MD07G1048900.v1.1
MYB Family

Myb/SANT-like DNA-binding domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr07
OG0013444
Physical Location & Seq
Reverse (-)
4187133 .. 4189293
2161 bp
Loading structure...
UTR
Exon/CDS
Intron
MD07G1048900.v1.1.491

Sequence Viewer

Length: 1062 bp
ATGGACAACGAAACAAACCAAGAAAACACATCTCTACTCCCAAACAATTACACCACCACAAACACCAAGGAATTAGAGTCTCCTCCGAGATCAAAACCTCCTCAACAGCCTCCTCTCGGCGGCAGCGGCAGTGACAGGCTCAAAAGAGATGAGTGGAGTGAAGGGGCAGTTTCTACCCTCCTTGAAGCCTATGAGACCAAATGGGCTCTCAGAAACAGAGCCAAACTCAAAGGCCATGACTGGGAAGATGTGGCGATACACGTGTCATCACGCGCCAACTGTACCAAGTCTCCCAAGACCCAGACTCAGTGCAAGAACAAGATTGAGTCCATGAAGAAACGGTACCGTTCTGAATCCGCCACTGCTGATGGTTCATCCTGGCCTCTGTATCCTAGGCTTGATCTTTTGTTACGTGGCAGTGGGCTATCCCCAACAACAGCAGCGGCAGCTGCTGCCGCTGCTGCAGCAACTGTACCTCCCTCGCTGCAGCCACCACTACCACTGCATCCTCCAATCCCTCAGAACAATCATCCTCTGATGCTATTGGAGCCATCGGCTCCAGCGCCACTACCGCCGCCACCACTACCTCCTGCTCCTCCTCCACTTATGGGGGCTGCCCAGAATTCCTTTGGATCCAATGGTGTTGATCATAGGGTGGCCAAGGAAGATGGAGGGGGGATGAAATTGTCAGATCATGCATCAGACAAGAACCCTTTGGAGGTAGACAGTAGCACACCAGCTCTATATAGTGACAAGGAAAAACTAAGGTCCAAGAGAATGAAGAGAAAAATCGAGAAAAAGAAGCGGCGGAGGCGGGAGGAAGTAGAGGTAGCAGAGAGCATAAGATGGTTAGCAGAAGTTGTGGTAAGATCAGAGCAAGCAAGAATGGATACAATGAGGGAGATAGAGAGGATGAGAGCCGAGGCAGAGGCGAAGCGAGGAGAAATGGATCTCAAGCGCACCGAAATTATTGCGAACACGCAGTTGGAGATTGCAAGGCTGTTTGCAGCAGCAGGTGTTGGCAAAGGGGTTGATTCTTCATTAAGAATTGGAAGAAGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-bind_4

Protein Analysis

354

Amino Acids

38.82

Weight (kDa)

9.5

Isoelectric Point (pI)

60.37

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-bind_4 PF13837 49 - 135 4.8e-16 Myb/SANT-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013444)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G54390 AT3G54390
fragaria_vesca FvH4_7g03380
malus_domestica MD02G1283400.v1.1 MD07G1048900.v1.1
prunus_persica Prupe.2G039000_v2.0.a1
pyrus_communis pycom02g24150 pycom07g03550
rosa_chinensis RchiOBHm_Chr1g0325721
rosa_laevigata RLG00000030111
rosa_multiflora Rmu_sc0000703.1_g000004
rosa_roxburghii Rroxscaffold_4G00324450
rosa_rugosa Rorug01G0053900
rosa_samantha Rh1AG069600 Rh1BG056900 Rh1CG070100 Rh1DG074700
rosa_wichuraiana Rw1G005750

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 1004
Acc36I ACCTGC 1 cut(s) 1004
Acc65I GGTACC 1 cut(s) 342
AccB1I GGYRCC 1 cut(s) 342
AccI GTMKAC 1 cut(s) 723
AccII CGCG 1 cut(s) 273
AclWI GGATC 3 cut(s) 627, 640, 957
AcoI YGGCCR 1 cut(s) 657
AcsI RAATTY 1 cut(s) 622
AcvI CACGTG 1 cut(s) 262
AfaI GTAC 3 cut(s) 283, 344, 474
AfiI CCNNNNNNNGG 5 cut(s) 116, 119, 241, 608, 718
AflIII ACRYGT 2 cut(s) 259, 261
AgsI TTSAA 1 cut(s) 185
AjnI CCWGG 1 cut(s) 377
AjuI GAANNNNNNNTTGG 2 cut(s) 968, 1000
AluBI AGCT 2 cut(s) 449, 740
AluI AGCT 2 cut(s) 449, 740
Alw26I GTCTC 3 cut(s) 84, 188, 294
AlwI GGATC 3 cut(s) 627, 640, 957
AlwNI CAGNNNCTG 2 cut(s) 452, 470
AoxI GGCC 3 cut(s) 232, 380, 657
ApoI RAATTY 1 cut(s) 622
Asp718I GGTACC 1 cut(s) 342
AspA2I CCTAGG 1 cut(s) 392
AspLEI GCGC 3 cut(s) 275, 565, 960
AspS9I GGNCC 1 cut(s) 768
AvaII GGWCC 1 cut(s) 768
AvrII CCTAGG 1 cut(s) 392
BaeI ACNNNNGTAYC 2 cut(s) 248, 281
BalI TGGCCA 1 cut(s) 659
BamHI GGATCC 1 cut(s) 632
BanI GGYRCC 1 cut(s) 342
BanII GRGCYC 1 cut(s) 208
BarI GAAGNNNNNNTAC 2 cut(s) 326, 358
BbrPI CACGTG 1 cut(s) 262
BccI CCATC 4 cut(s) 362, 559, 662, 840
BcgI CGANNNNNNTGC 2 cut(s) 953, 987
BciT130I CCWGG 1 cut(s) 379
BciVI GTATCC 2 cut(s) 399, 883
BclI TGATCA 1 cut(s) 646
BcoDI GTCTC 3 cut(s) 84, 188, 294
BfaI CTAG 1 cut(s) 393
BfmI CTRYAG 2 cut(s) 462, 485
BfoI RGCGCY 1 cut(s) 566
BfuAI ACCTGC 1 cut(s) 1004
BfuI GTATCC 2 cut(s) 399, 883
BlnI CCTAGG 1 cut(s) 392
Bme1390I CCNGG 1 cut(s) 379
Bme18I GGWCC 1 cut(s) 768
BmgT120I GGNCC 1 cut(s) 768
BmiI GGNNCC 4 cut(s) 344, 549, 558, 634
BmrFI CCNGG 1 cut(s) 379
BmrI ACTGGG 1 cut(s) 250
BmsI GCATC 3 cut(s) 514, 528, 707
BmuI ACTGGG 1 cut(s) 250
BplI GAGNNNNNCTC 2 cut(s) 210, 242
BpmI CTGGAG 1 cut(s) 543
BpuEI CTTGAG 1 cut(s) 938
BsaAI YACGTR 2 cut(s) 262, 413
BsaI GGTCTC 1 cut(s) 188
BsaJI CCNNGG 4 cut(s) 66, 392, 660, 921
BsaXI ACNNNNNCTCC 4 cut(s) 274, 304, 460, 490
Bsc4I CCNNNNNNNGG 5 cut(s) 116, 119, 241, 608, 718
Bse1I ACTGG 1 cut(s) 245
BseBI CCWGG 1 cut(s) 379
BseDI CCNNGG 4 cut(s) 66, 392, 660, 921
BseGI GGATG 5 cut(s) 374, 505, 529, 684, 918
BseLI CCNNNNNNNGG 5 cut(s) 116, 119, 241, 608, 718
BseMII CTCAG 3 cut(s) 223, 320, 533
BseNI ACTGG 1 cut(s) 245
BseRI GAGGAG 6 cut(s) 72, 90, 102, 585, 588, 954
Bsh1236I CGCG 1 cut(s) 273
BshFI GGCC 3 cut(s) 234, 382, 659
BshNI GGYRCC 1 cut(s) 342
BslI CCNNNNNNNGG 5 cut(s) 116, 119, 241, 608, 718
BsmAI GTCTC 3 cut(s) 84, 188, 294
BsnI GGCC 3 cut(s) 234, 382, 659
Bso31I GGTCTC 1 cut(s) 188
Bsp1286I GDGCHC 1 cut(s) 208
Bsp143I GATC 7 cut(s) 89, 400, 632, 646, 691, 869, 949
BspANI GGCC 3 cut(s) 234, 382, 659
BspCNI CTCAG 3 cut(s) 222, 319, 532
BspFNI CGCG 1 cut(s) 273
BspLI GGNNCC 4 cut(s) 344, 549, 558, 634
BspMAI CTGCAG 2 cut(s) 466, 489
BspMI ACCTGC 1 cut(s) 1004
BspPI GGATC 3 cut(s) 627, 640, 957
BspT107I GGYRCC 1 cut(s) 342
BspTNI GGTCTC 1 cut(s) 188
BsrI ACTGG 1 cut(s) 245
BssECI CCNNGG 4 cut(s) 66, 392, 660, 921
BssMI GATC 7 cut(s) 89, 400, 632, 646, 691, 869, 949
BssT1I CCWWGG 3 cut(s) 66, 392, 660
Bst2UI CCWGG 1 cut(s) 379
Bst4CI ACNGT 5 cut(s) 281, 342, 347, 472, 728
Bst6I CTCTTC 1 cut(s) 776
BstAPI GCANNNNNTGC 1 cut(s) 452
BstBAI YACGTR 2 cut(s) 262, 413
BstC8I GCNNGC 1 cut(s) 879
BstDEI CTNAG 4 cut(s) 209, 306, 519, 764
BstF5I GGATG 5 cut(s) 374, 505, 529, 684, 918
BstFNI CGCG 1 cut(s) 273
BstH2I RGCGCY 1 cut(s) 566
BstHHI GCGC 3 cut(s) 275, 565, 960
BstKTI GATC 7 cut(s) 92, 403, 635, 649, 694, 872, 952
BstMAI GTCTC 3 cut(s) 84, 188, 294
BstMBI GATC 7 cut(s) 89, 400, 632, 646, 691, 869, 949
BstNI CCWGG 1 cut(s) 379
BstSCI CCNGG 1 cut(s) 377
BstSFI CTRYAG 2 cut(s) 462, 485
BstUI CGCG 1 cut(s) 273
BstX2I RGATCY 2 cut(s) 632, 949
BstYI RGATCY 2 cut(s) 632, 949
BsuI GTATCC 2 cut(s) 399, 883
BsuRI GGCC 3 cut(s) 234, 382, 659
BtsCI GGATG 5 cut(s) 374, 505, 529, 684, 918
BtsI GCAGTG 4 cut(s) 136, 360, 424, 500
BtsIMutI CAGTG 5 cut(s) 136, 314, 360, 424, 500
BveI ACCTGC 1 cut(s) 1004
Cac8I GCNNGC 1 cut(s) 879
CaiI CAGNNNCTG 2 cut(s) 452, 470
CfoI GCGC 3 cut(s) 275, 565, 960
Cfr13I GGNCC 1 cut(s) 768
Csp6I GTAC 3 cut(s) 282, 343, 473
CviAII CATG 3 cut(s) 236, 331, 695
CviQI GTAC 3 cut(s) 282, 343, 473
DdeI CTNAG 4 cut(s) 209, 306, 519, 764
DpnI GATC 7 cut(s) 91, 402, 634, 648, 693, 871, 951
DpnII GATC 7 cut(s) 89, 400, 632, 646, 691, 869, 949
EaeI YGGCCR 1 cut(s) 657
Eam1104I CTCTTC 1 cut(s) 776
EarI CTCTTC 1 cut(s) 776
EciI GGCGGA 2 cut(s) 346, 823
Eco130I CCWWGG 3 cut(s) 66, 392, 660
Eco24I GRGCYC 1 cut(s) 208
Eco31I GGTCTC 1 cut(s) 188
Eco47I GGWCC 1 cut(s) 768
Eco72I CACGTG 1 cut(s) 262
EcoRI GAATTC 1 cut(s) 622
EcoRII CCWGG 1 cut(s) 377
EcoT14I CCWWGG 3 cut(s) 66, 392, 660
EcoT22I ATGCAT 1 cut(s) 700
EcoT38I GRGCYC 1 cut(s) 208
ErhI CCWWGG 3 cut(s) 66, 392, 660
FaeI CATG 3 cut(s) 239, 334, 698
FaiI YATR 9 cut(s) 192, 237, 332, 608, 651, 696, 745, 747, 842
FatI CATG 3 cut(s) 235, 330, 694
FauI CCCGC 1 cut(s) 807
FbaI TGATCA 1 cut(s) 646
FblI GTMKAC 1 cut(s) 723
FokI GGATG 5 cut(s) 361, 492, 516, 691, 925
FriOI GRGCYC 1 cut(s) 208
FspBI CTAG 1 cut(s) 393
GlaI GCGC 3 cut(s) 274, 564, 959
GsuI CTGGAG 1 cut(s) 543
HaeII RGCGCY 1 cut(s) 566
HaeIII GGCC 3 cut(s) 234, 382, 659
HhaI GCGC 3 cut(s) 275, 565, 960
Hin1II CATG 3 cut(s) 239, 334, 698
Hin6I GCGC 3 cut(s) 273, 563, 958
HinP1I GCGC 3 cut(s) 273, 563, 958
HinfI GANTC 5 cut(s) 77, 304, 326, 353, 1034
Hpy166II GTNNAC 1 cut(s) 724
Hpy188I TCNGA 8 cut(s) 87, 212, 352, 522, 537, 691, 703, 874
Hpy188III TCNNGA 1 cut(s) 793
Hpy8I GTNNAC 1 cut(s) 724
HpyAV CCTTC 1 cut(s) 155
HpyCH4III ACNGT 5 cut(s) 281, 342, 347, 472, 728
HpyCH4IV ACGT 2 cut(s) 261, 412
HpyCH4V TGCA 7 cut(s) 312, 464, 487, 505, 698, 995, 1007
HpyF3I CTNAG 4 cut(s) 209, 306, 519, 764
HpySE526I ACGT 2 cut(s) 261, 412
Hsp92II CATG 3 cut(s) 239, 334, 698
HspAI GCGC 3 cut(s) 273, 563, 958
KpnI GGTACC 1 cut(s) 346
Ksp22I TGATCA 1 cut(s) 646
Kzo9I GATC 7 cut(s) 89, 400, 632, 646, 691, 869, 949
LmnI GCTCC 3 cut(s) 547, 562, 598
LweI GCATC 3 cut(s) 514, 528, 707
MaeI CTAG 1 cut(s) 393
MaeII ACGT 2 cut(s) 261, 412
MaeIII GTNAC 3 cut(s) 131, 408, 749
MalI GATC 7 cut(s) 91, 402, 634, 648, 693, 871, 951
MboI GATC 7 cut(s) 89, 400, 632, 646, 691, 869, 949
MboII GAAGA 5 cut(s) 257, 346, 677, 793, 1029
MflI RGATCY 2 cut(s) 632, 949
MhlI GDGCHC 1 cut(s) 208
MlsI TGGCCA 1 cut(s) 659
MluCI AATT 6 cut(s) 46, 71, 622, 683, 966, 1047
MluNI TGGCCA 1 cut(s) 659
MlyI GAGTC 3 cut(s) 86, 298, 335
MmeI TCCRAC 1 cut(s) 966
Mox20I TGGCCA 1 cut(s) 659
Mph1103I ATGCAT 1 cut(s) 700
MscI TGGCCA 1 cut(s) 659
MseI TTAA 2 cut(s) 1043, 1060
Msp20I TGGCCA 1 cut(s) 659
MspA1I CMGCKG 4 cut(s) 126, 443, 449, 458
MspR9I CCNGG 1 cut(s) 379
MvaI CCWGG 1 cut(s) 379
MvnI CGCG 1 cut(s) 273
NdeII GATC 7 cut(s) 89, 400, 632, 646, 691, 869, 949
NlaIII CATG 3 cut(s) 239, 334, 698
NlaIV GGNNCC 4 cut(s) 344, 549, 558, 634
NmeAIII GCCGAG 2 cut(s) 96, 946
NmuCI GTSAC 2 cut(s) 131, 749
NsiI ATGCAT 1 cut(s) 700
PaqCI CACCTGC 1 cut(s) 1004
PfeI GAWTC 2 cut(s) 353, 1034
PleI GAGTC 3 cut(s) 85, 298, 334
PmaCI CACGTG 1 cut(s) 262
PmlI CACGTG 1 cut(s) 262
PpsI GAGTC 3 cut(s) 85, 298, 334
Ppu21I YACGTR 2 cut(s) 262, 413
Psp6I CCWGG 1 cut(s) 377
PspCI CACGTG 1 cut(s) 262
PspGI CCWGG 1 cut(s) 377
PspN4I GGNNCC 4 cut(s) 344, 549, 558, 634
PspPI GGNCC 1 cut(s) 768
PstI CTGCAG 2 cut(s) 466, 489
PstNI CAGNNNCTG 2 cut(s) 452, 470
PsuI RGATCY 2 cut(s) 632, 949
PvuII CAGCTG 1 cut(s) 449
RsaI GTAC 3 cut(s) 283, 344, 474
RsaNI GTAC 3 cut(s) 282, 343, 473
SaqAI TTAA 2 cut(s) 1043, 1060
Sau3AI GATC 7 cut(s) 89, 400, 632, 646, 691, 869, 949
Sau96I GGNCC 1 cut(s) 768
SchI GAGTC 3 cut(s) 86, 298, 335
ScrFI CCNGG 1 cut(s) 379
SduI GDGCHC 1 cut(s) 208
SfaNI GCATC 3 cut(s) 514, 528, 707
SfcI CTRYAG 2 cut(s) 462, 485
SinI GGWCC 1 cut(s) 768
SmlI CTYRAG 1 cut(s) 953
SmoI CTYRAG 1 cut(s) 953
Sse9I AATT 6 cut(s) 46, 71, 622, 683, 966, 1047
SspMI CTAG 1 cut(s) 393
StyD4I CCNGG 1 cut(s) 377
StyI CCWWGG 3 cut(s) 66, 392, 660
TaaI ACNGT 5 cut(s) 281, 342, 347, 472, 728
TaiI ACGT 2 cut(s) 264, 415
TaqI TCGA 1 cut(s) 792
TasI AATT 6 cut(s) 46, 71, 622, 683, 966, 1047
TauI GCSGC 6 cut(s) 123, 129, 446, 458, 577, 808
TfiI GAWTC 2 cut(s) 353, 1034
Tru1I TTAA 2 cut(s) 1043, 1060
Tru9I TTAA 2 cut(s) 1043, 1060
TscAI CASTG 5 cut(s) 136, 314, 367, 424, 507
TseFI GTSAC 2 cut(s) 131, 749
Tsp45I GTSAC 2 cut(s) 131, 749
TspDTI ATGAA 5 cut(s) 347, 363, 695, 794, 1029
TspRI CASTG 5 cut(s) 136, 314, 367, 424, 507
VpaK11BI GGWCC 1 cut(s) 768
XapI RAATTY 1 cut(s) 622
XcmI CCANNNNNNNNNTGG 1 cut(s) 626
XmaJI CCTAGG 1 cut(s) 392
XmiI GTMKAC 1 cut(s) 723
XspI CTAG 1 cut(s) 393
Zsp2I ATGCAT 1 cut(s) 700
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.