pycom07g03550
MYB Family

Myb/SANT-like DNA-binding domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr7
OG0013444
Physical Location & Seq
Reverse (-)
2967142 .. 2968635
1494 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom07g03550.2

Sequence Viewer

Length: 1062 bp
ATGGACAACGAAACAAACCAAGAAAGCACATCTCTACTCCCAAACAATTACACCACCACAACCACCAAGGAATTAGAGTCTCCTCCGAGATCAAAACCTGCTCAACAGCCTCCTCTCGGCGGCAGCGGCAGTGACAGGCTGAAAAGAGATGAGTGGAGCGAAGGGGCAGTTTCTACCCTCCTTGAAGCCTATGAGACCAAATGGGCTCTCAGAAACAGAGCCAAACTCAAAGGCCATGACTGGGAAGATGTGGCGACACACGTGTCATCACGCGCCAACTGTACCAAGTCTCCCAAGACCCAGACTCAGTGCAAGAACAAGATTGAGTCCATGAAGAAACGGTACCGTTCTGAATCCGCCACTGCTGATGGGTCCTCCTGGCCTCTGTATCCTAGGCTTGATCTTTTGTTACGTGGCAGTGGACCATCCCCAACAGCAGCAGCGGCAGCTGCTGCCGCTGCTGCTGCAACTGTTCCTCCCTCGCTGCAGCCACCACTACCACTGCATCCCCCACTCCCTCAGAACAATCATCCTCTGATGCTATTGGAGCCATCGGCTCCAGCGCCACTACCGCCGCCGCCACCACTTCCTGCTCCTCCTCCACTCATGGGGACTGCCCAGAATTCCTTTGGATCCAATGGTGTTGATCATAGGGTGGCCAAGGAAGATGGAGGGGGGATGAAATTATCAGATCATGCATCAGACAAGAACCCTTTGGAGGTAGACAGTAGCACACCAGCTCTCTATAGTGACAAGGAAAAACTAAGGTCCAAGAGAATGAAGAGAAAAATCGAGAAAAAGAAGCGGCGGAGGCGGGAGGAAGTAGAGGTAGCAGAGAGCATAAGATGGTTAGCAGAAGTAGTGGTAAGATCAGAGCAAGCAAGAATGGATACAATGAGGGAGATAGAGAGGATGAGAGCCGAGGCAGAGGCGAAGCGAGGAGAAATGGATCTCAAGCGCACCGAAATTATTGCGAACACGCAGTTGGAGATTGCAAGGCTGTTTGCAGCAGCAGGTGTTGGCAAAGGGGTTGATTCTTCATTGAGAATTGGAAGAAGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-bind_4

Protein Analysis

354

Amino Acids

38.72

Weight (kDa)

9.5

Isoelectric Point (pI)

62.1

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013444)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G54390 AT3G54390
fragaria_vesca FvH4_7g03380
malus_domestica MD02G1283400.v1.1 MD07G1048900.v1.1
prunus_persica Prupe.2G039000_v2.0.a1
pyrus_communis pycom02g24150 pycom07g03550
rosa_chinensis RchiOBHm_Chr1g0325721
rosa_laevigata RLG00000030111
rosa_multiflora Rmu_sc0000703.1_g000004
rosa_roxburghii Rroxscaffold_4G00324450
rosa_rugosa Rorug01G0053900
rosa_samantha Rh1AG069600 Rh1BG056900 Rh1CG070100 Rh1DG074700
rosa_wichuraiana Rw1G005750

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 1004
AasI GACNNNNNNGTC 1 cut(s) 262
Acc36I ACCTGC 2 cut(s) 106, 1004
Acc65I GGTACC 1 cut(s) 342
AccB1I GGYRCC 1 cut(s) 342
AccI GTMKAC 1 cut(s) 723
AccII CGCG 1 cut(s) 273
AclWI GGATC 3 cut(s) 627, 640, 957
AcoI YGGCCR 1 cut(s) 657
AcsI RAATTY 1 cut(s) 622
AcvI CACGTG 1 cut(s) 262
AfaI GTAC 2 cut(s) 283, 344
AfiI CCNNNNNNNGG 5 cut(s) 116, 119, 241, 608, 718
AflIII ACRYGT 2 cut(s) 259, 261
AgsI TTSAA 1 cut(s) 185
AjnI CCWGG 1 cut(s) 377
AjuI GAANNNNNNNTTGG 2 cut(s) 968, 1000
AluBI AGCT 2 cut(s) 449, 740
AluI AGCT 2 cut(s) 449, 740
Alw26I GTCTC 3 cut(s) 84, 188, 294
AlwI GGATC 3 cut(s) 627, 640, 957
AlwNI CAGNNNCTG 1 cut(s) 452
AoxI GGCC 3 cut(s) 232, 380, 657
ApoI RAATTY 1 cut(s) 622
Asp718I GGTACC 1 cut(s) 342
AspA2I CCTAGG 1 cut(s) 392
AspLEI GCGC 3 cut(s) 275, 565, 960
AspS9I GGNCC 3 cut(s) 372, 422, 768
AvaII GGWCC 3 cut(s) 372, 422, 768
AvrII CCTAGG 1 cut(s) 392
BalI TGGCCA 1 cut(s) 659
BamHI GGATCC 1 cut(s) 632
BanI GGYRCC 1 cut(s) 342
BanII GRGCYC 1 cut(s) 208
BarI GAAGNNNNNNTAC 2 cut(s) 326, 358
BbrPI CACGTG 1 cut(s) 262
BccI CCATC 5 cut(s) 362, 433, 559, 662, 840
BcgI CGANNNNNNTGC 2 cut(s) 953, 987
BciT130I CCWGG 1 cut(s) 379
BciVI GTATCC 2 cut(s) 399, 883
BclI TGATCA 1 cut(s) 646
BcoDI GTCTC 3 cut(s) 84, 188, 294
BfaI CTAG 1 cut(s) 393
BfmI CTRYAG 2 cut(s) 485, 745
BfoI RGCGCY 1 cut(s) 566
BfuAI ACCTGC 2 cut(s) 106, 1004
BfuI GTATCC 2 cut(s) 399, 883
BlnI CCTAGG 1 cut(s) 392
Bme1390I CCNGG 1 cut(s) 379
Bme18I GGWCC 3 cut(s) 372, 422, 768
BmgT120I GGNCC 3 cut(s) 372, 422, 768
BmiI GGNNCC 5 cut(s) 344, 373, 549, 558, 634
BmrFI CCNGG 1 cut(s) 379
BmrI ACTGGG 1 cut(s) 250
BmsI GCATC 3 cut(s) 514, 528, 707
BmuI ACTGGG 1 cut(s) 250
BplI GAGNNNNNCTC 2 cut(s) 210, 242
BpmI CTGGAG 1 cut(s) 543
BpuEI CTTGAG 1 cut(s) 938
BsaAI YACGTR 2 cut(s) 262, 413
BsaI GGTCTC 1 cut(s) 188
BsaJI CCNNGG 4 cut(s) 66, 392, 660, 921
BsaXI ACNNNNNCTCC 4 cut(s) 274, 304, 460, 490
Bsc4I CCNNNNNNNGG 5 cut(s) 116, 119, 241, 608, 718
Bse1I ACTGG 1 cut(s) 245
BseBI CCWGG 1 cut(s) 379
BseDI CCNNGG 4 cut(s) 66, 392, 660, 921
BseGI GGATG 5 cut(s) 425, 505, 529, 684, 918
BseLI CCNNNNNNNGG 5 cut(s) 116, 119, 241, 608, 718
BseMII CTCAG 3 cut(s) 223, 320, 533
BseNI ACTGG 1 cut(s) 245
BseRI GAGGAG 5 cut(s) 72, 102, 585, 588, 954
Bsh1236I CGCG 1 cut(s) 273
BshFI GGCC 3 cut(s) 234, 382, 659
BshNI GGYRCC 1 cut(s) 342
BslFI GGGAC 1 cut(s) 625
BslI CCNNNNNNNGG 5 cut(s) 116, 119, 241, 608, 718
BsmAI GTCTC 3 cut(s) 84, 188, 294
BsmFI GGGAC 1 cut(s) 625
BsnI GGCC 3 cut(s) 234, 382, 659
Bso31I GGTCTC 1 cut(s) 188
Bsp1286I GDGCHC 1 cut(s) 208
Bsp143I GATC 7 cut(s) 89, 400, 632, 646, 691, 869, 949
BspANI GGCC 3 cut(s) 234, 382, 659
BspCNI CTCAG 3 cut(s) 222, 319, 532
BspFNI CGCG 1 cut(s) 273
BspLI GGNNCC 5 cut(s) 344, 373, 549, 558, 634
BspMAI CTGCAG 1 cut(s) 489
BspMI ACCTGC 2 cut(s) 106, 1004
BspPI GGATC 3 cut(s) 627, 640, 957
BspT107I GGYRCC 1 cut(s) 342
BspTNI GGTCTC 1 cut(s) 188
BsrI ACTGG 1 cut(s) 245
BssECI CCNNGG 4 cut(s) 66, 392, 660, 921
BssMI GATC 7 cut(s) 89, 400, 632, 646, 691, 869, 949
BssT1I CCWWGG 3 cut(s) 66, 392, 660
Bst2UI CCWGG 1 cut(s) 379
Bst4CI ACNGT 5 cut(s) 281, 342, 347, 472, 728
Bst6I CTCTTC 1 cut(s) 776
BstAPI GCANNNNNTGC 1 cut(s) 452
BstBAI YACGTR 2 cut(s) 262, 413
BstC8I GCNNGC 1 cut(s) 879
BstDEI CTNAG 4 cut(s) 209, 306, 519, 764
BstF5I GGATG 5 cut(s) 425, 505, 529, 684, 918
BstFNI CGCG 1 cut(s) 273
BstH2I RGCGCY 1 cut(s) 566
BstHHI GCGC 3 cut(s) 275, 565, 960
BstKTI GATC 7 cut(s) 92, 403, 635, 649, 694, 872, 952
BstMAI GTCTC 3 cut(s) 84, 188, 294
BstMBI GATC 7 cut(s) 89, 400, 632, 646, 691, 869, 949
BstNI CCWGG 1 cut(s) 379
BstSCI CCNGG 1 cut(s) 377
BstSFI CTRYAG 2 cut(s) 485, 745
BstUI CGCG 1 cut(s) 273
BstX2I RGATCY 2 cut(s) 632, 949
BstYI RGATCY 2 cut(s) 632, 949
BsuI GTATCC 2 cut(s) 399, 883
BsuRI GGCC 3 cut(s) 234, 382, 659
BtsCI GGATG 5 cut(s) 425, 505, 529, 684, 918
BtsI GCAGTG 4 cut(s) 136, 360, 424, 500
BtsIMutI CAGTG 5 cut(s) 136, 314, 360, 424, 500
BveI ACCTGC 2 cut(s) 106, 1004
Cac8I GCNNGC 1 cut(s) 879
CaiI CAGNNNCTG 1 cut(s) 452
CfoI GCGC 3 cut(s) 275, 565, 960
Cfr13I GGNCC 3 cut(s) 372, 422, 768
Csp6I GTAC 2 cut(s) 282, 343
CviAII CATG 4 cut(s) 236, 331, 607, 695
CviQI GTAC 2 cut(s) 282, 343
DdeI CTNAG 4 cut(s) 209, 306, 519, 764
DpnI GATC 7 cut(s) 91, 402, 634, 648, 693, 871, 951
DpnII GATC 7 cut(s) 89, 400, 632, 646, 691, 869, 949
DrdI GACNNNNNNGTC 1 cut(s) 262
DseDI GACNNNNNNGTC 1 cut(s) 262
EaeI YGGCCR 1 cut(s) 657
Eam1104I CTCTTC 1 cut(s) 776
EarI CTCTTC 1 cut(s) 776
EciI GGCGGA 2 cut(s) 346, 823
Eco130I CCWWGG 3 cut(s) 66, 392, 660
Eco24I GRGCYC 1 cut(s) 208
Eco31I GGTCTC 1 cut(s) 188
Eco47I GGWCC 3 cut(s) 372, 422, 768
Eco72I CACGTG 1 cut(s) 262
EcoO109I RGGNCCY 1 cut(s) 372
EcoRI GAATTC 1 cut(s) 622
EcoRII CCWGG 1 cut(s) 377
EcoT14I CCWWGG 3 cut(s) 66, 392, 660
EcoT22I ATGCAT 1 cut(s) 700
EcoT38I GRGCYC 1 cut(s) 208
ErhI CCWWGG 3 cut(s) 66, 392, 660
FaeI CATG 4 cut(s) 239, 334, 610, 698
FaiI YATR 8 cut(s) 192, 237, 332, 608, 651, 696, 747, 842
FaqI GGGAC 1 cut(s) 625
FatI CATG 4 cut(s) 235, 330, 606, 694
FauI CCCGC 1 cut(s) 807
FbaI TGATCA 1 cut(s) 646
FblI GTMKAC 1 cut(s) 723
FokI GGATG 5 cut(s) 412, 492, 516, 691, 925
FriOI GRGCYC 1 cut(s) 208
FspBI CTAG 1 cut(s) 393
GlaI GCGC 3 cut(s) 274, 564, 959
GsuI CTGGAG 1 cut(s) 543
HaeII RGCGCY 1 cut(s) 566
HaeIII GGCC 3 cut(s) 234, 382, 659
HhaI GCGC 3 cut(s) 275, 565, 960
Hin1II CATG 4 cut(s) 239, 334, 610, 698
Hin6I GCGC 3 cut(s) 273, 563, 958
HinP1I GCGC 3 cut(s) 273, 563, 958
HinfI GANTC 5 cut(s) 77, 304, 326, 353, 1034
Hpy166II GTNNAC 2 cut(s) 422, 724
Hpy188I TCNGA 8 cut(s) 87, 212, 352, 522, 537, 691, 703, 874
Hpy188III TCNNGA 1 cut(s) 793
Hpy8I GTNNAC 2 cut(s) 422, 724
HpyAV CCTTC 1 cut(s) 155
HpyCH4III ACNGT 5 cut(s) 281, 342, 347, 472, 728
HpyCH4IV ACGT 2 cut(s) 261, 412
HpyCH4V TGCA 7 cut(s) 312, 467, 487, 505, 698, 995, 1007
HpyF3I CTNAG 4 cut(s) 209, 306, 519, 764
HpySE526I ACGT 2 cut(s) 261, 412
Hsp92II CATG 4 cut(s) 239, 334, 610, 698
HspAI GCGC 3 cut(s) 273, 563, 958
KpnI GGTACC 1 cut(s) 346
Ksp22I TGATCA 1 cut(s) 646
Kzo9I GATC 7 cut(s) 89, 400, 632, 646, 691, 869, 949
LmnI GCTCC 4 cut(s) 156, 547, 562, 598
LweI GCATC 3 cut(s) 514, 528, 707
MaeI CTAG 1 cut(s) 393
MaeII ACGT 2 cut(s) 261, 412
MaeIII GTNAC 3 cut(s) 131, 408, 749
MalI GATC 7 cut(s) 91, 402, 634, 648, 693, 871, 951
MboI GATC 7 cut(s) 89, 400, 632, 646, 691, 869, 949
MboII GAAGA 5 cut(s) 257, 346, 677, 793, 1029
MflI RGATCY 2 cut(s) 632, 949
MhlI GDGCHC 1 cut(s) 208
MlsI TGGCCA 1 cut(s) 659
MluCI AATT 6 cut(s) 46, 71, 622, 683, 966, 1047
MluNI TGGCCA 1 cut(s) 659
MlyI GAGTC 3 cut(s) 86, 298, 335
MmeI TCCRAC 1 cut(s) 966
Mox20I TGGCCA 1 cut(s) 659
Mph1103I ATGCAT 1 cut(s) 700
MscI TGGCCA 1 cut(s) 659
MseI TTAA 1 cut(s) 1060
Msp20I TGGCCA 1 cut(s) 659
MspA1I CMGCKG 4 cut(s) 126, 443, 449, 458
MspR9I CCNGG 1 cut(s) 379
MvaI CCWGG 1 cut(s) 379
MvnI CGCG 1 cut(s) 273
NdeII GATC 7 cut(s) 89, 400, 632, 646, 691, 869, 949
NlaIII CATG 4 cut(s) 239, 334, 610, 698
NlaIV GGNNCC 5 cut(s) 344, 373, 549, 558, 634
NmeAIII GCCGAG 2 cut(s) 96, 946
NmuCI GTSAC 2 cut(s) 131, 749
NsiI ATGCAT 1 cut(s) 700
PaqCI CACCTGC 1 cut(s) 1004
PfeI GAWTC 2 cut(s) 353, 1034
PleI GAGTC 3 cut(s) 85, 298, 334
PmaCI CACGTG 1 cut(s) 262
PmlI CACGTG 1 cut(s) 262
PpsI GAGTC 3 cut(s) 85, 298, 334
Ppu21I YACGTR 2 cut(s) 262, 413
PpuMI RGGWCCY 1 cut(s) 372
Psp5II RGGWCCY 1 cut(s) 372
Psp6I CCWGG 1 cut(s) 377
PspCI CACGTG 1 cut(s) 262
PspGI CCWGG 1 cut(s) 377
PspN4I GGNNCC 5 cut(s) 344, 373, 549, 558, 634
PspPI GGNCC 3 cut(s) 372, 422, 768
PspPPI RGGWCCY 1 cut(s) 372
PstI CTGCAG 1 cut(s) 489
PstNI CAGNNNCTG 1 cut(s) 452
PsuI RGATCY 2 cut(s) 632, 949
PvuII CAGCTG 1 cut(s) 449
RsaI GTAC 2 cut(s) 283, 344
RsaNI GTAC 2 cut(s) 282, 343
SaqAI TTAA 1 cut(s) 1060
Sau3AI GATC 7 cut(s) 89, 400, 632, 646, 691, 869, 949
Sau96I GGNCC 3 cut(s) 372, 422, 768
SchI GAGTC 3 cut(s) 86, 298, 335
ScrFI CCNGG 1 cut(s) 379
SduI GDGCHC 1 cut(s) 208
SetI ASST 9 cut(s) 100, 264, 415, 451, 723, 742, 770, 831, 1018
SfaNI GCATC 3 cut(s) 514, 528, 707
SfcI CTRYAG 2 cut(s) 485, 745
SinI GGWCC 3 cut(s) 372, 422, 768
SmlI CTYRAG 1 cut(s) 953
SmoI CTYRAG 1 cut(s) 953
Sse9I AATT 6 cut(s) 46, 71, 622, 683, 966, 1047
SspMI CTAG 1 cut(s) 393
StyD4I CCNGG 1 cut(s) 377
StyI CCWWGG 3 cut(s) 66, 392, 660
TaaI ACNGT 5 cut(s) 281, 342, 347, 472, 728
TaiI ACGT 2 cut(s) 264, 415
TaqI TCGA 1 cut(s) 792
TasI AATT 6 cut(s) 46, 71, 622, 683, 966, 1047
TauI GCSGC 7 cut(s) 123, 129, 446, 458, 577, 580, 808
TfiI GAWTC 2 cut(s) 353, 1034
Tru1I TTAA 1 cut(s) 1060
Tru9I TTAA 1 cut(s) 1060
TscAI CASTG 5 cut(s) 136, 314, 367, 424, 507
TseFI GTSAC 2 cut(s) 131, 749
Tsp45I GTSAC 2 cut(s) 131, 749
TspDTI ATGAA 4 cut(s) 347, 695, 794, 1029
TspRI CASTG 5 cut(s) 136, 314, 367, 424, 507
VpaK11BI GGWCC 3 cut(s) 372, 422, 768
XapI RAATTY 1 cut(s) 622
XcmI CCANNNNNNNNNTGG 1 cut(s) 626
XmaJI CCTAGG 1 cut(s) 392
XmiI GTMKAC 1 cut(s) 723
XspI CTAG 1 cut(s) 393
Zsp2I ATGCAT 1 cut(s) 700
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.