Rw1G005750
MYB Family

Myb/SANT-like DNA-binding domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr1
OG0013444
Physical Location & Seq
Forward (+)
11605770 .. 11608484
2715 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw1G005750.1

Sequence Viewer

Length: 1020 bp
ATGGAGAAAGAGGGTAACCAGGATCAAAACCCATCTCTCCTCTCTAACAATTTGGAGTCTCCAAGATCAAAACCCTTGATTGGTAGTGACAGGCTGAAGAGAGATGAGTGGAGTGAAGGAGCTGTGTCTAGTCTTCTGGAGGCTTATGAGGCCAAATGGGTTCTCAGAAACAGAGCCAAGCTCAAGGGCCATGACTGGGAAGATGTAGCCAGACACGTCTCGTCGCGTGCCAGCTGCTCCAAGTCCCCCAAGACTCAGACGCAGTGCAAGAACAAGATTGAGTCCATGAAGAAACGCTACCGTTCCGAGTCGGCCACGGCTGATGGCTCATCTTGGCCTCTGTATCCAAGACTTGATCTTTTGTTGCGTGGCAGCGGACCACCTCCACCCACAGCAGCAGCAGCAGCAACTGTTGTAGCAGCTGTAGCTACTTCACCGGCACCGCCGCAACAACCACCGCTATCGGCTCCTCTGGCTCATCATAGCAACCACGCTCTGATGCTATTGGAGCCATCAGTGCCGGTGTCATCGCCGCCTCAACCACCGCCTCCACAGCCACCTCCGCCACATTTAGAAACTGCCCAAAATTCATACGGGTCCGATGGTGTTGATAGGGATGCCAAGGAAGATGGAGTGGGGATGAAATTATCAGACCATGCATCAGACAAGAACCCATTGGAGATAGACAGTAGCACACCAGCCCTTTATAGTGATAAGGAAAAGTTAAGGTCCAAGAGAATGAAGAGGAAAATCGAGAAGAAGACGCGAAGAAGAAGGGAGGAATTAGAGATAGCCGAGAGCATAAGATGGTTAGCCGAGGTTGTGGTAAGATCCGAGCAATCACGAATGGACACAATGAGAGACATAGAGAGGATGAGAGTTGAAGCGGAGGCCAAGAGAGGAGAGATGGATCTGAAGCGCACAGAAATTATTGCCAATACCCAGTTGGAGATTGCAAGGATCTTTGCTGCTGGTGTTGGCAAAGGTGTTGATTCTTCACTAAGAATTGGAAGAAGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-bind_4

Protein Analysis

339

Amino Acids

37.54

Weight (kDa)

9.36

Isoelectric Point (pI)

64.79

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-bind_4 PF13837 34 - 120 2.9e-16 Myb/SANT-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013444)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G54390 AT3G54390
fragaria_vesca FvH4_7g03380
malus_domestica MD02G1283400.v1.1 MD07G1048900.v1.1
prunus_persica Prupe.2G039000_v2.0.a1
pyrus_communis pycom02g24150 pycom07g03550
rosa_chinensis RchiOBHm_Chr1g0325721
rosa_laevigata RLG00000030111
rosa_multiflora Rmu_sc0000703.1_g000004
rosa_roxburghii Rroxscaffold_4G00324450
rosa_rugosa Rorug01G0053900
rosa_samantha Rh1AG069600 Rh1BG056900 Rh1CG070100 Rh1DG074700
rosa_wichuraiana Rw1G005750

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 439
AccII CGCG 2 cut(s) 226, 766
AciI CCGC 8 cut(s) 375, 443, 446, 458, 533, 545, 563, 887
AclWI GGATC 4 cut(s) 30, 825, 918, 968
AcoI YGGCCR 1 cut(s) 312
AcsI RAATTY 1 cut(s) 586
AcuI CTGAAG 2 cut(s) 116, 935
AfiI CCNNNNNNNGG 2 cut(s) 80, 196
AflIII ACRYGT 1 cut(s) 214
AgsI TTSAA 1 cut(s) 884
AjiI CACGTC 1 cut(s) 217
AjnI CCWGG 1 cut(s) 18
AluBI AGCT 5 cut(s) 122, 181, 234, 422, 428
AluI AGCT 5 cut(s) 122, 181, 234, 422, 428
Alw26I GTCTC 3 cut(s) 63, 223, 855
AlwI GGATC 4 cut(s) 30, 825, 918, 968
AlwNI CAGNNNCTG 1 cut(s) 410
AoxI GGCC 5 cut(s) 150, 187, 312, 335, 891
ApeKI GCWGC 8 cut(s) 234, 372, 395, 398, 401, 404, 419, 968
ApoI RAATTY 1 cut(s) 586
AspLEI GCGC 1 cut(s) 921
AspS9I GGNCC 4 cut(s) 187, 377, 597, 729
AsuHPI GGTGA 1 cut(s) 426
AvaII GGWCC 3 cut(s) 377, 597, 729
BanI GGYRCC 1 cut(s) 439
BarI GAAGNNNNNNTAC 2 cut(s) 281, 313
BbsI GAAGAC 2 cut(s) 125, 767
BbvI GCAGC 8 cut(s) 221, 384, 407, 410, 413, 416, 431, 955
BccI CCATC 7 cut(s) 40, 317, 520, 596, 623, 801, 901
BceAI ACGGC 1 cut(s) 333
BciT130I CCWGG 1 cut(s) 20
BciVI GTATCC 1 cut(s) 354
BcoDI GTCTC 3 cut(s) 63, 223, 855
BfaI CTAG 1 cut(s) 129
BfmI CTRYAG 1 cut(s) 423
BfuI GTATCC 1 cut(s) 354
Bme1390I CCNGG 1 cut(s) 20
Bme18I GGWCC 3 cut(s) 377, 597, 729
BmgBI CACGTC 1 cut(s) 217
BmgT120I GGNCC 4 cut(s) 187, 377, 597, 729
BmiI GGNNCC 4 cut(s) 441, 468, 510, 598
BmrFI CCNGG 1 cut(s) 20
BmrI ACTGGG 2 cut(s) 205, 937
BmsI GCATC 3 cut(s) 489, 607, 668
BmuI ACTGGG 2 cut(s) 205, 937
BpiI GAAGAC 2 cut(s) 125, 767
BplI GAGNNNNNCTC 2 cut(s) 165, 197
BpmI CTGGAG 1 cut(s) 158
BpuEI CTTGAG 1 cut(s) 167
BsaJI CCNNGG 3 cut(s) 315, 621, 816
Bsc4I CCNNNNNNNGG 2 cut(s) 80, 196
Bse118I RCCGGY 2 cut(s) 436, 520
Bse1I ACTGG 2 cut(s) 200, 943
BseBI CCWGG 1 cut(s) 20
BseDI CCNNGG 3 cut(s) 315, 621, 816
BseGI GGATG 3 cut(s) 622, 645, 879
BseLI CCNNNNNNNGG 2 cut(s) 80, 196
BseMII CTCAG 2 cut(s) 178, 269
BseNI ACTGG 2 cut(s) 200, 943
BseRI GAGGAG 3 cut(s) 29, 459, 915
BseXI GCAGC 8 cut(s) 221, 384, 407, 410, 413, 416, 431, 955
Bsh1236I CGCG 2 cut(s) 226, 766
BshFI GGCC 5 cut(s) 152, 189, 314, 337, 893
BshNI GGYRCC 1 cut(s) 439
BsiSI CCGG 2 cut(s) 437, 521
BslFI GGGAC 1 cut(s) 229
BslI CCNNNNNNNGG 2 cut(s) 80, 196
BsmAI GTCTC 3 cut(s) 63, 223, 855
BsmBI CGTCTC 1 cut(s) 223
BsmFI GGGAC 1 cut(s) 229
BsnI GGCC 5 cut(s) 152, 189, 314, 337, 893
Bsp143I GATC 6 cut(s) 22, 65, 355, 830, 910, 960
BspACI CCGC 8 cut(s) 375, 443, 446, 458, 533, 545, 563, 887
BspANI GGCC 5 cut(s) 152, 189, 314, 337, 893
BspCNI CTCAG 2 cut(s) 177, 268
BspFNI CGCG 2 cut(s) 226, 766
BspLI GGNNCC 4 cut(s) 441, 468, 510, 598
BspPI GGATC 4 cut(s) 30, 825, 918, 968
BspT107I GGYRCC 1 cut(s) 439
BsrFI RCCGGY 2 cut(s) 436, 520
BsrI ACTGG 2 cut(s) 200, 943
BssAI RCCGGY 2 cut(s) 436, 520
BssECI CCNNGG 3 cut(s) 315, 621, 816
BssMI GATC 6 cut(s) 22, 65, 355, 830, 910, 960
BssT1I CCWWGG 1 cut(s) 621
Bst2UI CCWGG 1 cut(s) 20
Bst4CI ACNGT 3 cut(s) 302, 412, 689
Bst6I CTCTTC 2 cut(s) 92, 737
BstC8I GCNNGC 2 cut(s) 228, 232
BstDEI CTNAG 3 cut(s) 164, 255, 1001
BstDSI CCRYGG 1 cut(s) 315
BstEII GGTNACC 1 cut(s) 14
BstF5I GGATG 3 cut(s) 622, 645, 879
BstFNI CGCG 2 cut(s) 226, 766
BstHHI GCGC 1 cut(s) 921
BstKTI GATC 6 cut(s) 25, 68, 358, 833, 913, 963
BstMAI GTCTC 3 cut(s) 63, 223, 855
BstMBI GATC 6 cut(s) 22, 65, 355, 830, 910, 960
BstMWI GCNNNNNNNGC 9 cut(s) 149, 401, 404, 425, 473, 508, 517, 553, 562
BstNI CCWGG 1 cut(s) 20
BstPI GGTNACC 1 cut(s) 14
BstSCI CCNGG 1 cut(s) 18
BstSFI CTRYAG 1 cut(s) 423
BstUI CGCG 2 cut(s) 226, 766
BstV1I GCAGC 8 cut(s) 221, 384, 407, 410, 413, 416, 431, 955
BstV2I GAAGAC 2 cut(s) 125, 767
BstX2I RGATCY 3 cut(s) 830, 910, 960
BstYI RGATCY 3 cut(s) 830, 910, 960
BsuI GTATCC 1 cut(s) 354
BsuRI GGCC 5 cut(s) 152, 189, 314, 337, 893
BtgI CCRYGG 1 cut(s) 315
BtgZI GCGATG 1 cut(s) 513
BtrI CACGTC 1 cut(s) 217
BtsCI GGATG 3 cut(s) 622, 645, 879
BtsI GCAGTG 1 cut(s) 269
BtsIMutI CAGTG 2 cut(s) 269, 522
Cac8I GCNNGC 2 cut(s) 228, 232
CaiI CAGNNNCTG 1 cut(s) 410
CfoI GCGC 1 cut(s) 921
Cfr10I RCCGGY 2 cut(s) 436, 520
Cfr13I GGNCC 4 cut(s) 187, 377, 597, 729
CseI GACGC 2 cut(s) 268, 772
CviAII CATG 3 cut(s) 191, 286, 656
DdeI CTNAG 3 cut(s) 164, 255, 1001
DpnI GATC 6 cut(s) 24, 67, 357, 832, 912, 962
DpnII GATC 6 cut(s) 22, 65, 355, 830, 910, 960
EaeI YGGCCR 1 cut(s) 312
Eam1104I CTCTTC 2 cut(s) 92, 737
EarI CTCTTC 2 cut(s) 92, 737
EciI GGCGGA 1 cut(s) 552
Eco130I CCWWGG 1 cut(s) 621
Eco47I GGWCC 3 cut(s) 377, 597, 729
Eco57I CTGAAG 2 cut(s) 116, 935
Eco91I GGTNACC 1 cut(s) 14
EcoO65I GGTNACC 1 cut(s) 14
EcoRII CCWGG 1 cut(s) 18
EcoT14I CCWWGG 1 cut(s) 621
EcoT22I ATGCAT 1 cut(s) 661
ErhI CCWWGG 1 cut(s) 621
Esp3I CGTCTC 1 cut(s) 223
FaeI CATG 3 cut(s) 194, 289, 659
FaiI YATR 9 cut(s) 147, 192, 287, 483, 592, 657, 708, 803, 866
FaqI GGGAC 1 cut(s) 229
FatI CATG 3 cut(s) 190, 285, 655
FokI GGATG 3 cut(s) 629, 652, 886
FspBI CTAG 1 cut(s) 129
GlaI GCGC 1 cut(s) 920
GsuI CTGGAG 1 cut(s) 158
HaeIII GGCC 5 cut(s) 152, 189, 314, 337, 893
HapII CCGG 2 cut(s) 437, 521
HgaI GACGC 2 cut(s) 268, 772
HhaI GCGC 1 cut(s) 921
Hin1II CATG 3 cut(s) 194, 289, 659
Hin6I GCGC 1 cut(s) 919
HinP1I GCGC 1 cut(s) 919
HinfI GANTC 5 cut(s) 56, 253, 281, 308, 992
HpaII CCGG 2 cut(s) 437, 521
HphI GGTGA 1 cut(s) 426
Hpy188I TCNGA 9 cut(s) 167, 258, 307, 498, 601, 652, 664, 835, 915
Hpy188III TCNNGA 3 cut(s) 137, 754, 843
Hpy99I CGWCG 1 cut(s) 226
HpyAV CCTTC 2 cut(s) 110, 768
HpyCH4III ACNGT 3 cut(s) 302, 412, 689
HpyCH4IV ACGT 1 cut(s) 216
HpyCH4V TGCA 3 cut(s) 267, 659, 956
HpyF10VI GCNNNNNNNGC 9 cut(s) 149, 401, 404, 425, 473, 508, 517, 553, 562
HpyF3I CTNAG 3 cut(s) 164, 255, 1001
HpySE526I ACGT 1 cut(s) 216
Hsp92II CATG 3 cut(s) 194, 289, 659
HspAI GCGC 1 cut(s) 919
Kzo9I GATC 6 cut(s) 22, 65, 355, 830, 910, 960
LmnI GCTCC 4 cut(s) 119, 242, 472, 508
Lsp1109I GCAGC 8 cut(s) 221, 384, 407, 410, 413, 416, 431, 955
LweI GCATC 3 cut(s) 489, 607, 668
MaeI CTAG 1 cut(s) 129
MaeII ACGT 1 cut(s) 216
MaeIII GTNAC 2 cut(s) 14, 86
MalI GATC 6 cut(s) 24, 67, 357, 832, 912, 962
MboI GATC 6 cut(s) 22, 65, 355, 830, 910, 960
MflI RGATCY 3 cut(s) 830, 910, 960
MluCI AATT 6 cut(s) 49, 586, 644, 782, 927, 1005
MlyI GAGTC 4 cut(s) 65, 247, 290, 317
MmeI TCCRAC 1 cut(s) 927
Mph1103I ATGCAT 1 cut(s) 661
MseI TTAA 2 cut(s) 725, 1018
MspA1I CMGCKG 3 cut(s) 234, 375, 422
MspI CCGG 2 cut(s) 437, 521
MspR9I CCNGG 1 cut(s) 20
MvaI CCWGG 1 cut(s) 20
MvnI CGCG 2 cut(s) 226, 766
MwoI GCNNNNNNNGC 9 cut(s) 149, 401, 404, 425, 473, 508, 517, 553, 562
NdeII GATC 6 cut(s) 22, 65, 355, 830, 910, 960
NlaIII CATG 3 cut(s) 194, 289, 659
NlaIV GGNNCC 4 cut(s) 441, 468, 510, 598
NmeAIII GCCGAG 2 cut(s) 820, 841
NmuCI GTSAC 1 cut(s) 86
NsiI ATGCAT 1 cut(s) 661
PfeI GAWTC 1 cut(s) 992
PleI GAGTC 4 cut(s) 64, 247, 289, 316
PpsI GAGTC 4 cut(s) 64, 247, 289, 316
Psp6I CCWGG 1 cut(s) 18
PspEI GGTNACC 1 cut(s) 14
PspGI CCWGG 1 cut(s) 18
PspN4I GGNNCC 4 cut(s) 441, 468, 510, 598
PspPI GGNCC 4 cut(s) 187, 377, 597, 729
PstNI CAGNNNCTG 1 cut(s) 410
PsuI RGATCY 3 cut(s) 830, 910, 960
PvuII CAGCTG 2 cut(s) 234, 422
SaqAI TTAA 2 cut(s) 725, 1018
Sau3AI GATC 6 cut(s) 22, 65, 355, 830, 910, 960
Sau96I GGNCC 4 cut(s) 187, 377, 597, 729
SchI GAGTC 4 cut(s) 65, 247, 290, 317
ScrFI CCNGG 1 cut(s) 20
SfaNI GCATC 3 cut(s) 489, 607, 668
SfcI CTRYAG 1 cut(s) 423
SinI GGWCC 3 cut(s) 377, 597, 729
SmlI CTYRAG 1 cut(s) 182
SmoI CTYRAG 1 cut(s) 182
Sse9I AATT 6 cut(s) 49, 586, 644, 782, 927, 1005
SsiI CCGC 8 cut(s) 375, 443, 446, 458, 533, 545, 563, 887
SspMI CTAG 1 cut(s) 129
StyD4I CCNGG 1 cut(s) 18
StyI CCWWGG 1 cut(s) 621
TaaI ACNGT 3 cut(s) 302, 412, 689
TaiI ACGT 1 cut(s) 219
TaqI TCGA 1 cut(s) 753
TasI AATT 6 cut(s) 49, 586, 644, 782, 927, 1005
TauI GCSGC 2 cut(s) 448, 535
TfiI GAWTC 1 cut(s) 992
Tru1I TTAA 2 cut(s) 725, 1018
Tru9I TTAA 2 cut(s) 725, 1018
TscAI CASTG 2 cut(s) 269, 522
TseFI GTSAC 1 cut(s) 86
TseI GCWGC 8 cut(s) 234, 372, 395, 398, 401, 404, 419, 968
Tsp45I GTSAC 1 cut(s) 86
TspDTI ATGAA 4 cut(s) 302, 579, 656, 755
TspRI CASTG 2 cut(s) 269, 522
VpaK11BI GGWCC 3 cut(s) 377, 597, 729
XapI RAATTY 1 cut(s) 586
XcmI CCANNNNNNNNNTGG 1 cut(s) 943
XspI CTAG 1 cut(s) 129
Zsp2I ATGCAT 1 cut(s) 661
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.