FvH4_7g03380
MYB Family

Myb/SANT-like DNA-binding domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
OG0013444
Physical Location & Seq
Forward (+)
3720565 .. 3722958
2394 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g03380.t1

Sequence Viewer

Length: 1005 bp
ATGGAGAAAGAGGGTAACCAGGATCAAACCCCATCTCTCCTCTCTAACAATTTGGAGTCTCCAAGATCAAAGCCTTTGATTGGTAGTGACAGGCTGAAGAGAGATGAGTGGAGTGAAGGAGCTGTGTCTAGTCTTCTGGAGGCTTATGAGGCCAAATGGGTCCTCAGAAACAGAGCCAAACTCAAAGGCCATGACTGGGAAGATGTTGCCCGACATGTCTCGTCGCGTGGGGGCTGCTCCAAGTCGCCCAAGACTCAGACGCAGTGCAAGAACAAGATCGAGTCCATGAAGAAACGCTACCGCTCTGAGTCGGCCACCGCTGATGGCTCATCTTGGCCTCTTTATCCACGACTTGATCTTTTGCTGCGTGGCAGCGGACCACCTCCACCCACAGCAGCAGCAGCAACTGTTGTAGCAGCTGTAGCTCCACCAGCGCCTCCGCATCAACCACCGCTAGTGACTCATCAGAGCAACCACGCCCTGATGCTATTGGAGCCATCAGTGCCGGTGTCACCGCCGACTCAACCGGCGCTTCCACCGCCACCTCCTCCGCATTTAGGAACTGCACAGAATTCATTCGGGTCTGATGGTGTTGATAGGGATGCCAAGGAAGAAGAAGCGGGGATGAAATTATCAGACCATGCATCGGACAAGAACCCATTGGAGATAGACAGTAGCACACCAGCCCTTTATAGTGATAAGGAGAAGTTAAGGTCCAAGAGAATGAAGAGGAAAATCGAGAAGAAGACACGAAGAAGAAGGGAGGAATTAGAGATAGCCGAGAGTATAAGATGGTTAGCTGAGGTTGTGGTAAGATCTGAGCAATCAAGAATGGACACAATGAGAGAGATAGAGAGGATGAGAGTTGAAGCAGAGGCAAAGAGAGGAGAGATGGATCTGAAGCGAACAGAAATTATTGCCAATACACAGTTGGAGATTGCAAGGATCTTTGCTGCTGGTGCCGGCAAAGGCGTTGATTCTTCATTAAGAATTGGAAGAAGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-bind_4

Protein Analysis

335

Amino Acids

37.01

Weight (kDa)

9.37

Isoelectric Point (pI)

64.51

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-bind_4 PF13837 34 - 120 1.1e-16 Myb/SANT-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013444)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G54390 AT3G54390
fragaria_vesca FvH4_7g03380
malus_domestica MD02G1283400.v1.1 MD07G1048900.v1.1
prunus_persica Prupe.2G039000_v2.0.a1
pyrus_communis pycom02g24150 pycom07g03550
rosa_chinensis RchiOBHm_Chr1g0325721
rosa_laevigata RLG00000030111
rosa_multiflora Rmu_sc0000703.1_g000004
rosa_roxburghii Rroxscaffold_4G00324450
rosa_rugosa Rorug01G0053900
rosa_samantha Rh1AG069600 Rh1BG056900 Rh1CG070100 Rh1DG074700
rosa_wichuraiana Rw1G005750

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 959
AccBSI CCGCTC 1 cut(s) 303
AccII CGCG 1 cut(s) 226
AciI CCGC 9 cut(s) 301, 318, 375, 440, 452, 515, 539, 551, 620
AclWI GGATC 3 cut(s) 30, 903, 953
AcoI YGGCCR 1 cut(s) 312
AcsI RAATTY 1 cut(s) 571
AcuI CTGAAG 2 cut(s) 116, 920
AfiI CCNNNNNNNGG 4 cut(s) 80, 196, 557, 646
AflIII ACRYGT 1 cut(s) 214
AgsI TTSAA 1 cut(s) 869
AjnI CCWGG 1 cut(s) 18
AluBI AGCT 4 cut(s) 122, 419, 425, 800
AluI AGCT 4 cut(s) 122, 419, 425, 800
Alw26I GTCTC 2 cut(s) 63, 223
AlwI GGATC 3 cut(s) 30, 903, 953
AlwNI CAGNNNCTG 1 cut(s) 407
AoxI GGCC 4 cut(s) 150, 187, 312, 335
ApeKI GCWGC 8 cut(s) 234, 364, 372, 395, 398, 401, 416, 953
ApoI RAATTY 1 cut(s) 571
Asp700I GAANNNNTTC 1 cut(s) 575
AspLEI GCGC 2 cut(s) 436, 532
AspS9I GGNCC 3 cut(s) 160, 377, 714
AsuHPI GGTGA 1 cut(s) 504
AvaII GGWCC 3 cut(s) 160, 377, 714
BanI GGYRCC 1 cut(s) 959
BarI GAAGNNNNNNTAC 2 cut(s) 281, 313
BbsI GAAGAC 2 cut(s) 125, 752
BbvCI CCTCAGC 1 cut(s) 801
BbvI GCAGC 8 cut(s) 221, 351, 384, 407, 410, 413, 428, 940
BccI CCATC 6 cut(s) 40, 317, 505, 581, 786, 886
BciT130I CCWGG 1 cut(s) 20
BcoDI GTCTC 2 cut(s) 63, 223
BfaI CTAG 2 cut(s) 129, 455
BfmI CTRYAG 1 cut(s) 420
BfoI RGCGCY 2 cut(s) 437, 533
BglII AGATCT 1 cut(s) 815
BisI GCNGC 8 cut(s) 235, 365, 373, 396, 399, 402, 417, 954
BlsI GCNGC 8 cut(s) 236, 366, 374, 397, 400, 403, 418, 955
Bme1390I CCNGG 1 cut(s) 20
Bme18I GGWCC 3 cut(s) 160, 377, 714
BmgT120I GGNCC 3 cut(s) 160, 377, 714
BmiI GGNNCC 3 cut(s) 161, 495, 961
BmrFI CCNGG 1 cut(s) 20
BmrI ACTGGG 1 cut(s) 205
BmsI GCATC 4 cut(s) 451, 474, 592, 653
BmuI ACTGGG 1 cut(s) 205
BpiI GAAGAC 2 cut(s) 125, 752
BplI GAGNNNNNCTC 2 cut(s) 165, 197
BpmI CTGGAG 1 cut(s) 158
Bpu10I CCTNAGC 1 cut(s) 801
BsaJI CCNNGG 1 cut(s) 606
Bsc4I CCNNNNNNNGG 4 cut(s) 80, 196, 557, 646
Bse118I RCCGGY 3 cut(s) 505, 526, 962
Bse1I ACTGG 1 cut(s) 200
BseBI CCWGG 1 cut(s) 20
BseDI CCNNGG 1 cut(s) 606
BseGI GGATG 3 cut(s) 607, 630, 864
BseLI CCNNNNNNNGG 4 cut(s) 80, 196, 557, 646
BseMII CTCAG 5 cut(s) 178, 269, 297, 792, 810
BseNI ACTGG 1 cut(s) 200
BseRI GAGGAG 3 cut(s) 29, 537, 900
BseXI GCAGC 8 cut(s) 221, 351, 384, 407, 410, 413, 428, 940
BsgI GTGCAG 1 cut(s) 549
Bsh1236I CGCG 1 cut(s) 226
BshFI GGCC 4 cut(s) 152, 189, 314, 337
BshNI GGYRCC 1 cut(s) 959
BsiSI CCGG 3 cut(s) 506, 527, 963
BslI CCNNNNNNNGG 4 cut(s) 80, 196, 557, 646
BsmAI GTCTC 2 cut(s) 63, 223
BsnI GGCC 4 cut(s) 152, 189, 314, 337
Bsp143I GATC 7 cut(s) 22, 65, 276, 355, 815, 895, 945
BspACI CCGC 9 cut(s) 301, 318, 375, 440, 452, 515, 539, 551, 620
BspANI GGCC 4 cut(s) 152, 189, 314, 337
BspCNI CTCAG 5 cut(s) 177, 268, 298, 793, 811
BspFNI CGCG 1 cut(s) 226
BspLI GGNNCC 3 cut(s) 161, 495, 961
BspPI GGATC 3 cut(s) 30, 903, 953
BspT107I GGYRCC 1 cut(s) 959
BsrBI CCGCTC 1 cut(s) 303
BsrFI RCCGGY 3 cut(s) 505, 526, 962
BsrI ACTGG 1 cut(s) 200
BssAI RCCGGY 3 cut(s) 505, 526, 962
BssECI CCNNGG 1 cut(s) 606
BssMI GATC 7 cut(s) 22, 65, 276, 355, 815, 895, 945
BssT1I CCWWGG 1 cut(s) 606
Bst2UI CCWGG 1 cut(s) 20
Bst4CI ACNGT 3 cut(s) 409, 674, 930
Bst6I CTCTTC 2 cut(s) 92, 722
BstC8I GCNNGC 1 cut(s) 964
BstDEI CTNAG 5 cut(s) 164, 255, 306, 801, 819
BstEII GGTNACC 1 cut(s) 14
BstF5I GGATG 3 cut(s) 607, 630, 864
BstFNI CGCG 1 cut(s) 226
BstH2I RGCGCY 2 cut(s) 437, 533
BstHHI GCGC 2 cut(s) 436, 532
BstKTI GATC 7 cut(s) 25, 68, 279, 358, 818, 898, 948
BstMAI GTCTC 2 cut(s) 63, 223
BstMBI GATC 7 cut(s) 22, 65, 276, 355, 815, 895, 945
BstMWI GCNNNNNNNGC 8 cut(s) 149, 401, 422, 431, 493, 502, 538, 959
BstNI CCWGG 1 cut(s) 20
BstNSI RCATGY 1 cut(s) 218
BstPI GGTNACC 1 cut(s) 14
BstSCI CCNGG 1 cut(s) 18
BstSFI CTRYAG 1 cut(s) 420
BstUI CGCG 1 cut(s) 226
BstV1I GCAGC 8 cut(s) 221, 351, 384, 407, 410, 413, 428, 940
BstV2I GAAGAC 2 cut(s) 125, 752
BstX2I RGATCY 3 cut(s) 815, 895, 945
BstYI RGATCY 3 cut(s) 815, 895, 945
BsuRI GGCC 4 cut(s) 152, 189, 314, 337
BtsCI GGATG 3 cut(s) 607, 630, 864
BtsI GCAGTG 1 cut(s) 269
BtsIMutI CAGTG 2 cut(s) 269, 507
Cac8I GCNNGC 1 cut(s) 964
CaiI CAGNNNCTG 1 cut(s) 407
CfoI GCGC 2 cut(s) 436, 532
Cfr10I RCCGGY 3 cut(s) 505, 526, 962
Cfr13I GGNCC 3 cut(s) 160, 377, 714
CseI GACGC 1 cut(s) 268
CviAII CATG 4 cut(s) 191, 215, 286, 641
DdeI CTNAG 5 cut(s) 164, 255, 306, 801, 819
DpnI GATC 7 cut(s) 24, 67, 278, 357, 817, 897, 947
DpnII GATC 7 cut(s) 22, 65, 276, 355, 815, 895, 945
EaeI YGGCCR 1 cut(s) 312
Eam1104I CTCTTC 2 cut(s) 92, 722
EarI CTCTTC 2 cut(s) 92, 722
Eco130I CCWWGG 1 cut(s) 606
Eco47I GGWCC 3 cut(s) 160, 377, 714
Eco57I CTGAAG 2 cut(s) 116, 920
Eco91I GGTNACC 1 cut(s) 14
EcoO109I RGGNCCY 1 cut(s) 160
EcoO65I GGTNACC 1 cut(s) 14
EcoRI GAATTC 1 cut(s) 571
EcoRII CCWGG 1 cut(s) 18
EcoT14I CCWWGG 1 cut(s) 606
EcoT22I ATGCAT 1 cut(s) 646
ErhI CCWWGG 1 cut(s) 606
FaeI CATG 4 cut(s) 194, 218, 289, 644
FaiI YATR 7 cut(s) 147, 192, 216, 287, 642, 693, 788
FatI CATG 4 cut(s) 190, 214, 285, 640
FauI CCCGC 1 cut(s) 613
Fnu4HI GCNGC 8 cut(s) 235, 365, 373, 396, 399, 402, 417, 954
FokI GGATG 3 cut(s) 614, 637, 871
Fsp4HI GCNGC 8 cut(s) 235, 365, 373, 396, 399, 402, 417, 954
FspBI CTAG 2 cut(s) 129, 455
GlaI GCGC 2 cut(s) 435, 531
GluI GCNGC 8 cut(s) 235, 365, 373, 396, 399, 402, 417, 954
GsuI CTGGAG 1 cut(s) 158
HaeII RGCGCY 2 cut(s) 437, 533
HaeIII GGCC 4 cut(s) 152, 189, 314, 337
HapII CCGG 3 cut(s) 506, 527, 963
HgaI GACGC 1 cut(s) 268
HhaI GCGC 2 cut(s) 436, 532
Hin1II CATG 4 cut(s) 194, 218, 289, 644
Hin6I GCGC 2 cut(s) 434, 530
HinP1I GCGC 2 cut(s) 434, 530
HinfI GANTC 7 cut(s) 56, 253, 281, 308, 460, 520, 977
HpaII CCGG 3 cut(s) 506, 527, 963
HphI GGTGA 1 cut(s) 504
Hpy188I TCNGA 9 cut(s) 167, 258, 307, 468, 586, 637, 649, 820, 900
Hpy188III TCNNGA 3 cut(s) 137, 739, 828
Hpy99I CGWCG 1 cut(s) 226
HpyAV CCTTC 2 cut(s) 110, 753
HpyCH4III ACNGT 3 cut(s) 409, 674, 930
HpyCH4V TGCA 4 cut(s) 267, 566, 644, 941
HpyF10VI GCNNNNNNNGC 8 cut(s) 149, 401, 422, 431, 493, 502, 538, 959
HpyF3I CTNAG 5 cut(s) 164, 255, 306, 801, 819
Hsp92II CATG 4 cut(s) 194, 218, 289, 644
HspAI GCGC 2 cut(s) 434, 530
KroI GCCGGC 1 cut(s) 962
KroNI GCCGGC 1 cut(s) 964
Kzo9I GATC 7 cut(s) 22, 65, 276, 355, 815, 895, 945
LmnI GCTCC 4 cut(s) 119, 242, 430, 493
Lsp1109I GCAGC 8 cut(s) 221, 351, 384, 407, 410, 413, 428, 940
LweI GCATC 4 cut(s) 451, 474, 592, 653
MaeI CTAG 2 cut(s) 129, 455
MaeIII GTNAC 4 cut(s) 14, 86, 457, 510
MalI GATC 7 cut(s) 24, 67, 278, 357, 817, 897, 947
MbiI CCGCTC 1 cut(s) 303
MboI GATC 7 cut(s) 22, 65, 276, 355, 815, 895, 945
MflI RGATCY 3 cut(s) 815, 895, 945
MluCI AATT 6 cut(s) 49, 571, 629, 767, 912, 990
MlyI GAGTC 6 cut(s) 65, 247, 290, 317, 454, 514
MmeI TCCRAC 1 cut(s) 912
Mph1103I ATGCAT 1 cut(s) 646
MroNI GCCGGC 1 cut(s) 962
MroXI GAANNNNTTC 1 cut(s) 575
MseI TTAA 3 cut(s) 710, 986, 1003
MspA1I CMGCKG 3 cut(s) 320, 375, 419
MspI CCGG 3 cut(s) 506, 527, 963
MspR9I CCNGG 1 cut(s) 20
MvaI CCWGG 1 cut(s) 20
MvnI CGCG 1 cut(s) 226
MwoI GCNNNNNNNGC 8 cut(s) 149, 401, 422, 431, 493, 502, 538, 959
NaeI GCCGGC 1 cut(s) 964
NdeII GATC 7 cut(s) 22, 65, 276, 355, 815, 895, 945
NgoMIV GCCGGC 1 cut(s) 962
NlaIII CATG 4 cut(s) 194, 218, 289, 644
NlaIV GGNNCC 3 cut(s) 161, 495, 961
NmeAIII GCCGAG 1 cut(s) 805
NmuCI GTSAC 3 cut(s) 86, 457, 510
NsiI ATGCAT 1 cut(s) 646
NspI RCATGY 1 cut(s) 218
PciI ACATGT 1 cut(s) 214
PdiI GCCGGC 1 cut(s) 964
PdmI GAANNNNTTC 1 cut(s) 575
PfeI GAWTC 1 cut(s) 977
PkrI GCNGC 8 cut(s) 236, 366, 374, 397, 400, 403, 418, 955
PleI GAGTC 6 cut(s) 64, 247, 289, 316, 454, 514
PpsI GAGTC 6 cut(s) 64, 247, 289, 316, 454, 514
PpuMI RGGWCCY 1 cut(s) 160
PscI ACATGT 1 cut(s) 214
Psp5II RGGWCCY 1 cut(s) 160
Psp6I CCWGG 1 cut(s) 18
PspEI GGTNACC 1 cut(s) 14
PspGI CCWGG 1 cut(s) 18
PspN4I GGNNCC 3 cut(s) 161, 495, 961
PspPI GGNCC 3 cut(s) 160, 377, 714
PspPPI RGGWCCY 1 cut(s) 160
PstNI CAGNNNCTG 1 cut(s) 407
PsuI RGATCY 3 cut(s) 815, 895, 945
PvuII CAGCTG 1 cut(s) 419
SaqAI TTAA 3 cut(s) 710, 986, 1003
SatI GCNGC 8 cut(s) 235, 365, 373, 396, 399, 402, 417, 954
Sau3AI GATC 7 cut(s) 22, 65, 276, 355, 815, 895, 945
Sau96I GGNCC 3 cut(s) 160, 377, 714
SchI GAGTC 6 cut(s) 65, 247, 290, 317, 454, 514
ScrFI CCNGG 1 cut(s) 20
SetI ASST 8 cut(s) 124, 385, 421, 427, 547, 716, 802, 807
SfaNI GCATC 4 cut(s) 451, 474, 592, 653
SfcI CTRYAG 1 cut(s) 420
SinI GGWCC 3 cut(s) 160, 377, 714
Sse9I AATT 6 cut(s) 49, 571, 629, 767, 912, 990
SsiI CCGC 9 cut(s) 301, 318, 375, 440, 452, 515, 539, 551, 620
SspMI CTAG 2 cut(s) 129, 455
StyD4I CCNGG 1 cut(s) 18
StyI CCWWGG 1 cut(s) 606
TaaI ACNGT 3 cut(s) 409, 674, 930
TaqI TCGA 2 cut(s) 279, 738
TasI AATT 6 cut(s) 49, 571, 629, 767, 912, 990
TfiI GAWTC 1 cut(s) 977
Tru1I TTAA 3 cut(s) 710, 986, 1003
Tru9I TTAA 3 cut(s) 710, 986, 1003
TscAI CASTG 2 cut(s) 269, 507
TseFI GTSAC 3 cut(s) 86, 457, 510
TseI GCWGC 8 cut(s) 234, 364, 372, 395, 398, 401, 416, 953
Tsp45I GTSAC 3 cut(s) 86, 457, 510
TspDTI ATGAA 5 cut(s) 302, 564, 641, 740, 972
TspRI CASTG 2 cut(s) 269, 507
VpaK11BI GGWCC 3 cut(s) 160, 377, 714
XapI RAATTY 1 cut(s) 571
XceI RCATGY 1 cut(s) 218
XcmI CCANNNNNNNNNTGG 1 cut(s) 928
XmnI GAANNNNTTC 1 cut(s) 575
XspI CTAG 2 cut(s) 129, 455
Zsp2I ATGCAT 1 cut(s) 646
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.