Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr7

Orthogroup ID

OG0007014

Physical Location & Seq

Genomic Coordinates Reverse (-)

22674594 .. 22675229

Gene Structure 636 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom07g20660.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 636 bp

ATGGCCTCCCCAGCGACGCTTCCGATCTCCAACGCCCAAATGACCGTCGGTGCCCAGTCACAGCCTCCGATCGCCACCCCCGCCTTCCGCGCGTTCATCTCACGCCTATCCTCCTCCGTCCGCAACGGCTTCTCGCAGCGCCGCCCCTGGTACGAGCTCGTGGACCGGAGCGCCTTGGCCCGACCCGACTCCCTCACCGACGCCTACTCCCGGATCCGCAAGAATTTCACCTACTTCCGCGTCAATTACGTGTCCCTACTCACCCTCGTACTCGCCCTCTCTCTCCTCACCCATCCTTTCTCCCTCATCGTCCTACTCTCGCTCCTCGGCGCGTGGGCTTTCCTCTACCTGTTTCGAGCGTCCGATCAGCCCCTCGTCATACGCGGCCGCACTTTCTCCGACGCCGAAACCCTCATCGGACTCGTCGTGTTGACCGTGGTCGTCATCTTCATGTCCAGCGTCGGCTCGCTCCTGATCTCGGGTTTGTTGATCGGATTCACCATTGTTTGCGCGCACGGGGCGTTTAGGGTTCCGGATGACCTGTTTCTCGACGATCAAGAGCCCGCCAACGCCGGATTTCTCTCGTTCCTTGGTGGCGCTACCTCCTCCGCCGCTGCCGTCCCTGGACGTGTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005783 GO:0005794 GO:0005802 GO:0006810 GO:0008150 GO:0012505 GO:0016192 GO:0031410 GO:0031982 GO:0031984 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0051179 GO:0051234 GO:0097708 GO:0098791

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PRA1

Protein Analysis

212

Amino Acids

22.8

Weight (kDa)

9.73

Isoelectric Point (pI)

35.13

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PRA1	PF03208	43 - 185	3.4e-48	PRA1 family protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007014)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G40380 AT3G56110 AT3G56110 AT3G56110 AT3G56110 AT5G05380 AT5G05380 AT5G05380 AT5G05380
fragaria_vesca	FvH4_7g25360
malus_domestica	MD01G1159700.v1.1 MD07G1228200.v1.1
prunus_persica	Prupe.2G257700_v2.0.a1
pyrus_communis	pycom01g17610 pycom07g20660
rosa_chinensis	RchiOBHm_Chr1g0371281
rosa_laevigata	RLG00000026974
rosa_multiflora	Rmu_co8217190.1_g000001
rosa_roxburghii	Rroxscaffold_4G00285820
rosa_rugosa	Rorug01G0362600
rosa_samantha	Rh1AG372700 Rh1BG336200 Rh1CG349600 Rh1DG367300
rosa_wichuraiana	Rw1G032780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	50
AccII	CGCG	6 cut(s)	90, 92, 240, 332, 384, 512
AccIII	TCCGGA	1 cut(s)	532
AclWI	GGATC	2 cut(s)	208, 221
AcoI	YGGCCR	1 cut(s)	385
AcsI	RAATTY	1 cut(s)	223
AcyI	GRCGYC	2 cut(s)	201, 402
AfaI	GTAC	2 cut(s)	152, 270
AfiI	CCNNNNNNNGG	2 cut(s)	210, 478
AflIII	ACRYGT	2 cut(s)	249, 628
AjiI	CACGTC	1 cut(s)	629
AjnI	CCWGG	2 cut(s)	146, 622
AluBI	AGCT	1 cut(s)	157
AluI	AGCT	1 cut(s)	157
Alw21I	GWGCWC	1 cut(s)	159
AlwI	GGATC	2 cut(s)	208, 221
Ama87I	CYCGRG	1 cut(s)	478
Aor13HI	TCCGGA	1 cut(s)	532
AoxI	GGCC	3 cut(s)	3, 177, 385
ApeKI	GCWGC	2 cut(s)	136, 614
ApoI	RAATTY	1 cut(s)	223
AspLEI	GCGC	7 cut(s)	92, 141, 173, 332, 512, 514, 599
AspS9I	GGNCC	2 cut(s)	163, 178
AsuC2I	CCSGG	1 cut(s)	211
AsuHPI	GGTGA	5 cut(s)	187, 220, 253, 280, 490
AvaI	CYCGRG	1 cut(s)	478
AvaII	GGWCC	1 cut(s)	163
BaeGI	GKGCMC	1 cut(s)	55
BamHI	GGATCC	1 cut(s)	213
BanI	GGYRCC	1 cut(s)	50
BanII	GRGCYC	2 cut(s)	159, 564
BauI	CACGAG	1 cut(s)	158
Bbv12I	GWGCWC	1 cut(s)	159
BbvI	GCAGC	2 cut(s)	148, 601
BccI	CCATC	1 cut(s)	300
BceAI	ACGGC	2 cut(s)	142, 602
BciT130I	CCWGG	2 cut(s)	148, 624
BcnI	CCSGG	1 cut(s)	211
BfoI	RGCGCY	3 cut(s)	142, 174, 600
BisI	GCNGC	6 cut(s)	137, 142, 385, 388, 612, 615
BlsI	GCNGC	6 cut(s)	138, 143, 386, 389, 613, 616
Bme1390I	CCNGG	3 cut(s)	148, 211, 624
Bme18I	GGWCC	1 cut(s)	163
BmeT110I	CYCGRG	1 cut(s)	478
BmgBI	CACGTC	1 cut(s)	629
BmgT120I	GGNCC	2 cut(s)	163, 178
BmiI	GGNNCC	3 cut(s)	52, 215, 531
BmrFI	CCNGG	3 cut(s)	148, 211, 624
BmrI	ACTGGG	1 cut(s)	49
BmuI	ACTGGG	1 cut(s)	49
BoxI	GACNNNNGTC	1 cut(s)	437
BpuMI	CCSGG	1 cut(s)	211
BsaAI	YACGTR	1 cut(s)	250
BsaHI	GRCGYC	2 cut(s)	201, 402
BsaJI	CCNNGG	6 cut(s)	146, 174, 325, 435, 589, 622
BsaWI	WCCGGW	2 cut(s)	165, 532
BsaXI	ACNNNNNCTCC	4 cut(s)	191, 221, 306, 336
Bsc4I	CCNNNNNNNGG	2 cut(s)	210, 478
Bse1I	ACTGG	1 cut(s)	55
BseAI	TCCGGA	1 cut(s)	532
BseBI	CCWGG	2 cut(s)	148, 624
BseDI	CCNNGG	6 cut(s)	146, 174, 325, 435, 589, 622
BseGI	GGATG	2 cut(s)	292, 541
BseLI	CCNNNNNNNGG	2 cut(s)	210, 478
BseNI	ACTGG	1 cut(s)	55
BsePI	GCGCGC	1 cut(s)	510
BseRI	GAGGAG	4 cut(s)	103, 275, 314, 595
BseSI	GKGCMC	1 cut(s)	55
BseX3I	CGGCCG	1 cut(s)	385
BseXI	GCAGC	2 cut(s)	148, 601
BseYI	CCCAGC	1 cut(s)	10
Bsh1236I	CGCG	6 cut(s)	90, 92, 240, 332, 384, 512
Bsh1285I	CGRYCG	2 cut(s)	72, 388
BshFI	GGCC	3 cut(s)	5, 179, 387
BshNI	GGYRCC	1 cut(s)	50
BsiEI	CGRYCG	2 cut(s)	72, 388
BsiHKAI	GWGCWC	1 cut(s)	159
BsiHKCI	CYCGRG	1 cut(s)	478
BsiSI	CCGG	4 cut(s)	166, 211, 533, 573
BslFI	GGGAC	2 cut(s)	238, 605
BslI	CCNNNNNNNGG	2 cut(s)	210, 478
BsmFI	GGGAC	2 cut(s)	238, 605
BsnI	GGCC	3 cut(s)	5, 179, 387
BsoBI	CYCGRG	1 cut(s)	478
Bsp1286I	GDGCHC	3 cut(s)	55, 159, 564
Bsp13I	TCCGGA	1 cut(s)	532
Bsp143I	GATC	7 cut(s)	24, 69, 213, 364, 474, 489, 553
BspANI	GGCC	3 cut(s)	5, 179, 387
BspEI	TCCGGA	1 cut(s)	532
BspFNI	CGCG	6 cut(s)	90, 92, 240, 332, 384, 512
BspLI	GGNNCC	3 cut(s)	52, 215, 531
BspPI	GGATC	2 cut(s)	208, 221
BspT107I	GGYRCC	1 cut(s)	50
BsrI	ACTGG	1 cut(s)	55
BssECI	CCNNGG	6 cut(s)	146, 174, 325, 435, 589, 622
BssHII	GCGCGC	1 cut(s)	510
BssMI	GATC	7 cut(s)	24, 69, 213, 364, 474, 489, 553
BssNI	GRCGYC	2 cut(s)	201, 402
BssSI	CACGAG	1 cut(s)	158
BssT1I	CCWWGG	2 cut(s)	174, 589
Bst2BI	CACGAG	1 cut(s)	158
Bst2UI	CCWGG	2 cut(s)	148, 624
Bst4CI	ACNGT	2 cut(s)	46, 436
BstACI	GRCGYC	2 cut(s)	201, 402
BstBAI	YACGTR	1 cut(s)	250
BstC8I	GCNNGC	3 cut(s)	467, 512, 564
BstDSI	CCRYGG	1 cut(s)	435
BstF5I	GGATG	2 cut(s)	292, 541
BstFNI	CGCG	6 cut(s)	90, 92, 240, 332, 384, 512
BstH2I	RGCGCY	3 cut(s)	142, 174, 600
BstHHI	GCGC	7 cut(s)	92, 141, 173, 332, 512, 514, 599
BstKTI	GATC	7 cut(s)	27, 72, 216, 367, 477, 492, 556
BstMBI	GATC	7 cut(s)	24, 69, 213, 364, 474, 489, 553
BstMCI	CGRYCG	2 cut(s)	72, 388
BstMWI	GCNNNNNNNGC	4 cut(s)	11, 80, 89, 518
BstNI	CCWGG	2 cut(s)	148, 624
BstPAI	GACNNNNGTC	1 cut(s)	437
BstSCI	CCNGG	3 cut(s)	146, 209, 622
BstSLI	GKGCMC	1 cut(s)	55
BstUI	CGCG	6 cut(s)	90, 92, 240, 332, 384, 512
BstV1I	GCAGC	2 cut(s)	148, 601
BstX2I	RGATCY	1 cut(s)	213
BstYI	RGATCY	1 cut(s)	213
BstZI	CGGCCG	1 cut(s)	385
BsuRI	GGCC	3 cut(s)	5, 179, 387
BtgI	CCRYGG	1 cut(s)	435
BtrI	CACGTC	1 cut(s)	629
BtsCI	GGATG	2 cut(s)	292, 541
Cac8I	GCNNGC	3 cut(s)	467, 512, 564
CciNI	GCGGCCGC	1 cut(s)	385
CfoI	GCGC	7 cut(s)	92, 141, 173, 332, 512, 514, 599
Cfr13I	GGNCC	2 cut(s)	163, 178
CseI	GACGC	6 cut(s)	25, 209, 229, 348, 410, 448
Csp6I	GTAC	2 cut(s)	151, 269
CviAII	CATG	1 cut(s)	451
CviQI	GTAC	2 cut(s)	151, 269
DpnI	GATC	7 cut(s)	26, 71, 215, 366, 476, 491, 555
DpnII	GATC	7 cut(s)	24, 69, 213, 364, 474, 489, 553
EaeI	YGGCCR	1 cut(s)	385
EagI	CGGCCG	1 cut(s)	385
EciI	GGCGGA	1 cut(s)	598
Ecl136II	GAGCTC	1 cut(s)	157
EclXI	CGGCCG	1 cut(s)	385
Eco130I	CCWWGG	2 cut(s)	174, 589
Eco24I	GRGCYC	2 cut(s)	159, 564
Eco47I	GGWCC	1 cut(s)	163
Eco52I	CGGCCG	1 cut(s)	385
Eco53kI	GAGCTC	1 cut(s)	157
Eco88I	CYCGRG	1 cut(s)	478
EcoICRI	GAGCTC	1 cut(s)	157
EcoRII	CCWGG	2 cut(s)	146, 622
EcoT14I	CCWWGG	2 cut(s)	174, 589
EcoT38I	GRGCYC	2 cut(s)	159, 564
ErhI	CCWWGG	2 cut(s)	174, 589
FaeI	CATG	1 cut(s)	454
FaiI	YATR	2 cut(s)	380, 452
FaqI	GGGAC	2 cut(s)	238, 605
FatI	CATG	1 cut(s)	450
FauI	CCCGC	2 cut(s)	88, 571
Fnu4HI	GCNGC	6 cut(s)	137, 142, 385, 388, 612, 615
FokI	GGATG	2 cut(s)	279, 548
FriOI	GRGCYC	2 cut(s)	159, 564
Fsp4HI	GCNGC	6 cut(s)	137, 142, 385, 388, 612, 615
GlaI	GCGC	7 cut(s)	91, 140, 172, 331, 511, 513, 598
GluI	GCNGC	6 cut(s)	137, 142, 385, 388, 612, 615
GsaI	CCCAGC	1 cut(s)	14
HaeII	RGCGCY	3 cut(s)	142, 174, 600
HaeIII	GGCC	3 cut(s)	5, 179, 387
HapII	CCGG	4 cut(s)	166, 211, 533, 573
HgaI	GACGC	6 cut(s)	25, 209, 229, 348, 410, 448
HhaI	GCGC	7 cut(s)	92, 141, 173, 332, 512, 514, 599
Hin1I	GRCGYC	2 cut(s)	201, 402
Hin1II	CATG	1 cut(s)	454
Hin6I	GCGC	7 cut(s)	90, 139, 171, 330, 510, 512, 597
HinP1I	GCGC	7 cut(s)	90, 139, 171, 330, 510, 512, 597
HincII	GTYRAC	1 cut(s)	432
HindII	GTYRAC	1 cut(s)	432
HinfI	GANTC	3 cut(s)	188, 420, 495
HpaII	CCGG	4 cut(s)	166, 211, 533, 573
HphI	GGTGA	5 cut(s)	187, 220, 253, 280, 490
Hpy166II	GTNNAC	2 cut(s)	163, 432
Hpy188I	TCNGA	6 cut(s)	24, 69, 364, 400, 419, 494
Hpy188III	TCNNGA	4 cut(s)	472, 533, 548, 557
Hpy8I	GTNNAC	2 cut(s)	163, 432
Hpy99I	CGWCG	7 cut(s)	19, 50, 203, 404, 428, 464, 554
HpyAV	CCTTC	1 cut(s)	94
HpyCH4III	ACNGT	2 cut(s)	46, 436
HpyCH4IV	ACGT	2 cut(s)	249, 628
HpyF10VI	GCNNNNNNNGC	4 cut(s)	11, 80, 89, 518
HpySE526I	ACGT	2 cut(s)	249, 628
Hsp92I	GRCGYC	2 cut(s)	201, 402
Hsp92II	CATG	1 cut(s)	454
HspAI	GCGC	7 cut(s)	90, 139, 171, 330, 510, 512, 597
Kpn2I	TCCGGA	1 cut(s)	532
Kzo9I	GATC	7 cut(s)	24, 69, 213, 364, 474, 489, 553
LmnI	GCTCC	3 cut(s)	168, 327, 474
Lsp1109I	GCAGC	2 cut(s)	148, 601
MaeII	ACGT	2 cut(s)	249, 628
MaeIII	GTNAC	1 cut(s)	57
MalI	GATC	7 cut(s)	26, 71, 215, 366, 476, 491, 555
MboI	GATC	7 cut(s)	24, 69, 213, 364, 474, 489, 553
MboII	GAAGA	1 cut(s)	439
MflI	RGATCY	1 cut(s)	213
MhlI	GDGCHC	3 cut(s)	55, 159, 564
MluCI	AATT	2 cut(s)	223, 244
MlyI	GAGTC	2 cut(s)	182, 414
MmeI	TCCRAC	2 cut(s)	54, 423
MroI	TCCGGA	1 cut(s)	532
MslI	CAYNNNNRTG	1 cut(s)	449
MspA1I	CMGCKG	1 cut(s)	614
MspI	CCGG	4 cut(s)	166, 211, 533, 573
MspR9I	CCNGG	3 cut(s)	148, 211, 624
MvaI	CCWGG	2 cut(s)	148, 624
MvnI	CGCG	6 cut(s)	90, 92, 240, 332, 384, 512
MwoI	GCNNNNNNNGC	4 cut(s)	11, 80, 89, 518
NciI	CCSGG	1 cut(s)	211
NdeII	GATC	7 cut(s)	24, 69, 213, 364, 474, 489, 553
NlaIII	CATG	1 cut(s)	454
NlaIV	GGNNCC	3 cut(s)	52, 215, 531
NmeAIII	GCCGAG	1 cut(s)	306
NmuCI	GTSAC	1 cut(s)	57
NotI	GCGGCCGC	1 cut(s)	385
PauI	GCGCGC	1 cut(s)	510
PcsI	WCGNNNNNNNCGW	2 cut(s)	423, 432
PfeI	GAWTC	1 cut(s)	495
PfoI	TCCNGGA	1 cut(s)	209
PkrI	GCNGC	6 cut(s)	138, 143, 386, 389, 613, 616
Ple19I	CGATCG	1 cut(s)	72
PleI	GAGTC	2 cut(s)	182, 414
PpsI	GAGTC	2 cut(s)	182, 414
Ppu21I	YACGTR	1 cut(s)	250
PshAI	GACNNNNGTC	1 cut(s)	437
Psp124BI	GAGCTC	1 cut(s)	159
Psp6I	CCWGG	2 cut(s)	146, 622
PspFI	CCCAGC	1 cut(s)	10
PspGI	CCWGG	2 cut(s)	146, 622
PspN4I	GGNNCC	3 cut(s)	52, 215, 531
PspPI	GGNCC	2 cut(s)	163, 178
PsuI	RGATCY	1 cut(s)	213
PteI	GCGCGC	1 cut(s)	510
PvuI	CGATCG	1 cut(s)	72
RsaI	GTAC	2 cut(s)	152, 270
RsaNI	GTAC	2 cut(s)	151, 269
RseI	CAYNNNNRTG	1 cut(s)	449
SacI	GAGCTC	1 cut(s)	159
SatI	GCNGC	6 cut(s)	137, 142, 385, 388, 612, 615
Sau3AI	GATC	7 cut(s)	24, 69, 213, 364, 474, 489, 553
Sau96I	GGNCC	2 cut(s)	163, 178
SchI	GAGTC	2 cut(s)	182, 414
ScrFI	CCNGG	3 cut(s)	148, 211, 624
SduI	GDGCHC	3 cut(s)	55, 159, 564
SetI	ASST	7 cut(s)	159, 233, 252, 351, 543, 605, 631
SinI	GGWCC	1 cut(s)	163
SmiMI	CAYNNNNRTG	1 cut(s)	449
Sse9I	AATT	2 cut(s)	223, 244
SstI	GAGCTC	1 cut(s)	159
StyD4I	CCNGG	3 cut(s)	146, 209, 622
StyI	CCWWGG	2 cut(s)	174, 589
TaaI	ACNGT	2 cut(s)	46, 436
TaiI	ACGT	2 cut(s)	252, 631
TaqI	TCGA	2 cut(s)	355, 549
TasI	AATT	2 cut(s)	223, 244
TauI	GCSGC	4 cut(s)	144, 387, 390, 614
TfiI	GAWTC	1 cut(s)	495
TseFI	GTSAC	1 cut(s)	57
TseI	GCWGC	2 cut(s)	136, 614
Tsp45I	GTSAC	1 cut(s)	57
TspDTI	ATGAA	2 cut(s)	85, 439
TspGWI	ACGGA	1 cut(s)	106
VpaK11BI	GGWCC	1 cut(s)	163
XapI	RAATTY	1 cut(s)	223

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.