Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr01

Orthogroup ID

OG0007014

Physical Location & Seq

Genomic Coordinates Reverse (-)

26591544 .. 26592182

Gene Structure 639 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD01G1159700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 639 bp

ATGGCAGGCCCACCGACACTCCCGATGTCCAACTCCCAAACGACCGTCGGCGCCCAGTCGCAGCCTCCCATCGCCACGCCGGCCTTCCGCGCGTTCATCTCGCGCTTATCCTCCTCCGTGCGCCACGGCTTCTCGCAGCGCCGCCCCTGGTACGAGCTCGTGGACCGGAGCGCCTTGGCCCGACCCGACTCCCTCACCGAGGCCTACTCCCGGATCCGCAAGAATTTCACCTACTTCCGCGTCAACTACGTGTCCCTACTCACCCTCGTACTCGCCCTCTCTCTCCTCACCCATCCTTTCTCTCTCGTCGTCCTGCTCTCCCTCCTCGGCGCGTGGGCTTTCCTCTACCTGTTTCGAGCGTCCGATCAGCCCCTGGTCATCCTCGGCCGTACTTTCTCCGACGCCGAAACATTAATCGGACTCGTCGTGCTGACCGTGGTCGTCGTCTTCATGTCCAGCGTCGGCTCGCTCCTGATCTCAGCTTTGTTGATCGGATTCGCCATTGTTTGCGCGCACGGGGCGTTCAGGGTTCCAGAGGACCTGTTCCTCGACGAGCAGGAGCCCGCCAACGCCGGATTTCTCTCGTTCCTCGGCGGCGCCACCTCGTCCGCCGCTGCCTCCGTAGCCGGACGTGTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005783 GO:0005794 GO:0005802 GO:0006810 GO:0008150 GO:0012505 GO:0016192 GO:0031410 GO:0031982 GO:0031984 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0051179 GO:0051234 GO:0097708 GO:0098791

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PRA1

Protein Analysis

213

Amino Acids

22.84

Weight (kDa)

9.42

Isoelectric Point (pI)

40.95

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PRA1	PF03208	43 - 186	1.2e-48	PRA1 family protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007014)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G40380 AT3G56110 AT3G56110 AT3G56110 AT3G56110 AT5G05380 AT5G05380 AT5G05380 AT5G05380
fragaria_vesca	FvH4_7g25360
malus_domestica	MD01G1159700.v1.1 MD07G1228200.v1.1
prunus_persica	Prupe.2G257700_v2.0.a1
pyrus_communis	pycom01g17610 pycom07g20660
rosa_chinensis	RchiOBHm_Chr1g0371281
rosa_laevigata	RLG00000026974
rosa_multiflora	Rmu_co8217190.1_g000001
rosa_roxburghii	Rroxscaffold_4G00285820
rosa_rugosa	Rorug01G0362600
rosa_samantha	Rh1AG372700 Rh1BG336200 Rh1CG349600 Rh1DG367300
rosa_wichuraiana	Rw1G032780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	50, 596
AccII	CGCG	6 cut(s)	90, 92, 103, 240, 332, 512
AciI	CCGC	8 cut(s)	88, 142, 217, 238, 564, 594, 609, 612
AclWI	GGATC	2 cut(s)	208, 221
AcoI	YGGCCR	1 cut(s)	385
AcsI	RAATTY	1 cut(s)	223
AcyI	GRCGYC	3 cut(s)	51, 402, 597
AfaI	GTAC	3 cut(s)	152, 270, 391
AfiI	CCNNNNNNNGG	2 cut(s)	199, 210
AflIII	ACRYGT	2 cut(s)	249, 631
AjiI	CACGTC	1 cut(s)	632
AjnI	CCWGG	2 cut(s)	146, 372
AluBI	AGCT	2 cut(s)	157, 482
AluI	AGCT	2 cut(s)	157, 482
Alw21I	GWGCWC	1 cut(s)	159
AlwI	GGATC	2 cut(s)	208, 221
AlwNI	CAGNNNCTG	1 cut(s)	373
AoxI	GGCC	5 cut(s)	7, 81, 177, 201, 385
ApeKI	GCWGC	3 cut(s)	61, 136, 614
ApoI	RAATTY	1 cut(s)	223
AseI	ATTAAT	1 cut(s)	413
AspS9I	GGNCC	4 cut(s)	8, 163, 178, 538
AsuC2I	CCSGG	1 cut(s)	211
AsuHPI	GGTGA	4 cut(s)	187, 220, 253, 280
AvaII	GGWCC	2 cut(s)	163, 538
BamHI	GGATCC	1 cut(s)	213
BanI	GGYRCC	2 cut(s)	50, 596
BanII	GRGCYC	2 cut(s)	159, 564
BauI	CACGAG	1 cut(s)	158
BbsI	GAAGAC	1 cut(s)	439
Bbv12I	GWGCWC	1 cut(s)	159
BbvI	GCAGC	3 cut(s)	73, 148, 601
BccI	CCATC	2 cut(s)	77, 300
BceAI	ACGGC	2 cut(s)	142, 372
BciT130I	CCWGG	2 cut(s)	148, 374
BcnI	CCSGG	1 cut(s)	211
BfoI	RGCGCY	4 cut(s)	54, 142, 174, 600
BglI	GCCNNNNNGGC	1 cut(s)	80
BisI	GCNGC	6 cut(s)	62, 137, 142, 595, 612, 615
BlsI	GCNGC	6 cut(s)	63, 138, 143, 596, 613, 616
Bme1390I	CCNGG	3 cut(s)	148, 211, 374
Bme18I	GGWCC	2 cut(s)	163, 538
BmgBI	CACGTC	1 cut(s)	632
BmgT120I	GGNCC	4 cut(s)	8, 163, 178, 538
BmiI	GGNNCC	5 cut(s)	52, 215, 531, 561, 598
BmrFI	CCNGG	3 cut(s)	148, 211, 374
BmrI	ACTGGG	1 cut(s)	49
BmuI	ACTGGG	1 cut(s)	49
BoxI	GACNNNNGTC	1 cut(s)	437
BpiI	GAAGAC	1 cut(s)	439
BplI	GAGNNNNNCTC	2 cut(s)	191, 223
BpuMI	CCSGG	1 cut(s)	211
BsaAI	YACGTR	1 cut(s)	250
BsaHI	GRCGYC	3 cut(s)	51, 402, 597
BsaJI	CCNNGG	9 cut(s)	124, 146, 174, 198, 325, 372, 382, 435, 589
BsaWI	WCCGGW	1 cut(s)	165
BsaXI	ACNNNNNCTCC	1 cut(s)	33
Bsc4I	CCNNNNNNNGG	2 cut(s)	199, 210
Bse118I	RCCGGY	1 cut(s)	79
Bse1I	ACTGG	1 cut(s)	55
BseBI	CCWGG	2 cut(s)	148, 374
BseDI	CCNNGG	9 cut(s)	124, 146, 174, 198, 325, 372, 382, 435, 589
BseGI	GGATG	2 cut(s)	292, 378
BseLI	CCNNNNNNNGG	2 cut(s)	199, 210
BseMII	CTCAG	1 cut(s)	492
BseNI	ACTGG	1 cut(s)	55
BsePI	GCGCGC	1 cut(s)	510
BseRI	GAGGAG	3 cut(s)	103, 275, 314
BseX3I	CGGCCG	1 cut(s)	385
BseXI	GCAGC	3 cut(s)	73, 148, 601
Bsh1236I	CGCG	6 cut(s)	90, 92, 103, 240, 332, 512
Bsh1285I	CGRYCG	2 cut(s)	45, 388
BshFI	GGCC	5 cut(s)	9, 83, 179, 203, 387
BshNI	GGYRCC	2 cut(s)	50, 596
BsiEI	CGRYCG	2 cut(s)	45, 388
BsiHKAI	GWGCWC	1 cut(s)	159
BsiSI	CCGG	5 cut(s)	80, 166, 211, 573, 627
BslFI	GGGAC	1 cut(s)	238
BslI	CCNNNNNNNGG	2 cut(s)	199, 210
BsmFI	GGGAC	1 cut(s)	238
BsnI	GGCC	5 cut(s)	9, 83, 179, 203, 387
Bsp1286I	GDGCHC	2 cut(s)	159, 564
Bsp143I	GATC	4 cut(s)	213, 364, 474, 489
BspACI	CCGC	8 cut(s)	88, 142, 217, 238, 564, 594, 609, 612
BspANI	GGCC	5 cut(s)	9, 83, 179, 203, 387
BspCNI	CTCAG	1 cut(s)	491
BspFNI	CGCG	6 cut(s)	90, 92, 103, 240, 332, 512
BspLI	GGNNCC	5 cut(s)	52, 215, 531, 561, 598
BspPI	GGATC	2 cut(s)	208, 221
BspT107I	GGYRCC	2 cut(s)	50, 596
BsrFI	RCCGGY	1 cut(s)	79
BsrI	ACTGG	1 cut(s)	55
BssAI	RCCGGY	1 cut(s)	79
BssECI	CCNNGG	9 cut(s)	124, 146, 174, 198, 325, 372, 382, 435, 589
BssHII	GCGCGC	1 cut(s)	510
BssMI	GATC	4 cut(s)	213, 364, 474, 489
BssNI	GRCGYC	3 cut(s)	51, 402, 597
BssSI	CACGAG	1 cut(s)	158
BssT1I	CCWWGG	1 cut(s)	174
Bst2BI	CACGAG	1 cut(s)	158
Bst2UI	CCWGG	2 cut(s)	148, 374
Bst4CI	ACNGT	2 cut(s)	46, 436
BstACI	GRCGYC	3 cut(s)	51, 402, 597
BstBAI	YACGTR	1 cut(s)	250
BstC8I	GCNNGC	5 cut(s)	7, 81, 467, 512, 564
BstDEI	CTNAG	1 cut(s)	478
BstDSI	CCRYGG	2 cut(s)	124, 435
BstENI	CCTNNNNNAGG	1 cut(s)	197
BstF5I	GGATG	2 cut(s)	292, 378
BstFNI	CGCG	6 cut(s)	90, 92, 103, 240, 332, 512
BstH2I	RGCGCY	4 cut(s)	54, 142, 174, 600
BstKTI	GATC	4 cut(s)	216, 367, 477, 492
BstMBI	GATC	4 cut(s)	213, 364, 474, 489
BstMCI	CGRYCG	2 cut(s)	45, 388
BstMWI	GCNNNNNNNGC	4 cut(s)	80, 89, 518, 623
BstNI	CCWGG	2 cut(s)	148, 374
BstPAI	GACNNNNGTC	1 cut(s)	437
BstSCI	CCNGG	3 cut(s)	146, 209, 372
BstUI	CGCG	6 cut(s)	90, 92, 103, 240, 332, 512
BstV1I	GCAGC	3 cut(s)	73, 148, 601
BstV2I	GAAGAC	1 cut(s)	439
BstX2I	RGATCY	1 cut(s)	213
BstYI	RGATCY	1 cut(s)	213
BstZI	CGGCCG	1 cut(s)	385
BsuRI	GGCC	5 cut(s)	9, 83, 179, 203, 387
BtgI	CCRYGG	2 cut(s)	124, 435
BtgZI	GCGATG	1 cut(s)	55
BtrI	CACGTC	1 cut(s)	632
BtsCI	GGATG	2 cut(s)	292, 378
Cac8I	GCNNGC	5 cut(s)	7, 81, 467, 512, 564
CaiI	CAGNNNCTG	1 cut(s)	373
Cfr10I	RCCGGY	1 cut(s)	79
Cfr13I	GGNCC	4 cut(s)	8, 163, 178, 538
CseI	GACGC	4 cut(s)	229, 348, 410, 448
Csp6I	GTAC	3 cut(s)	151, 269, 390
CviAII	CATG	1 cut(s)	451
CviQI	GTAC	3 cut(s)	151, 269, 390
DdeI	CTNAG	1 cut(s)	478
DinI	GGCGCC	2 cut(s)	52, 598
DpnI	GATC	4 cut(s)	215, 366, 476, 491
DpnII	GATC	4 cut(s)	213, 364, 474, 489
EaeI	YGGCCR	1 cut(s)	385
EagI	CGGCCG	1 cut(s)	385
EciI	GGCGGA	1 cut(s)	598
Ecl136II	GAGCTC	1 cut(s)	157
EclXI	CGGCCG	1 cut(s)	385
Eco130I	CCWWGG	1 cut(s)	174
Eco147I	AGGCCT	1 cut(s)	203
Eco24I	GRGCYC	2 cut(s)	159, 564
Eco47I	GGWCC	2 cut(s)	163, 538
Eco52I	CGGCCG	1 cut(s)	385
Eco53kI	GAGCTC	1 cut(s)	157
EcoICRI	GAGCTC	1 cut(s)	157
EcoNI	CCTNNNNNAGG	1 cut(s)	197
EcoO109I	RGGNCCY	1 cut(s)	538
EcoRII	CCWGG	2 cut(s)	146, 372
EcoT14I	CCWWGG	1 cut(s)	174
EcoT38I	GRGCYC	2 cut(s)	159, 564
EgeI	GGCGCC	2 cut(s)	52, 598
EheI	GGCGCC	2 cut(s)	52, 598
ErhI	CCWWGG	1 cut(s)	174
FaeI	CATG	1 cut(s)	454
FaiI	YATR	1 cut(s)	452
FaqI	GGGAC	1 cut(s)	238
FatI	CATG	1 cut(s)	450
FauI	CCCGC	1 cut(s)	571
Fnu4HI	GCNGC	6 cut(s)	62, 137, 142, 595, 612, 615
FokI	GGATG	2 cut(s)	279, 365
FriOI	GRGCYC	2 cut(s)	159, 564
Fsp4HI	GCNGC	6 cut(s)	62, 137, 142, 595, 612, 615
GluI	GCNGC	6 cut(s)	62, 137, 142, 595, 612, 615
HaeII	RGCGCY	4 cut(s)	54, 142, 174, 600
HaeIII	GGCC	5 cut(s)	9, 83, 179, 203, 387
HapII	CCGG	5 cut(s)	80, 166, 211, 573, 627
HgaI	GACGC	4 cut(s)	229, 348, 410, 448
Hin1I	GRCGYC	3 cut(s)	51, 402, 597
Hin1II	CATG	1 cut(s)	454
HincII	GTYRAC	1 cut(s)	244
HindII	GTYRAC	1 cut(s)	244
HinfI	GANTC	3 cut(s)	188, 420, 495
HpaII	CCGG	5 cut(s)	80, 166, 211, 573, 627
HphI	GGTGA	4 cut(s)	187, 220, 253, 280
Hpy166II	GTNNAC	2 cut(s)	163, 244
Hpy188I	TCNGA	4 cut(s)	364, 400, 419, 494
Hpy188III	TCNNGA	3 cut(s)	22, 472, 533
Hpy8I	GTNNAC	2 cut(s)	163, 244
Hpy99I	CGWCG	7 cut(s)	50, 311, 404, 428, 446, 464, 554
HpyAV	CCTTC	1 cut(s)	94
HpyCH4III	ACNGT	2 cut(s)	46, 436
HpyCH4IV	ACGT	2 cut(s)	249, 631
HpyF10VI	GCNNNNNNNGC	4 cut(s)	80, 89, 518, 623
HpyF3I	CTNAG	1 cut(s)	478
HpySE526I	ACGT	2 cut(s)	249, 631
Hsp92I	GRCGYC	3 cut(s)	51, 402, 597
Hsp92II	CATG	1 cut(s)	454
KasI	GGCGCC	2 cut(s)	50, 596
KroI	GCCGGC	1 cut(s)	79
KroNI	GCCGGC	1 cut(s)	81
Kzo9I	GATC	4 cut(s)	213, 364, 474, 489
LmnI	GCTCC	3 cut(s)	168, 474, 559
Lsp1109I	GCAGC	3 cut(s)	73, 148, 601
MaeII	ACGT	2 cut(s)	249, 631
MalI	GATC	4 cut(s)	215, 366, 476, 491
MboI	GATC	4 cut(s)	213, 364, 474, 489
MboII	GAAGA	1 cut(s)	439
MflI	RGATCY	1 cut(s)	213
MhlI	GDGCHC	2 cut(s)	159, 564
MluCI	AATT	1 cut(s)	223
Mly113I	GGCGCC	2 cut(s)	51, 597
MlyI	GAGTC	2 cut(s)	182, 414
MmeI	TCCRAC	2 cut(s)	54, 423
MroNI	GCCGGC	1 cut(s)	79
MseI	TTAA	1 cut(s)	413
MspA1I	CMGCKG	1 cut(s)	614
MspI	CCGG	5 cut(s)	80, 166, 211, 573, 627
MspR9I	CCNGG	3 cut(s)	148, 211, 374
MvaI	CCWGG	2 cut(s)	148, 374
MvnI	CGCG	6 cut(s)	90, 92, 103, 240, 332, 512
MwoI	GCNNNNNNNGC	4 cut(s)	80, 89, 518, 623
NaeI	GCCGGC	1 cut(s)	81
NarI	GGCGCC	2 cut(s)	51, 597
NciI	CCSGG	1 cut(s)	211
NdeII	GATC	4 cut(s)	213, 364, 474, 489
NgoMIV	GCCGGC	1 cut(s)	79
NlaIII	CATG	1 cut(s)	454
NlaIV	GGNNCC	5 cut(s)	52, 215, 531, 561, 598
NmeAIII	GCCGAG	3 cut(s)	306, 363, 570
PauI	GCGCGC	1 cut(s)	510
PceI	AGGCCT	1 cut(s)	203
PcsI	WCGNNNNNNNCGW	2 cut(s)	423, 432
PdiI	GCCGGC	1 cut(s)	81
PfeI	GAWTC	1 cut(s)	495
PfoI	TCCNGGA	1 cut(s)	209
PkrI	GCNGC	6 cut(s)	63, 138, 143, 596, 613, 616
PleI	GAGTC	2 cut(s)	182, 414
PluTI	GGCGCC	2 cut(s)	54, 600
PpsI	GAGTC	2 cut(s)	182, 414
Ppu21I	YACGTR	1 cut(s)	250
PpuMI	RGGWCCY	1 cut(s)	538
PshAI	GACNNNNGTC	1 cut(s)	437
PshBI	ATTAAT	1 cut(s)	413
Psp124BI	GAGCTC	1 cut(s)	159
Psp5II	RGGWCCY	1 cut(s)	538
Psp6I	CCWGG	2 cut(s)	146, 372
PspGI	CCWGG	2 cut(s)	146, 372
PspN4I	GGNNCC	5 cut(s)	52, 215, 531, 561, 598
PspPI	GGNCC	4 cut(s)	8, 163, 178, 538
PspPPI	RGGWCCY	1 cut(s)	538
PstNI	CAGNNNCTG	1 cut(s)	373
PsuI	RGATCY	1 cut(s)	213
PteI	GCGCGC	1 cut(s)	510
RsaI	GTAC	3 cut(s)	152, 270, 391
RsaNI	GTAC	3 cut(s)	151, 269, 390
SacI	GAGCTC	1 cut(s)	159
SaqAI	TTAA	1 cut(s)	413
SatI	GCNGC	6 cut(s)	62, 137, 142, 595, 612, 615
Sau3AI	GATC	4 cut(s)	213, 364, 474, 489
Sau96I	GGNCC	4 cut(s)	8, 163, 178, 538
SchI	GAGTC	2 cut(s)	182, 414
ScrFI	CCNGG	3 cut(s)	148, 211, 374
SduI	GDGCHC	2 cut(s)	159, 564
SetI	ASST	8 cut(s)	159, 233, 252, 351, 484, 543, 605, 634
SfoI	GGCGCC	2 cut(s)	52, 598
SinI	GGWCC	2 cut(s)	163, 538
Sse9I	AATT	1 cut(s)	223
SseBI	AGGCCT	1 cut(s)	203
SsiI	CCGC	8 cut(s)	88, 142, 217, 238, 564, 594, 609, 612
SspDI	GGCGCC	2 cut(s)	50, 596
SstI	GAGCTC	1 cut(s)	159
StuI	AGGCCT	1 cut(s)	203
StyD4I	CCNGG	3 cut(s)	146, 209, 372
StyI	CCWWGG	1 cut(s)	174
TaaI	ACNGT	2 cut(s)	46, 436
TaiI	ACGT	2 cut(s)	252, 634
TaqI	TCGA	2 cut(s)	355, 549
TasI	AATT	1 cut(s)	223
TauI	GCSGC	3 cut(s)	144, 597, 614
TfiI	GAWTC	1 cut(s)	495
Tru1I	TTAA	1 cut(s)	413
Tru9I	TTAA	1 cut(s)	413
TseI	GCWGC	3 cut(s)	61, 136, 614
TspDTI	ATGAA	2 cut(s)	85, 439
TspGWI	ACGGA	2 cut(s)	106, 610
VpaK11BI	GGWCC	2 cut(s)	163, 538
VspI	ATTAAT	1 cut(s)	413
XagI	CCTNNNNNAGG	1 cut(s)	197
XapI	RAATTY	1 cut(s)	223

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.