Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0007014

Physical Location & Seq

Genomic Coordinates Reverse (-)

19384006 .. 19386537

Gene Structure 2532 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g25360.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 636 bp

ATGTCCGCCCCACCGACACTTCCCGTCACCAACCCCCAAACGACGTCGTCCTCCGTCTCCCAGGCCCCCATCGCCACGCCCGCCTTCCGCGCGTTCCTCTCACGCTTCACCTCCTCCATCCGCTCCGGCTTCTCCCAGCGCCGCCCTTGGTACGAGCTCCTCGACCGGAGCTCCCTCGCCCGACCCGACTCCCTCACCGAAGCCTACTCCCGGATCCGAAAGAACTTCACCTATTTCCGCGTCAACTACGTCACTCTCCTCACCGCCGTCCTCGCCCTCTCTCTCCTCACCCACCCCTTCTCTCTCCTCGTCCTCCTCTCCCTCCTCGGCGCGTGGGCCTTCCTCTACCTCTTCCGATCCTCCGATCAGCCCCTCGTCATCGCCGGCCGGACGTTCACCGACGCCGAGACTCTGATCGGCCTCGTCGCCTTGACGGTCATCGTCGTCTTCTTTTCCAGCGTCGGCTCGCTTCTCATCTCGGCGTTGCTGATCGGATTCGGGATTGTCTGCGCGCACGGCGCGTTTAGGGTTCCGGAGGACCTGTTCCTTGACGATCAGGAGCCTGCTAACGCCGGATTCCTCTCGTTCCTCGGTGGTGCCCAGGCTGCTGCTACCGCCGCGGCGGCGCGTGTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005783 GO:0005794 GO:0005802 GO:0006810 GO:0008150 GO:0012505 GO:0016192 GO:0031410 GO:0031982 GO:0031984 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0051179 GO:0051234 GO:0097708 GO:0098791

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PRA1

Protein Analysis

212

Amino Acids

22.75

Weight (kDa)

9.42

Isoelectric Point (pI)

40.42

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PRA1	PF03208	43 - 185	4.3e-48	PRA1 family protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007014)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G40380 AT3G56110 AT3G56110 AT3G56110 AT3G56110 AT5G05380 AT5G05380 AT5G05380 AT5G05380
fragaria_vesca	FvH4_7g25360
malus_domestica	MD01G1159700.v1.1 MD07G1228200.v1.1
prunus_persica	Prupe.2G257700_v2.0.a1
pyrus_communis	pycom01g17610 pycom07g20660
rosa_chinensis	RchiOBHm_Chr1g0371281
rosa_laevigata	RLG00000026974
rosa_multiflora	Rmu_co8217190.1_g000001
rosa_roxburghii	Rroxscaffold_4G00285820
rosa_rugosa	Rorug01G0362600
rosa_samantha	Rh1AG372700 Rh1BG336200 Rh1CG349600 Rh1DG367300
rosa_wichuraiana	Rw1G032780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	47
AccB1I	GGYRCC	1 cut(s)	596
AccBSI	CCGCTC	1 cut(s)	123
AccII	CGCG	8 cut(s)	90, 92, 240, 332, 512, 521, 620, 628
AccIII	TCCGGA	1 cut(s)	532
AclWI	GGATC	3 cut(s)	208, 221, 351
AcoI	YGGCCR	1 cut(s)	385
AcyI	GRCGYC	2 cut(s)	44, 402
AfaI	GTAC	1 cut(s)	152
AfiI	CCNNNNNNNGG	1 cut(s)	210
AjnI	CCWGG	2 cut(s)	60, 600
AloI	GAACNNNNNNTCC	2 cut(s)	527, 559
AluBI	AGCT	2 cut(s)	157, 171
AluI	AGCT	2 cut(s)	157, 171
Alw21I	GWGCWC	2 cut(s)	159, 173
Alw26I	GTCTC	2 cut(s)	61, 401
AlwI	GGATC	3 cut(s)	208, 221, 351
Aor13HI	TCCGGA	1 cut(s)	532
AoxI	GGCC	4 cut(s)	63, 336, 385, 418
ApeKI	GCWGC	2 cut(s)	605, 608
AspLEI	GCGC	7 cut(s)	92, 141, 332, 512, 514, 521, 628
AspS9I	GGNCC	3 cut(s)	64, 336, 538
AsuC2I	CCSGG	1 cut(s)	211
AsuHPI	GGTGA	7 cut(s)	19, 100, 187, 220, 253, 280, 388
AvaII	GGWCC	1 cut(s)	538
BaeGI	GKGCMC	1 cut(s)	601
BamHI	GGATCC	1 cut(s)	213
BanI	GGYRCC	1 cut(s)	596
BanII	GRGCYC	2 cut(s)	159, 173
BbsI	GAAGAC	1 cut(s)	439
Bbv12I	GWGCWC	2 cut(s)	159, 173
BbvI	GCAGC	2 cut(s)	592, 595
BccI	CCATC	2 cut(s)	77, 125
BceAI	ACGGC	2 cut(s)	251, 532
BciT130I	CCWGG	2 cut(s)	62, 602
BcnI	CCSGG	1 cut(s)	211
BcoDI	GTCTC	2 cut(s)	61, 401
BfoI	RGCGCY	1 cut(s)	142
BglI	GCCNNNNNGGC	1 cut(s)	623
BisI	GCNGC	6 cut(s)	142, 606, 609, 618, 621, 624
BlsI	GCNGC	6 cut(s)	143, 607, 610, 619, 622, 625
Bme1390I	CCNGG	3 cut(s)	62, 211, 602
Bme18I	GGWCC	1 cut(s)	538
BmgT120I	GGNCC	3 cut(s)	64, 336, 538
BmiI	GGNNCC	5 cut(s)	66, 215, 531, 561, 598
BmrFI	CCNGG	3 cut(s)	62, 211, 602
BpiI	GAAGAC	1 cut(s)	439
BpuMI	CCSGG	1 cut(s)	211
BsaHI	GRCGYC	2 cut(s)	44, 402
BsaJI	CCNNGG	6 cut(s)	60, 146, 325, 589, 600, 618
BsaWI	WCCGGW	2 cut(s)	165, 532
BsaXI	ACNNNNNCTCC	4 cut(s)	155, 185, 527, 557
Bsc4I	CCNNNNNNNGG	1 cut(s)	210
Bse118I	RCCGGY	1 cut(s)	383
BseAI	TCCGGA	1 cut(s)	532
BseBI	CCWGG	2 cut(s)	62, 602
BseDI	CCNNGG	6 cut(s)	60, 146, 325, 589, 600, 618
BseGI	GGATG	1 cut(s)	117
BseLI	CCNNNNNNNGG	1 cut(s)	210
BsePI	GCGCGC	1 cut(s)	510
BseRI	GAGGAG	7 cut(s)	103, 149, 248, 275, 296, 305, 314
BseSI	GKGCMC	1 cut(s)	601
BseX3I	CGGCCG	1 cut(s)	385
BseXI	GCAGC	2 cut(s)	592, 595
BseYI	CCCAGC	1 cut(s)	135
Bsh1236I	CGCG	8 cut(s)	90, 92, 240, 332, 512, 521, 620, 628
Bsh1285I	CGRYCG	2 cut(s)	166, 388
BshFI	GGCC	4 cut(s)	65, 338, 387, 420
BshNI	GGYRCC	1 cut(s)	596
BsiEI	CGRYCG	2 cut(s)	166, 388
BsiHKAI	GWGCWC	2 cut(s)	159, 173
BsiSI	CCGG	7 cut(s)	126, 166, 211, 384, 388, 533, 573
BslI	CCNNNNNNNGG	1 cut(s)	210
BsmAI	GTCTC	2 cut(s)	61, 401
BsmBI	CGTCTC	1 cut(s)	61
BsnI	GGCC	4 cut(s)	65, 338, 387, 420
Bsp1286I	GDGCHC	3 cut(s)	159, 173, 601
Bsp13I	TCCGGA	1 cut(s)	532
Bsp143I	GATC	6 cut(s)	213, 356, 364, 414, 489, 553
BspANI	GGCC	4 cut(s)	65, 338, 387, 420
BspEI	TCCGGA	1 cut(s)	532
BspFNI	CGCG	8 cut(s)	90, 92, 240, 332, 512, 521, 620, 628
BspLI	GGNNCC	5 cut(s)	66, 215, 531, 561, 598
BspPI	GGATC	3 cut(s)	208, 221, 351
BspT107I	GGYRCC	1 cut(s)	596
BsrBI	CCGCTC	1 cut(s)	123
BsrFI	RCCGGY	1 cut(s)	383
BssAI	RCCGGY	1 cut(s)	383
BssECI	CCNNGG	6 cut(s)	60, 146, 325, 589, 600, 618
BssHII	GCGCGC	1 cut(s)	510
BssMI	GATC	6 cut(s)	213, 356, 364, 414, 489, 553
BssNI	GRCGYC	2 cut(s)	44, 402
BssT1I	CCWWGG	1 cut(s)	146
Bst2UI	CCWGG	2 cut(s)	62, 602
Bst4CI	ACNGT	1 cut(s)	436
Bst6I	CTCTTC	1 cut(s)	356
BstACI	GRCGYC	2 cut(s)	44, 402
BstC8I	GCNNGC	5 cut(s)	81, 385, 467, 512, 564
BstDSI	CCRYGG	1 cut(s)	618
BstF5I	GGATG	1 cut(s)	117
BstFNI	CGCG	8 cut(s)	90, 92, 240, 332, 512, 521, 620, 628
BstH2I	RGCGCY	1 cut(s)	142
BstHHI	GCGC	7 cut(s)	92, 141, 332, 512, 514, 521, 628
BstKTI	GATC	6 cut(s)	216, 359, 367, 417, 492, 556
BstMAI	GTCTC	2 cut(s)	61, 401
BstMBI	GATC	6 cut(s)	213, 356, 364, 414, 489, 553
BstMCI	CGRYCG	2 cut(s)	166, 388
BstNI	CCWGG	2 cut(s)	62, 602
BstSCI	CCNGG	3 cut(s)	60, 209, 600
BstSLI	GKGCMC	1 cut(s)	601
BstUI	CGCG	8 cut(s)	90, 92, 240, 332, 512, 521, 620, 628
BstV1I	GCAGC	2 cut(s)	592, 595
BstV2I	GAAGAC	1 cut(s)	439
BstX2I	RGATCY	1 cut(s)	213
BstYI	RGATCY	1 cut(s)	213
BstZI	CGGCCG	1 cut(s)	385
BsuRI	GGCC	4 cut(s)	65, 338, 387, 420
BtgI	CCRYGG	1 cut(s)	618
BtgZI	GCGATG	2 cut(s)	55, 364
BtsCI	GGATG	1 cut(s)	117
Cac8I	GCNNGC	5 cut(s)	81, 385, 467, 512, 564
CfoI	GCGC	7 cut(s)	92, 141, 332, 512, 514, 521, 628
Cfr10I	RCCGGY	1 cut(s)	383
Cfr13I	GGNCC	3 cut(s)	64, 336, 538
Cfr42I	CCGCGG	1 cut(s)	621
CseI	GACGC	3 cut(s)	229, 410, 448
Csp6I	GTAC	1 cut(s)	151
CviQI	GTAC	1 cut(s)	151
DpnI	GATC	6 cut(s)	215, 358, 366, 416, 491, 555
DpnII	GATC	6 cut(s)	213, 356, 364, 414, 489, 553
EaeI	YGGCCR	1 cut(s)	385
EagI	CGGCCG	1 cut(s)	385
Eam1104I	CTCTTC	1 cut(s)	356
EarI	CTCTTC	1 cut(s)	356
Ecl136II	GAGCTC	2 cut(s)	157, 171
EclXI	CGGCCG	1 cut(s)	385
Eco130I	CCWWGG	1 cut(s)	146
Eco24I	GRGCYC	2 cut(s)	159, 173
Eco47I	GGWCC	1 cut(s)	538
Eco52I	CGGCCG	1 cut(s)	385
Eco53kI	GAGCTC	2 cut(s)	157, 171
EcoICRI	GAGCTC	2 cut(s)	157, 171
EcoO109I	RGGNCCY	2 cut(s)	64, 538
EcoRII	CCWGG	2 cut(s)	60, 600
EcoT14I	CCWWGG	1 cut(s)	146
EcoT38I	GRGCYC	2 cut(s)	159, 173
ErhI	CCWWGG	1 cut(s)	146
Esp3I	CGTCTC	1 cut(s)	61
FauI	CCCGC	1 cut(s)	88
Fnu4HI	GCNGC	6 cut(s)	142, 606, 609, 618, 621, 624
FokI	GGATG	1 cut(s)	104
FriOI	GRGCYC	2 cut(s)	159, 173
Fsp4HI	GCNGC	6 cut(s)	142, 606, 609, 618, 621, 624
GlaI	GCGC	7 cut(s)	91, 140, 331, 511, 513, 520, 627
GluI	GCNGC	6 cut(s)	142, 606, 609, 618, 621, 624
GsaI	CCCAGC	1 cut(s)	139
HaeII	RGCGCY	1 cut(s)	142
HaeIII	GGCC	4 cut(s)	65, 338, 387, 420
HapII	CCGG	7 cut(s)	126, 166, 211, 384, 388, 533, 573
HgaI	GACGC	3 cut(s)	229, 410, 448
HhaI	GCGC	7 cut(s)	92, 141, 332, 512, 514, 521, 628
Hin1I	GRCGYC	2 cut(s)	44, 402
Hin6I	GCGC	7 cut(s)	90, 139, 330, 510, 512, 519, 626
HinP1I	GCGC	7 cut(s)	90, 139, 330, 510, 512, 519, 626
HincII	GTYRAC	1 cut(s)	244
HindII	GTYRAC	1 cut(s)	244
HinfI	GANTC	4 cut(s)	188, 409, 495, 576
HpaII	CCGG	7 cut(s)	126, 166, 211, 384, 388, 533, 573
HphI	GGTGA	7 cut(s)	19, 100, 187, 220, 253, 280, 388
Hpy166II	GTNNAC	2 cut(s)	244, 396
Hpy188I	TCNGA	5 cut(s)	218, 356, 364, 414, 494
Hpy188III	TCNNGA	3 cut(s)	499, 533, 557
Hpy8I	GTNNAC	2 cut(s)	244, 396
Hpy99I	CGWCG	6 cut(s)	46, 49, 404, 428, 446, 464
HpyAV	CCTTC	3 cut(s)	94, 307, 349
HpyCH4III	ACNGT	1 cut(s)	436
HpyCH4IV	ACGT	3 cut(s)	44, 249, 392
HpySE526I	ACGT	3 cut(s)	44, 249, 392
Hsp92I	GRCGYC	2 cut(s)	44, 402
HspAI	GCGC	7 cut(s)	90, 139, 330, 510, 512, 519, 626
Kpn2I	TCCGGA	1 cut(s)	532
KroI	GCCGGC	1 cut(s)	383
KroNI	GCCGGC	1 cut(s)	385
KspI	CCGCGG	1 cut(s)	621
Kzo9I	GATC	6 cut(s)	213, 356, 364, 414, 489, 553
LmnI	GCTCC	5 cut(s)	128, 162, 168, 176, 559
Lsp1109I	GCAGC	2 cut(s)	592, 595
MaeII	ACGT	3 cut(s)	44, 249, 392
MaeIII	GTNAC	2 cut(s)	25, 250
MalI	GATC	6 cut(s)	215, 358, 366, 416, 491, 555
MbiI	CCGCTC	1 cut(s)	123
MboI	GATC	6 cut(s)	213, 356, 364, 414, 489, 553
MboII	GAAGA	2 cut(s)	343, 439
MflI	RGATCY	1 cut(s)	213
MhlI	GDGCHC	3 cut(s)	159, 173, 601
MlyI	GAGTC	2 cut(s)	182, 403
MroI	TCCGGA	1 cut(s)	532
MroNI	GCCGGC	1 cut(s)	383
MspA1I	CMGCKG	1 cut(s)	620
MspI	CCGG	7 cut(s)	126, 166, 211, 384, 388, 533, 573
MspR9I	CCNGG	3 cut(s)	62, 211, 602
MvaI	CCWGG	2 cut(s)	62, 602
MvnI	CGCG	8 cut(s)	90, 92, 240, 332, 512, 521, 620, 628
NaeI	GCCGGC	1 cut(s)	385
NciI	CCSGG	1 cut(s)	211
NdeII	GATC	6 cut(s)	213, 356, 364, 414, 489, 553
NgoMIV	GCCGGC	1 cut(s)	383
NlaIV	GGNNCC	5 cut(s)	66, 215, 531, 561, 598
NmeAIII	GCCGAG	3 cut(s)	306, 430, 458
NmuCI	GTSAC	2 cut(s)	25, 250
PauI	GCGCGC	1 cut(s)	510
PcsI	WCGNNNNNNNCGW	2 cut(s)	159, 183
PdiI	GCCGGC	1 cut(s)	385
PfeI	GAWTC	2 cut(s)	495, 576
PflFI	GACNNNGTC	1 cut(s)	46
PfoI	TCCNGGA	1 cut(s)	209
PkrI	GCNGC	6 cut(s)	143, 607, 610, 619, 622, 625
PleI	GAGTC	2 cut(s)	182, 403
PpsI	GAGTC	2 cut(s)	182, 403
PpuMI	RGGWCCY	1 cut(s)	538
Psp124BI	GAGCTC	2 cut(s)	159, 173
Psp5II	RGGWCCY	1 cut(s)	538
Psp6I	CCWGG	2 cut(s)	60, 600
PspFI	CCCAGC	1 cut(s)	135
PspGI	CCWGG	2 cut(s)	60, 600
PspN4I	GGNNCC	5 cut(s)	66, 215, 531, 561, 598
PspPI	GGNCC	3 cut(s)	64, 336, 538
PspPPI	RGGWCCY	1 cut(s)	538
PsuI	RGATCY	1 cut(s)	213
PsyI	GACNNNGTC	1 cut(s)	46
PteI	GCGCGC	1 cut(s)	510
RsaI	GTAC	1 cut(s)	152
RsaNI	GTAC	1 cut(s)	151
SacI	GAGCTC	2 cut(s)	159, 173
SacII	CCGCGG	1 cut(s)	621
SatI	GCNGC	6 cut(s)	142, 606, 609, 618, 621, 624
Sau3AI	GATC	6 cut(s)	213, 356, 364, 414, 489, 553
Sau96I	GGNCC	3 cut(s)	64, 336, 538
SchI	GAGTC	2 cut(s)	182, 403
ScrFI	CCNGG	3 cut(s)	62, 211, 602
SduI	GDGCHC	3 cut(s)	159, 173, 601
SetI	ASST	9 cut(s)	47, 113, 159, 173, 233, 252, 351, 395, 543
Sfr303I	CCGCGG	1 cut(s)	621
SgrBI	CCGCGG	1 cut(s)	621
SinI	GGWCC	1 cut(s)	538
SstI	GAGCTC	2 cut(s)	159, 173
StyD4I	CCNGG	3 cut(s)	60, 209, 600
StyI	CCWWGG	1 cut(s)	146
TaaI	ACNGT	1 cut(s)	436
TaiI	ACGT	3 cut(s)	47, 252, 395
TaqI	TCGA	1 cut(s)	162
TauI	GCSGC	4 cut(s)	144, 620, 623, 626
TfiI	GAWTC	2 cut(s)	495, 576
TseFI	GTSAC	2 cut(s)	25, 250
TseI	GCWGC	2 cut(s)	605, 608
Tsp45I	GTSAC	2 cut(s)	25, 250
TspGWI	ACGGA	1 cut(s)	43
Tth111I	GACNNNGTC	1 cut(s)	46
VpaK11BI	GGWCC	1 cut(s)	538
ZraI	GACGTC	1 cut(s)	45

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.