AT3G56110

May be involved in both secretory and endocytic intracellular trafficking in the endosomal prevacuolar compartments

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0007014
Physical Location & Seq
Reverse (-)
20820135 .. 20823106
2972 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G56110.1

Sequence Viewer

Length: 630 bp
ATGGCAACTCCACCGACGCTACCTGTCACCAATCAGCAAGCTGTTCAATCTCAGCCTCCAATCAACACACCTGCTTTTCGTACTTTCTTCTCACGTCTCTCCACCTCGATCCGTGATGGCTTGTCACAGCGTCGTCCATGGACGGAGCTCATCGATCGTAGTTCCATGGCGAGACCTGAATCTCTCACCGATGCCTTGTCCCGGATAAGGAAGAATCTCGCTTACTTCAAGGTTAACTACGTCGCCATCGTCTCCCTCGTACTCGCCTTTTCGCTTTTCTCTCATCCTCTCTCCCTCCTTGTCCTCATCGGACTCCTAGGCGGTTGGATGTTTCTCTACCTCTTCCGTCCCTCAGATCAGCCACTGGTCGTCTTCGGTCGCACTTTCTCTGATCGAGAGACTCTGCTTGCTCTTGTGCTGTCTACGATCGTCGTCGTGTTTATGACGAGCGTTGGATCTCTCTTAACCTCCGCGCTTATGATTGGTGTTGCAATCGTTTGCGTACACGGTGCGTTTGTGGTTCCGGATGATCTCTTCTTGGACGAGCAAGAGCCTGCGAATGCTGGATTACTCTCATTCCTTGGAGGTTCTGCTACCTCAGCTGCTGCAGCTGTCTCAGGGAGAGTCTAA

Protein Analysis

209

Amino Acids

22.62

Weight (kDa)

9.03

Isoelectric Point (pI)

36.99

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PRA1 PF03208 40 - 183 1.4e-49 PRA1 family protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 79
Acc36I ACCTGC 1 cut(s) 79
AccI GTMKAC 1 cut(s) 422
AccII CGCG 1 cut(s) 473
AccIII TCCGGA 1 cut(s) 523
AciI CCGC 2 cut(s) 321, 471
AclWI GGATC 2 cut(s) 103, 463
AfaI GTAC 3 cut(s) 82, 261, 504
AfiI CCNNNNNNNGG 2 cut(s) 201, 207
AgsI TTSAA 2 cut(s) 47, 229
AjiI CACGTC 1 cut(s) 95
AluBI AGCT 4 cut(s) 41, 148, 602, 611
AluI AGCT 4 cut(s) 41, 148, 602, 611
Alw21I GWGCWC 1 cut(s) 150
Alw26I GTCTC 5 cut(s) 101, 166, 256, 392, 619
AlwI GGATC 2 cut(s) 103, 463
AlwNI CAGNNNCTG 2 cut(s) 364, 605
Aor13HI TCCGGA 1 cut(s) 523
ApeKI GCWGC 3 cut(s) 602, 605, 608
AspA2I CCTAGG 1 cut(s) 316
AspLEI GCGC 1 cut(s) 475
AsuC2I CCSGG 1 cut(s) 202
AsuHPI GGTGA 2 cut(s) 19, 178
AvrII CCTAGG 1 cut(s) 316
BanII GRGCYC 1 cut(s) 150
BbsI GAAGAC 1 cut(s) 364
Bbv12I GWGCWC 1 cut(s) 150
BbvCI CCTCAGC 1 cut(s) 598
BbvI GCAGC 3 cut(s) 589, 592, 620
BccI CCATC 2 cut(s) 110, 254
BcnI CCSGG 1 cut(s) 202
BcoDI GTCTC 5 cut(s) 101, 166, 256, 392, 619
BfaI CTAG 1 cut(s) 317
BfmI CTRYAG 1 cut(s) 606
BfuAI ACCTGC 1 cut(s) 79
BisI GCNGC 3 cut(s) 603, 606, 609
BlnI CCTAGG 1 cut(s) 316
BlsI GCNGC 3 cut(s) 604, 607, 610
Bme1390I CCNGG 1 cut(s) 202
BmgBI CACGTC 1 cut(s) 95
BmiI GGNNCC 1 cut(s) 522
BmrFI CCNGG 1 cut(s) 202
BmsI GCATC 1 cut(s) 181
BpiI GAAGAC 1 cut(s) 364
Bpu10I CCTNAGC 1 cut(s) 598
BpuMI CCSGG 1 cut(s) 202
Bsa29I ATCGAT 1 cut(s) 153
BsaI GGTCTC 1 cut(s) 166
BsaJI CCNNGG 4 cut(s) 137, 165, 316, 580
BsaWI WCCGGW 1 cut(s) 523
Bsc4I CCNNNNNNNGG 2 cut(s) 201, 207
Bse1I ACTGG 1 cut(s) 369
BseAI TCCGGA 1 cut(s) 523
BseCI ATCGAT 1 cut(s) 153
BseDI CCNNGG 4 cut(s) 137, 165, 316, 580
BseGI GGATG 3 cut(s) 283, 333, 532
BseLI CCNNNNNNNGG 2 cut(s) 201, 207
BseMII CTCAG 4 cut(s) 65, 366, 612, 630
BseNI ACTGG 1 cut(s) 369
BseXI GCAGC 3 cut(s) 589, 592, 620
Bsh1236I CGCG 1 cut(s) 473
Bsh1285I CGRYCG 3 cut(s) 157, 379, 429
BshVI ATCGAT 1 cut(s) 153
BsiEI CGRYCG 3 cut(s) 157, 379, 429
BsiHKAI GWGCWC 1 cut(s) 150
BsiSI CCGG 2 cut(s) 202, 524
BslFI GGGAC 2 cut(s) 184, 333
BslI CCNNNNNNNGG 2 cut(s) 201, 207
BsmAI GTCTC 5 cut(s) 101, 166, 256, 392, 619
BsmBI CGTCTC 2 cut(s) 101, 256
BsmFI GGGAC 2 cut(s) 184, 333
BsmI GAATGC 1 cut(s) 565
Bso31I GGTCTC 1 cut(s) 166
Bsp1286I GDGCHC 1 cut(s) 150
Bsp13I TCCGGA 1 cut(s) 523
Bsp143I GATC 7 cut(s) 108, 154, 355, 391, 426, 455, 529
Bsp19I CCATGG 2 cut(s) 137, 165
BspACI CCGC 2 cut(s) 321, 471
BspCNI CTCAG 4 cut(s) 64, 365, 611, 629
BspDI ATCGAT 1 cut(s) 153
BspEI TCCGGA 1 cut(s) 523
BspFNI CGCG 1 cut(s) 473
BspLI GGNNCC 1 cut(s) 522
BspMAI CTGCAG 1 cut(s) 610
BspMI ACCTGC 1 cut(s) 79
BspPI GGATC 2 cut(s) 103, 463
BspTNI GGTCTC 1 cut(s) 166
BsrI ACTGG 1 cut(s) 369
BssECI CCNNGG 4 cut(s) 137, 165, 316, 580
BssMI GATC 7 cut(s) 108, 154, 355, 391, 426, 455, 529
BssT1I CCWWGG 4 cut(s) 137, 165, 316, 580
Bst4CI ACNGT 1 cut(s) 509
Bst6I CTCTTC 2 cut(s) 347, 539
BstC8I GCNNGC 3 cut(s) 39, 408, 555
BstDEI CTNAG 4 cut(s) 51, 352, 598, 616
BstDSI CCRYGG 2 cut(s) 137, 165
BstF5I GGATG 3 cut(s) 283, 333, 532
BstFNI CGCG 1 cut(s) 473
BstHHI GCGC 1 cut(s) 475
BstKTI GATC 7 cut(s) 111, 157, 358, 394, 429, 458, 532
BstMAI GTCTC 5 cut(s) 101, 166, 256, 392, 619
BstMBI GATC 7 cut(s) 108, 154, 355, 391, 426, 455, 529
BstMCI CGRYCG 3 cut(s) 157, 379, 429
BstMWI GCNNNNNNNGC 2 cut(s) 599, 608
BstSCI CCNGG 1 cut(s) 200
BstSFI CTRYAG 1 cut(s) 606
BstUI CGCG 1 cut(s) 473
BstV1I GCAGC 3 cut(s) 589, 592, 620
BstV2I GAAGAC 1 cut(s) 364
BstX2I RGATCY 1 cut(s) 455
BstYI RGATCY 1 cut(s) 455
Bsu15I ATCGAT 1 cut(s) 153
BsuTUI ATCGAT 1 cut(s) 153
BtgI CCRYGG 2 cut(s) 137, 165
BtrI CACGTC 1 cut(s) 95
BtsCI GGATG 3 cut(s) 283, 333, 532
BtsIMutI CAGTG 1 cut(s) 362
BveI ACCTGC 1 cut(s) 79
Cac8I GCNNGC 3 cut(s) 39, 408, 555
CaiI CAGNNNCTG 2 cut(s) 364, 605
CfoI GCGC 1 cut(s) 475
ClaI ATCGAT 1 cut(s) 153
CseI GACGC 2 cut(s) 25, 119
Csp6I GTAC 3 cut(s) 81, 260, 503
CviAII CATG 2 cut(s) 138, 166
CviJI RGCY 8 cut(s) 41, 55, 120, 148, 361, 553, 602, 611
CviKI_1 RGCY 8 cut(s) 41, 55, 120, 148, 361, 553, 602, 611
CviQI GTAC 3 cut(s) 81, 260, 503
DdeI CTNAG 4 cut(s) 51, 352, 598, 616
DpnI GATC 7 cut(s) 110, 156, 357, 393, 428, 457, 531
DpnII GATC 7 cut(s) 108, 154, 355, 391, 426, 455, 529
Eam1104I CTCTTC 2 cut(s) 347, 539
EarI CTCTTC 2 cut(s) 347, 539
Ecl136II GAGCTC 1 cut(s) 148
Eco130I CCWWGG 4 cut(s) 137, 165, 316, 580
Eco24I GRGCYC 1 cut(s) 150
Eco31I GGTCTC 1 cut(s) 166
Eco53kI GAGCTC 1 cut(s) 148
EcoICRI GAGCTC 1 cut(s) 148
EcoT14I CCWWGG 4 cut(s) 137, 165, 316, 580
EcoT38I GRGCYC 1 cut(s) 150
ErhI CCWWGG 4 cut(s) 137, 165, 316, 580
Esp3I CGTCTC 2 cut(s) 101, 256
FaeI CATG 2 cut(s) 141, 169
FaiI YATR 4 cut(s) 139, 167, 443, 479
FaqI GGGAC 2 cut(s) 184, 333
FatI CATG 2 cut(s) 137, 165
FblI GTMKAC 1 cut(s) 422
Fnu4HI GCNGC 3 cut(s) 603, 606, 609
FokI GGATG 3 cut(s) 270, 340, 539
FriOI GRGCYC 1 cut(s) 150
Fsp4HI GCNGC 3 cut(s) 603, 606, 609
FspBI CTAG 1 cut(s) 317
GlaI GCGC 1 cut(s) 474
GluI GCNGC 3 cut(s) 603, 606, 609
HapII CCGG 2 cut(s) 202, 524
HgaI GACGC 2 cut(s) 25, 119
HhaI GCGC 1 cut(s) 475
Hin1II CATG 2 cut(s) 141, 169
Hin6I GCGC 1 cut(s) 473
HinP1I GCGC 1 cut(s) 473
HincII GTYRAC 1 cut(s) 235
HindII GTYRAC 1 cut(s) 235
HinfI GANTC 5 cut(s) 179, 214, 312, 400, 624
HpaI GTTAAC 1 cut(s) 235
HpaII CCGG 2 cut(s) 202, 524
HphI GGTGA 2 cut(s) 19, 178
Hpy166II GTNNAC 3 cut(s) 235, 423, 505
Hpy188I TCNGA 3 cut(s) 311, 355, 391
Hpy188III TCNNGA 2 cut(s) 395, 524
Hpy8I GTNNAC 3 cut(s) 235, 423, 505
Hpy99I CGWCG 5 cut(s) 19, 135, 245, 434, 437
HpyCH4III ACNGT 1 cut(s) 509
HpyCH4IV ACGT 2 cut(s) 94, 240
HpyCH4V TGCA 2 cut(s) 491, 608
HpyF10VI GCNNNNNNNGC 2 cut(s) 599, 608
HpyF3I CTNAG 4 cut(s) 51, 352, 598, 616
HpySE526I ACGT 2 cut(s) 94, 240
Hsp92II CATG 2 cut(s) 141, 169
HspAI GCGC 1 cut(s) 473
Kpn2I TCCGGA 1 cut(s) 523
KspAI GTTAAC 1 cut(s) 235
Kzo9I GATC 7 cut(s) 108, 154, 355, 391, 426, 455, 529
LmnI GCTCC 1 cut(s) 145
LpnPI CCDG 9 cut(s) 36, 84, 189, 215, 350, 537, 549, 567, 603
Lsp1109I GCAGC 3 cut(s) 589, 592, 620
LweI GCATC 1 cut(s) 181
MaeI CTAG 1 cut(s) 317
MaeII ACGT 2 cut(s) 94, 240
MaeIII GTNAC 2 cut(s) 25, 123
MalI GATC 7 cut(s) 110, 156, 357, 393, 428, 457, 531
MboI GATC 7 cut(s) 108, 154, 355, 391, 426, 455, 529
MboII GAAGA 5 cut(s) 79, 223, 334, 364, 526
MflI RGATCY 1 cut(s) 455
MhlI GDGCHC 1 cut(s) 150
MlyI GAGTC 2 cut(s) 306, 394
MmeI TCCRAC 2 cut(s) 305, 433
MroI TCCGGA 1 cut(s) 523
MseI TTAA 2 cut(s) 234, 464
MspA1I CMGCKG 2 cut(s) 602, 611
MspI CCGG 2 cut(s) 202, 524
MspR9I CCNGG 1 cut(s) 202
Mva1269I GAATGC 1 cut(s) 565
MvnI CGCG 1 cut(s) 473
MwoI GCNNNNNNNGC 2 cut(s) 599, 608
NciI CCSGG 1 cut(s) 202
NcoI CCATGG 2 cut(s) 137, 165
NdeII GATC 7 cut(s) 108, 154, 355, 391, 426, 455, 529
NlaIII CATG 2 cut(s) 141, 169
NlaIV GGNNCC 1 cut(s) 522
NmuCI GTSAC 2 cut(s) 25, 123
PaqCI CACCTGC 1 cut(s) 79
PcsI WCGNNNNNNNCGW 2 cut(s) 246, 255
PctI GAATGC 1 cut(s) 565
PfeI GAWTC 2 cut(s) 179, 214
PfoI TCCNGGA 1 cut(s) 200
PkrI GCNGC 3 cut(s) 604, 607, 610
Ple19I CGATCG 2 cut(s) 157, 429
PleI GAGTC 2 cut(s) 306, 394
PpsI GAGTC 2 cut(s) 306, 394
Psp124BI GAGCTC 1 cut(s) 150
PspN4I GGNNCC 1 cut(s) 522
PstI CTGCAG 1 cut(s) 610
PstNI CAGNNNCTG 2 cut(s) 364, 605
PsuI RGATCY 1 cut(s) 455
PvuI CGATCG 2 cut(s) 157, 429
PvuII CAGCTG 2 cut(s) 602, 611
RsaI GTAC 3 cut(s) 82, 261, 504
RsaNI GTAC 3 cut(s) 81, 260, 503
SacI GAGCTC 1 cut(s) 150
SaqAI TTAA 2 cut(s) 234, 464
SatI GCNGC 3 cut(s) 603, 606, 609
Sau3AI GATC 7 cut(s) 108, 154, 355, 391, 426, 455, 529
SchI GAGTC 2 cut(s) 306, 394
ScrFI CCNGG 1 cut(s) 202
SduI GDGCHC 1 cut(s) 150
SfaNI GCATC 1 cut(s) 181
SfcI CTRYAG 1 cut(s) 606
SsiI CCGC 2 cut(s) 321, 471
SspMI CTAG 1 cut(s) 317
SstI GAGCTC 1 cut(s) 150
StyD4I CCNGG 1 cut(s) 200
StyI CCWWGG 4 cut(s) 137, 165, 316, 580
TaaI ACNGT 1 cut(s) 509
TaiI ACGT 2 cut(s) 97, 243
TaqI TCGA 3 cut(s) 107, 153, 394
TaqII GACCGA 1 cut(s) 365
TfiI GAWTC 2 cut(s) 179, 214
Tru1I TTAA 2 cut(s) 234, 464
Tru9I TTAA 2 cut(s) 234, 464
TscAI CASTG 1 cut(s) 369
TseFI GTSAC 2 cut(s) 25, 123
TseI GCWGC 3 cut(s) 602, 605, 608
Tsp45I GTSAC 2 cut(s) 25, 123
TspGWI ACGGA 3 cut(s) 101, 158, 335
TspRI CASTG 1 cut(s) 369
XmaJI CCTAGG 1 cut(s) 316
XmiI GTMKAC 1 cut(s) 422
XspI CTAG 1 cut(s) 317
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.