 7 cut(s) 89, 400, 526, 632, 646, 869, 949
LmnI GCTCC 4 cut(s) 123, 164, 547, 598
LpnPI CCDG 6 cut(s) 226, 348, 603, 632, 750, 996
Lsp1109I GCAGC 8 cut(s) 436, 439, 442, 451, 455, 458, 489, 1019
LweI GCATC 3 cut(s) 528, 658, 707
MaeI CTAG 3 cut(s) 174, 393, 851
MaeII ACGT 5 cut(s) 261, 271, 412, 425, 828
MaeIII GTNAC 4 cut(s) 131, 267, 408, 749
MalI GATC 7 cut(s) 91, 402, 528, 634, 648, 871, 951
MbiI CCGCTC 1 cut(s) 126
MboI GATC 7 cut(s) 89, 400, 526, 632, 646, 869, 949
MboII GAAGA 6 cut(s) 257, 346, 366, 677, 793, 1026
MflI RGATCY 2 cut(s) 632, 949
MlsI TGGCCA 1 cut(s) 659
MluCI AATT 6 cut(s) 46, 71, 622, 683, 761, 1044
MluNI TGGCCA 1 cut(s) 659
MlyI GAGTC 6 cut(s) 86, 132, 335, 362, 884, 927
MmeI TCCRAC 1 cut(s) 966
Mox20I TGGCCA 1 cut(s) 659
Mph1103I ATGCAT 1 cut(s) 700
MscI TGGCCA 1 cut(s) 659
MseI TTAA 2 cut(s) 228, 764
Msp20I TGGCCA 1 cut(s) 659
MspA1I CMGCKG 5 cut(s) 362, 437, 449, 502, 1010
MvnI CGCG 1 cut(s) 437
NdeII GATC 7 cut(s) 89, 400, 526, 632, 646, 869, 949
NheI GCTAGC 1 cut(s) 850
NlaIII CATG 3 cut(s) 239, 334, 698
NlaIV GGNNCC 2 cut(s) 549, 634
NmeAIII GCCGAG 1 cut(s) 96
NmuCI GTSAC 3 cut(s) 131, 267, 749
NsiI ATGCAT 1 cut(s) 700
PfeI GAWTC 1 cut(s) 1031
PleI GAGTC 6 cut(s) 85, 132, 334, 361, 884, 926
PmaCI CACGTG 2 cut(s) 262, 272
PmlI CACGTG 2 cut(s) 262, 272
PpsI GAGTC 6 cut(s) 85, 132, 334, 361, 884, 926
Ppu21I YACGTR 3 cut(s) 262, 272, 413
PshAI GACNNNNGTC 1 cut(s) 262
PspCI CACGTG 2 cut(s) 262, 272
PspN4I GGNNCC 2 cut(s) 549, 634
PspPI GGNCC 1 cut(s) 768
PstNI CAGNNNCTG 2 cut(s) 449, 452
PsuI RGATCY 2 cut(s) 632, 949
PvuII CAGCTG 3 cut(s) 449, 502, 1010
RsaI GTAC 3 cut(s) 283, 474, 961
RsaNI GTAC 3 cut(s) 282, 473, 960
SacII CCGCGG 1 cut(s) 438
SaqAI TTAA 2 cut(s) 228, 764
Sau3AI GATC 7 cut(s) 89, 400, 526, 632, 646, 869, 949
Sau96I GGNCC 1 cut(s) 768
SchI GAGTC 6 cut(s) 86, 132, 335, 362, 884, 927
SfaNI GCATC 3 cut(s) 528, 658, 707
SfcI CTRYAG 2 cut(s) 497, 745
Sfr303I CCGCGG 1 cut(s) 438
SgrBI CCGCGG 1 cut(s) 438
SinI GGWCC 1 cut(s) 768
SmlI CTYRAG 1 cut(s) 953
SmoI CTYRAG 1 cut(s) 953
Sse9I AATT 6 cut(s) 46, 71, 622, 683, 761, 1044
SspMI CTAG 3 cut(s) 174, 393, 851
StyI CCWWGG 3 cut(s) 66, 392, 660
TaaI ACNGT 6 cut(s) 8, 281, 342, 472, 728, 749
TaiI ACGT 5 cut(s) 264, 274, 415, 428, 831
TaqI TCGA 1 cut(s) 921
TasI AATT 6 cut(s) 46, 71, 622, 683, 761, 1044
TauI GCSGC 7 cut(s) 129, 362, 440, 443, 565, 577, 808
TfiI GAWTC 1 cut(s) 1031
Tru1I TTAA 2 cut(s) 228, 764
Tru9I TTAA 2 cut(s) 228, 764
TscAI CASTG 7 cut(s) 13, 314, 424, 492, 519, 678, 754
TseFI GTSAC 3 cut(s) 131, 267, 749
TseI GCWGC 8 cut(s) 443, 446, 449, 452, 455, 464, 502, 1007
Tsp45I GTSAC 3 cut(s) 131, 267, 749
TspDTI ATGAA 6 cut(s) 347, 497, 615, 695, 794, 1026
TspRI CASTG 7 cut(s) 13, 314, 424, 492, 519, 678, 754
VpaK11BI GGWCC 1 cut(s) 768
XapI RAATTY 1 cut(s) 622
XcmI CCANNNNNNNNNTGG 1 cut(s) 626
XmaJI CCTAGG 1 cut(s) 392
XmiI GTMKAC 2 cut(s) 723, 825
XspI CTAG 3 cut(s) 174, 393, 851
ZraI GACGTC 1 cut(s) 426
Zsp2I ATGCAT 1 cut(s) 700
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.