Rroxscaffold_4G00324450
MYB Family

Myb/SANT-like DNA-binding domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
OG0013444
Physical Location & Seq
Reverse (-)
55873850 .. 55876093
2244 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00324450.1

Sequence Viewer

Length: 1017 bp
ATGGAGAAAGAGGGTAACCAGGATCAAAACCCATCTCTCCTCTCTAACAATTTGGAGTCTCCAAGATCAAAACCCTTGATTGGTAGTGACAGACTGAAGAGAGATGAGTGGAGTGAAGGAGCTGTGTCTAGTCTTCTGGAGGCTTATGAGGCCAAATGGGTTCTCAGAAACAGAGCCAAGCTCAAAGGCCATGACTGGGAAGATGTAGCCAGACACGTCTCGTCACGTGCCAGTTGCTCCAAGTCCCCCAAGACTCAGACGCAGTGCAAGAACAAGATTGAGTCCATGAAGAAACGCTACCGTTCCGAGTCGGCCACGGCTGATGGCTCATCTTGGCCTCTCTATCCAAGACTTGATCTTTTGTTGCGTGGCAGCGGACCACCTCCACCCACAGCAACAGCAGCAACTGTTGTAGCAGCTGTAGCTACTTCACCGGCGCCGCCGCAACAATCACCGGTACCGGCTCCACTGGCTCATCATAGCAACCATGCTCTGATGCTATTGGAGCCATCAGTGCCGGTGTCATCGCCGCCTCAACCACCGCCTCCACAGCCACCTCCGCCACATTTAGGAACTGCCCAAAATTCATATGGGTCCGATGGTGTTGATAGGGATGCCAAGGAAGATGGAGTGGGGATGAAATTATCAGACCATGCATCAGACAAGAACCCATTGGAGATAGACAGTAGCACACCAGCCCTTTATAGTGATAAGGAAAAGTTAAGGTCCAAAAGAATGAAGAGGAAAATCGAGAAGAAGACGCGAAGAAGAAGGGAGGAATTAGAGATAGCCGAGAGCATAAGATGGTTAGCCGAGGTTGTGGTAAGATCCGAGCAATCGCGAATGGACACAATGAGAGACATAGAGAGGATGAGAGTTGAAGCGGAGGCCAAGAGAGGAGAGATGGATCTGAAGCGCACAGAAATTATTGCCAATACCCAGTTGGAGATTGCAAGGATCTTTGCTGCTGGTGTTGGCAAAGGTGTTGATTCTTCACTAAGAATTGGAAGAAGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-bind_4

Protein Analysis

338

Amino Acids

37.41

Weight (kDa)

9.44

Isoelectric Point (pI)

67.88

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-bind_4 PF13837 34 - 120 2.9e-16 Myb/SANT-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013444)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G54390 AT3G54390
fragaria_vesca FvH4_7g03380
malus_domestica MD02G1283400.v1.1 MD07G1048900.v1.1
prunus_persica Prupe.2G039000_v2.0.a1
pyrus_communis pycom02g24150 pycom07g03550
rosa_chinensis RchiOBHm_Chr1g0325721
rosa_laevigata RLG00000030111
rosa_multiflora Rmu_sc0000703.1_g000004
rosa_roxburghii Rroxscaffold_4G00324450
rosa_rugosa Rorug01G0053900
rosa_samantha Rh1AG069600 Rh1BG056900 Rh1CG070100 Rh1DG074700
rosa_wichuraiana Rw1G005750

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 457
AccB1I GGYRCC 2 cut(s) 436, 457
AccII CGCG 2 cut(s) 763, 841
AciI CCGC 7 cut(s) 375, 440, 443, 530, 542, 560, 884
AclWI GGATC 4 cut(s) 30, 822, 915, 965
AcoI YGGCCR 1 cut(s) 312
AcsI RAATTY 1 cut(s) 583
AcuI CTGAAG 2 cut(s) 116, 932
AcvI CACGTG 1 cut(s) 227
AcyI GRCGYC 1 cut(s) 437
AfaI GTAC 1 cut(s) 459
AfiI CCNNNNNNNGG 3 cut(s) 80, 196, 569
AflIII ACRYGT 1 cut(s) 214
AgeI ACCGGT 1 cut(s) 454
AgsI TTSAA 1 cut(s) 881
AjiI CACGTC 1 cut(s) 217
AjnI CCWGG 1 cut(s) 18
AluBI AGCT 4 cut(s) 122, 181, 419, 425
AluI AGCT 4 cut(s) 122, 181, 419, 425
Alw26I GTCTC 3 cut(s) 63, 223, 852
AlwI GGATC 4 cut(s) 30, 822, 915, 965
AlwNI CAGNNNCTG 1 cut(s) 407
AoxI GGCC 5 cut(s) 150, 187, 312, 335, 888
ApeKI GCWGC 4 cut(s) 372, 401, 416, 965
ApoI RAATTY 1 cut(s) 583
AsiGI ACCGGT 1 cut(s) 454
Asp718I GGTACC 1 cut(s) 457
AspLEI GCGC 2 cut(s) 439, 918
AspS9I GGNCC 3 cut(s) 377, 594, 726
AsuHPI GGTGA 2 cut(s) 423, 444
AvaII GGWCC 3 cut(s) 377, 594, 726
BanI GGYRCC 2 cut(s) 436, 457
BarI GAAGNNNNNNTAC 2 cut(s) 281, 313
BbrPI CACGTG 1 cut(s) 227
BbsI GAAGAC 2 cut(s) 125, 764
BbvI GCAGC 4 cut(s) 384, 413, 428, 952
BccI CCATC 7 cut(s) 40, 317, 517, 593, 620, 798, 898
BceAI ACGGC 1 cut(s) 333
BciT130I CCWGG 1 cut(s) 20
BcoDI GTCTC 3 cut(s) 63, 223, 852
BfaI CTAG 1 cut(s) 129
BfmI CTRYAG 1 cut(s) 420
BfoI RGCGCY 1 cut(s) 440
BisI GCNGC 7 cut(s) 373, 402, 417, 440, 443, 530, 966
BlsI GCNGC 7 cut(s) 374, 403, 418, 441, 444, 531, 967
Bme1390I CCNGG 1 cut(s) 20
Bme18I GGWCC 3 cut(s) 377, 594, 726
BmgBI CACGTC 1 cut(s) 217
BmgT120I GGNCC 3 cut(s) 377, 594, 726
BmiI GGNNCC 5 cut(s) 438, 459, 465, 507, 595
BmrFI CCNGG 1 cut(s) 20
BmrI ACTGGG 2 cut(s) 205, 934
BmsI GCATC 3 cut(s) 486, 604, 665
BmuI ACTGGG 2 cut(s) 205, 934
BpiI GAAGAC 2 cut(s) 125, 764
BplI GAGNNNNNCTC 2 cut(s) 165, 197
BpmI CTGGAG 1 cut(s) 158
BsaAI YACGTR 1 cut(s) 227
BsaHI GRCGYC 1 cut(s) 437
BsaJI CCNNGG 3 cut(s) 315, 618, 813
BsaWI WCCGGW 1 cut(s) 454
Bsc4I CCNNNNNNNGG 3 cut(s) 80, 196, 569
Bse118I RCCGGY 4 cut(s) 433, 454, 460, 517
Bse1I ACTGG 4 cut(s) 200, 231, 474, 940
BseBI CCWGG 1 cut(s) 20
BseDI CCNNGG 3 cut(s) 315, 618, 813
BseGI GGATG 3 cut(s) 619, 642, 876
BseLI CCNNNNNNNGG 3 cut(s) 80, 196, 569
BseMII CTCAG 2 cut(s) 178, 269
BseNI ACTGG 4 cut(s) 200, 231, 474, 940
BseRI GAGGAG 2 cut(s) 29, 912
BseXI GCAGC 4 cut(s) 384, 413, 428, 952
Bsh1236I CGCG 2 cut(s) 763, 841
BshFI GGCC 5 cut(s) 152, 189, 314, 337, 890
BshNI GGYRCC 2 cut(s) 436, 457
BshTI ACCGGT 1 cut(s) 454
BsiSI CCGG 4 cut(s) 434, 455, 461, 518
BslFI GGGAC 1 cut(s) 229
BslI CCNNNNNNNGG 3 cut(s) 80, 196, 569
BsmAI GTCTC 3 cut(s) 63, 223, 852
BsmBI CGTCTC 1 cut(s) 223
BsmFI GGGAC 1 cut(s) 229
BsnI GGCC 5 cut(s) 152, 189, 314, 337, 890
Bsp143I GATC 6 cut(s) 22, 65, 355, 827, 907, 957
Bsp68I TCGCGA 1 cut(s) 841
BspACI CCGC 7 cut(s) 375, 440, 443, 530, 542, 560, 884
BspANI GGCC 5 cut(s) 152, 189, 314, 337, 890
BspCNI CTCAG 2 cut(s) 177, 268
BspFNI CGCG 2 cut(s) 763, 841
BspLI GGNNCC 5 cut(s) 438, 459, 465, 507, 595
BspPI GGATC 4 cut(s) 30, 822, 915, 965
BspT107I GGYRCC 2 cut(s) 436, 457
BsrFI RCCGGY 4 cut(s) 433, 454, 460, 517
BsrI ACTGG 4 cut(s) 200, 231, 474, 940
BssAI RCCGGY 4 cut(s) 433, 454, 460, 517
BssECI CCNNGG 3 cut(s) 315, 618, 813
BssMI GATC 6 cut(s) 22, 65, 355, 827, 907, 957
BssNI GRCGYC 1 cut(s) 437
BssT1I CCWWGG 1 cut(s) 618
Bst2UI CCWGG 1 cut(s) 20
Bst4CI ACNGT 3 cut(s) 302, 409, 686
Bst6I CTCTTC 2 cut(s) 92, 734
BstACI GRCGYC 1 cut(s) 437
BstBAI YACGTR 1 cut(s) 227
BstDEI CTNAG 3 cut(s) 164, 255, 998
BstDSI CCRYGG 1 cut(s) 315
BstEII GGTNACC 1 cut(s) 14
BstF5I GGATG 3 cut(s) 619, 642, 876
BstFNI CGCG 2 cut(s) 763, 841
BstH2I RGCGCY 1 cut(s) 440
BstHHI GCGC 2 cut(s) 439, 918
BstKTI GATC 6 cut(s) 25, 68, 358, 830, 910, 960
BstMAI GTCTC 3 cut(s) 63, 223, 852
BstMBI GATC 6 cut(s) 22, 65, 355, 827, 907, 957
BstMWI GCNNNNNNNGC 8 cut(s) 149, 401, 422, 470, 505, 514, 550, 559
BstNI CCWGG 1 cut(s) 20
BstPI GGTNACC 1 cut(s) 14
BstSCI CCNGG 1 cut(s) 18
BstSFI CTRYAG 1 cut(s) 420
BstUI CGCG 2 cut(s) 763, 841
BstV1I GCAGC 4 cut(s) 384, 413, 428, 952
BstV2I GAAGAC 2 cut(s) 125, 764
BstX2I RGATCY 3 cut(s) 827, 907, 957
BstYI RGATCY 3 cut(s) 827, 907, 957
BsuRI GGCC 5 cut(s) 152, 189, 314, 337, 890
BtgI CCRYGG 1 cut(s) 315
BtgZI GCGATG 1 cut(s) 510
BtrI CACGTC 1 cut(s) 217
BtsCI GGATG 3 cut(s) 619, 642, 876
BtsI GCAGTG 1 cut(s) 269
BtsIMutI CAGTG 3 cut(s) 269, 467, 519
BtuMI TCGCGA 1 cut(s) 841
CaiI CAGNNNCTG 1 cut(s) 407
CfoI GCGC 2 cut(s) 439, 918
Cfr10I RCCGGY 4 cut(s) 433, 454, 460, 517
Cfr13I GGNCC 3 cut(s) 377, 594, 726
CseI GACGC 2 cut(s) 268, 769
Csp6I GTAC 1 cut(s) 458
CspAI ACCGGT 1 cut(s) 454
CviAII CATG 4 cut(s) 191, 286, 488, 653
CviQI GTAC 1 cut(s) 458
DdeI CTNAG 3 cut(s) 164, 255, 998
DinI GGCGCC 1 cut(s) 438
DpnI GATC 6 cut(s) 24, 67, 357, 829, 909, 959
DpnII GATC 6 cut(s) 22, 65, 355, 827, 907, 957
EaeI YGGCCR 1 cut(s) 312
Eam1104I CTCTTC 2 cut(s) 92, 734
EarI CTCTTC 2 cut(s) 92, 734
EciI GGCGGA 1 cut(s) 549
Eco130I CCWWGG 1 cut(s) 618
Eco47I GGWCC 3 cut(s) 377, 594, 726
Eco57I CTGAAG 2 cut(s) 116, 932
Eco72I CACGTG 1 cut(s) 227
Eco91I GGTNACC 1 cut(s) 14
EcoO65I GGTNACC 1 cut(s) 14
EcoRII CCWGG 1 cut(s) 18
EcoT14I CCWWGG 1 cut(s) 618
EcoT22I ATGCAT 1 cut(s) 658
EgeI GGCGCC 1 cut(s) 438
EheI GGCGCC 1 cut(s) 438
ErhI CCWWGG 1 cut(s) 618
Esp3I CGTCTC 1 cut(s) 223
FaeI CATG 4 cut(s) 194, 289, 491, 656
FaqI GGGAC 1 cut(s) 229
FatI CATG 4 cut(s) 190, 285, 487, 652
FauNDI CATATG 1 cut(s) 589
Fnu4HI GCNGC 7 cut(s) 373, 402, 417, 440, 443, 530, 966
FokI GGATG 3 cut(s) 626, 649, 883
Fsp4HI GCNGC 7 cut(s) 373, 402, 417, 440, 443, 530, 966
FspBI CTAG 1 cut(s) 129
GlaI GCGC 2 cut(s) 438, 917
GluI GCNGC 7 cut(s) 373, 402, 417, 440, 443, 530, 966
GsuI CTGGAG 1 cut(s) 158
HaeII RGCGCY 1 cut(s) 440
HaeIII GGCC 5 cut(s) 152, 189, 314, 337, 890
HapII CCGG 4 cut(s) 434, 455, 461, 518
HgaI GACGC 2 cut(s) 268, 769
HhaI GCGC 2 cut(s) 439, 918
Hin1I GRCGYC 1 cut(s) 437
Hin1II CATG 4 cut(s) 194, 289, 491, 656
Hin6I GCGC 2 cut(s) 437, 916
HinP1I GCGC 2 cut(s) 437, 916
HinfI GANTC 5 cut(s) 56, 253, 281, 308, 989
HpaII CCGG 4 cut(s) 434, 455, 461, 518
HphI GGTGA 2 cut(s) 423, 444
Hpy188I TCNGA 9 cut(s) 167, 258, 307, 495, 598, 649, 661, 832, 912
Hpy188III TCNNGA 3 cut(s) 137, 751, 840
HpyAV CCTTC 2 cut(s) 110, 765
HpyCH4III ACNGT 3 cut(s) 302, 409, 686
HpyCH4IV ACGT 2 cut(s) 216, 226
HpyCH4V TGCA 3 cut(s) 267, 656, 953
HpyF10VI GCNNNNNNNGC 8 cut(s) 149, 401, 422, 470, 505, 514, 550, 559
HpyF3I CTNAG 3 cut(s) 164, 255, 998
HpySE526I ACGT 2 cut(s) 216, 226
Hsp92I GRCGYC 1 cut(s) 437
Hsp92II CATG 4 cut(s) 194, 289, 491, 656
HspAI GCGC 2 cut(s) 437, 916
KasI GGCGCC 1 cut(s) 436
KpnI GGTACC 1 cut(s) 461
Kzo9I GATC 6 cut(s) 22, 65, 355, 827, 907, 957
LmnI GCTCC 4 cut(s) 119, 242, 469, 505
Lsp1109I GCAGC 4 cut(s) 384, 413, 428, 952
LweI GCATC 3 cut(s) 486, 604, 665
MaeI CTAG 1 cut(s) 129
MaeII ACGT 2 cut(s) 216, 226
MaeIII GTNAC 3 cut(s) 14, 86, 222
MalI GATC 6 cut(s) 24, 67, 357, 829, 909, 959
MboI GATC 6 cut(s) 22, 65, 355, 827, 907, 957
MflI RGATCY 3 cut(s) 827, 907, 957
MluCI AATT 6 cut(s) 49, 583, 641, 779, 924, 1002
Mly113I GGCGCC 1 cut(s) 437
MlyI GAGTC 4 cut(s) 65, 247, 290, 317
MmeI TCCRAC 1 cut(s) 924
Mph1103I ATGCAT 1 cut(s) 658
MseI TTAA 1 cut(s) 722
MspA1I CMGCKG 2 cut(s) 375, 419
MspI CCGG 4 cut(s) 434, 455, 461, 518
MspR9I CCNGG 1 cut(s) 20
MvaI CCWGG 1 cut(s) 20
MvnI CGCG 2 cut(s) 763, 841
MwoI GCNNNNNNNGC 8 cut(s) 149, 401, 422, 470, 505, 514, 550, 559
NarI GGCGCC 1 cut(s) 437
NdeI CATATG 1 cut(s) 589
NdeII GATC 6 cut(s) 22, 65, 355, 827, 907, 957
NlaIII CATG 4 cut(s) 194, 289, 491, 656
NlaIV GGNNCC 5 cut(s) 438, 459, 465, 507, 595
NmeAIII GCCGAG 2 cut(s) 817, 838
NmuCI GTSAC 2 cut(s) 86, 222
NruI TCGCGA 1 cut(s) 841
NsiI ATGCAT 1 cut(s) 658
PfeI GAWTC 1 cut(s) 989
PinAI ACCGGT 1 cut(s) 454
PkrI GCNGC 7 cut(s) 374, 403, 418, 441, 444, 531, 967
PleI GAGTC 4 cut(s) 64, 247, 289, 316
PluTI GGCGCC 1 cut(s) 440
PmaCI CACGTG 1 cut(s) 227
PmlI CACGTG 1 cut(s) 227
PpsI GAGTC 4 cut(s) 64, 247, 289, 316
Ppu21I YACGTR 1 cut(s) 227
Psp6I CCWGG 1 cut(s) 18
PspCI CACGTG 1 cut(s) 227
PspEI GGTNACC 1 cut(s) 14
PspGI CCWGG 1 cut(s) 18
PspN4I GGNNCC 5 cut(s) 438, 459, 465, 507, 595
PspPI GGNCC 3 cut(s) 377, 594, 726
PstNI CAGNNNCTG 1 cut(s) 407
PsuI RGATCY 3 cut(s) 827, 907, 957
PvuII CAGCTG 1 cut(s) 419
RruI TCGCGA 1 cut(s) 841
RsaI GTAC 1 cut(s) 459
RsaNI GTAC 1 cut(s) 458
SaqAI TTAA 1 cut(s) 722
SatI GCNGC 7 cut(s) 373, 402, 417, 440, 443, 530, 966
Sau3AI GATC 6 cut(s) 22, 65, 355, 827, 907, 957
Sau96I GGNCC 3 cut(s) 377, 594, 726
SchI GAGTC 4 cut(s) 65, 247, 290, 317
ScrFI CCNGG 1 cut(s) 20
SfaNI GCATC 3 cut(s) 486, 604, 665
SfcI CTRYAG 1 cut(s) 420
SfoI GGCGCC 1 cut(s) 438
SgrAI CRCCGGYG 1 cut(s) 433
SinI GGWCC 3 cut(s) 377, 594, 726
Sse9I AATT 6 cut(s) 49, 583, 641, 779, 924, 1002
SsiI CCGC 7 cut(s) 375, 440, 443, 530, 542, 560, 884
SspDI GGCGCC 1 cut(s) 436
SspMI CTAG 1 cut(s) 129
StyD4I CCNGG 1 cut(s) 18
StyI CCWWGG 1 cut(s) 618
TaaI ACNGT 3 cut(s) 302, 409, 686
TaiI ACGT 2 cut(s) 219, 229
TaqI TCGA 1 cut(s) 750
TasI AATT 6 cut(s) 49, 583, 641, 779, 924, 1002
TauI GCSGC 3 cut(s) 442, 445, 532
TfiI GAWTC 1 cut(s) 989
Tru1I TTAA 1 cut(s) 722
Tru9I TTAA 1 cut(s) 722
TscAI CASTG 3 cut(s) 269, 474, 519
TseFI GTSAC 2 cut(s) 86, 222
TseI GCWGC 4 cut(s) 372, 401, 416, 965
Tsp45I GTSAC 2 cut(s) 86, 222
TspDTI ATGAA 4 cut(s) 302, 576, 653, 752
TspRI CASTG 3 cut(s) 269, 474, 519
VpaK11BI GGWCC 3 cut(s) 377, 594, 726
XapI RAATTY 1 cut(s) 583
XcmI CCANNNNNNNNNTGG 2 cut(s) 587, 940
XspI CTAG 1 cut(s) 129
Zsp2I ATGCAT 1 cut(s) 658
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.