Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0007014

Physical Location & Seq

Genomic Coordinates Forward (+)

6984841 .. 6985488

Gene Structure 648 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00285820.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 648 bp

ATGTCCGCCCCAGCGACACTCCCCATAACCAACCCCCAAACGACGTCGTCCGCCGCAGCAGCCCAGTCGCAGCCCCCGATCGCCACGCCCGCCTTCCGCGCGTTCATCTCACGCTTCACCTCCTCGATCCGCTCTGGCTTCTCCCAGCGCCGCCCCTGGTACGAGCTCCTGGACCGGAGCTCCCTGTCCCGACCCGACTCCCTCACCGACGCCTACTCCCGGATCCGCAAGAACTTCACCTATTTCCGCGTCAACTACGTCACCCTCCTCACCGTCGTCCTCGCCCTCTCTCTCCTCACCCACCCGTTCTCCCTCCTCGTCCTGCTCTCCCTCCTCGGCGCGTGGGCGTTCCTCTACCTCTTCCGCTCCTCCGATCAGCCTCTCGTCATCGCCGGGCGCACCTTCTCCGACGCTGAGACTCTCATCGGCCTCGTCGTCTTGACGGTGGTCGTCGTCTTCGTCTCCAGCGTCGGCTCGCTCCTCATCTCGGCTTTGCTGATCGGATTCGCAATTGTTTGCGCACACGGTGCGTTTAGGGTTCCGGAGGATCTGTTCCTTGACGAGCAAGAGCCAGCCAACGCTGGCTTCCTCTCGTTCCTCGGTGGGGCCCAAGCTGCTGCTTCCGCCGCCGCCGCGGCGCGTGTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005783 GO:0005794 GO:0005802 GO:0006810 GO:0008150 GO:0012505 GO:0016192 GO:0031410 GO:0031982 GO:0031984 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0051179 GO:0051234 GO:0097708 GO:0098791

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PRA1

Protein Analysis

215

Amino Acids

23.06

Weight (kDa)

9.42

Isoelectric Point (pI)

43.08

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PRA1	PF03208	46 - 189	4.3e-49	PRA1 family protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007014)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G40380 AT3G56110 AT3G56110 AT3G56110 AT3G56110 AT5G05380 AT5G05380 AT5G05380 AT5G05380
fragaria_vesca	FvH4_7g25360
malus_domestica	MD01G1159700.v1.1 MD07G1228200.v1.1
prunus_persica	Prupe.2G257700_v2.0.a1
pyrus_communis	pycom01g17610 pycom07g20660
rosa_chinensis	RchiOBHm_Chr1g0371281
rosa_laevigata	RLG00000026974
rosa_multiflora	Rmu_co8217190.1_g000001
rosa_roxburghii	Rroxscaffold_4G00285820
rosa_rugosa	Rorug01G0362600
rosa_samantha	Rh1AG372700 Rh1BG336200 Rh1CG349600 Rh1DG367300
rosa_wichuraiana	Rw1G032780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	47
Acc16I	TGCGCA	1 cut(s)	520
AccBSI	CCGCTC	2 cut(s)	132, 366
AccII	CGCG	6 cut(s)	99, 101, 249, 341, 635, 640
AccIII	TCCGGA	1 cut(s)	541
AclWI	GGATC	4 cut(s)	121, 217, 230, 555
AcyI	GRCGYC	2 cut(s)	44, 210
AdeI	CACNNNGTG	1 cut(s)	527
AfaI	GTAC	1 cut(s)	161
AfiI	CCNNNNNNNGG	3 cut(s)	219, 487, 604
AjnI	CCWGG	2 cut(s)	155, 168
AjuI	GAANNNNNNNTTGG	2 cut(s)	569, 601
AloI	GAACNNNNNNTCC	2 cut(s)	536, 568
AluBI	AGCT	3 cut(s)	166, 180, 614
AluI	AGCT	3 cut(s)	166, 180, 614
Alw21I	GWGCWC	2 cut(s)	168, 182
Alw26I	GTCTC	2 cut(s)	410, 466
AlwI	GGATC	4 cut(s)	121, 217, 230, 555
Aor13HI	TCCGGA	1 cut(s)	541
AoxI	GGCC	2 cut(s)	427, 606
ApaI	GGGCCC	1 cut(s)	610
ApeKI	GCWGC	5 cut(s)	56, 59, 70, 614, 617
AspLEI	GCGC	6 cut(s)	101, 150, 341, 399, 521, 640
AspS9I	GGNCC	3 cut(s)	172, 606, 607
AsuC2I	CCSGG	2 cut(s)	220, 394
AsuHPI	GGTGA	6 cut(s)	109, 196, 229, 253, 262, 289
AvaII	GGWCC	1 cut(s)	172
BaeGI	GKGCMC	1 cut(s)	610
BamHI	GGATCC	1 cut(s)	222
BanII	GRGCYC	3 cut(s)	168, 182, 610
BbsI	GAAGAC	1 cut(s)	448
Bbv12I	GWGCWC	2 cut(s)	168, 182
BbvI	GCAGC	5 cut(s)	68, 71, 82, 601, 604
BcgI	CGANNNNNNTGC	2 cut(s)	48, 82
BciT130I	CCWGG	2 cut(s)	157, 170
BcnI	CCSGG	2 cut(s)	220, 394
BcoDI	GTCTC	2 cut(s)	410, 466
BfoI	RGCGCY	1 cut(s)	151
BglI	GCCNNNNNGGC	1 cut(s)	635
Bme1390I	CCNGG	4 cut(s)	157, 170, 220, 394
Bme18I	GGWCC	1 cut(s)	172
BmgT120I	GGNCC	3 cut(s)	172, 606, 607
BmiI	GGNNCC	4 cut(s)	224, 540, 607, 608
BmrFI	CCNGG	4 cut(s)	157, 170, 220, 394
BmrI	ACTGGG	1 cut(s)	58
BmuI	ACTGGG	1 cut(s)	58
BoxI	GACNNNNGTC	1 cut(s)	446
BpiI	GAAGAC	1 cut(s)	448
BpmI	CTGGAG	1 cut(s)	448
BpuMI	CCSGG	2 cut(s)	220, 394
BsaHI	GRCGYC	2 cut(s)	44, 210
BsaJI	CCNNGG	4 cut(s)	155, 334, 598, 633
BsaWI	WCCGGW	2 cut(s)	174, 541
BsaXI	ACNNNNNCTCC	8 cut(s)	164, 194, 200, 230, 293, 323, 536, 566
Bsc4I	CCNNNNNNNGG	3 cut(s)	219, 487, 604
Bse1I	ACTGG	1 cut(s)	64
BseAI	TCCGGA	1 cut(s)	541
BseBI	CCWGG	2 cut(s)	157, 170
BseDI	CCNNGG	4 cut(s)	155, 334, 598, 633
BseLI	CCNNNNNNNGG	3 cut(s)	219, 487, 604
BseMII	CTCAG	1 cut(s)	405
BseNI	ACTGG	1 cut(s)	64
BseRI	GAGGAG	7 cut(s)	112, 257, 284, 305, 323, 358, 470
BseSI	GKGCMC	1 cut(s)	610
BseXI	GCAGC	5 cut(s)	68, 71, 82, 601, 604
BseYI	CCCAGC	2 cut(s)	10, 144
Bsh1236I	CGCG	6 cut(s)	99, 101, 249, 341, 635, 640
Bsh1285I	CGRYCG	1 cut(s)	81
BshFI	GGCC	2 cut(s)	429, 608
BsiEI	CGRYCG	1 cut(s)	81
BsiHKAI	GWGCWC	2 cut(s)	168, 182
BsiSI	CCGG	4 cut(s)	175, 220, 393, 542
BslFI	GGGAC	1 cut(s)	172
BslI	CCNNNNNNNGG	3 cut(s)	219, 487, 604
BsmAI	GTCTC	2 cut(s)	410, 466
BsmBI	CGTCTC	1 cut(s)	466
BsmFI	GGGAC	1 cut(s)	172
BsnI	GGCC	2 cut(s)	429, 608
Bsp120I	GGGCCC	1 cut(s)	606
Bsp1286I	GDGCHC	3 cut(s)	168, 182, 610
Bsp13I	TCCGGA	1 cut(s)	541
Bsp143I	GATC	6 cut(s)	78, 126, 222, 373, 498, 547
BspANI	GGCC	2 cut(s)	429, 608
BspCNI	CTCAG	1 cut(s)	406
BspEI	TCCGGA	1 cut(s)	541
BspFNI	CGCG	6 cut(s)	99, 101, 249, 341, 635, 640
BspLI	GGNNCC	4 cut(s)	224, 540, 607, 608
BspPI	GGATC	4 cut(s)	121, 217, 230, 555
BsrBI	CCGCTC	2 cut(s)	132, 366
BsrI	ACTGG	1 cut(s)	64
BssECI	CCNNGG	4 cut(s)	155, 334, 598, 633
BssMI	GATC	6 cut(s)	78, 126, 222, 373, 498, 547
BssNI	GRCGYC	2 cut(s)	44, 210
Bst2UI	CCWGG	2 cut(s)	157, 170
Bst4CI	ACNGT	3 cut(s)	274, 445, 527
Bst6I	CTCTTC	1 cut(s)	365
BstACI	GRCGYC	2 cut(s)	44, 210
BstAPI	GCANNNNNTGC	1 cut(s)	527
BstC8I	GCNNGC	4 cut(s)	90, 476, 573, 583
BstDEI	CTNAG	1 cut(s)	414
BstDSI	CCRYGG	1 cut(s)	633
BstFNI	CGCG	6 cut(s)	99, 101, 249, 341, 635, 640
BstH2I	RGCGCY	1 cut(s)	151
BstHHI	GCGC	6 cut(s)	101, 150, 341, 399, 521, 640
BstKTI	GATC	6 cut(s)	81, 129, 225, 376, 501, 550
BstMAI	GTCTC	2 cut(s)	410, 466
BstMBI	GATC	6 cut(s)	78, 126, 222, 373, 498, 547
BstMCI	CGRYCG	1 cut(s)	81
BstMWI	GCNNNNNNNGC	9 cut(s)	59, 89, 98, 527, 614, 623, 626, 632, 635
BstNI	CCWGG	2 cut(s)	157, 170
BstPAI	GACNNNNGTC	1 cut(s)	446
BstSCI	CCNGG	4 cut(s)	155, 168, 218, 392
BstSLI	GKGCMC	1 cut(s)	610
BstUI	CGCG	6 cut(s)	99, 101, 249, 341, 635, 640
BstV1I	GCAGC	5 cut(s)	68, 71, 82, 601, 604
BstV2I	GAAGAC	1 cut(s)	448
BstX2I	RGATCY	2 cut(s)	222, 547
BstYI	RGATCY	2 cut(s)	222, 547
BsuRI	GGCC	2 cut(s)	429, 608
BtgI	CCRYGG	1 cut(s)	633
BtgZI	GCGATG	1 cut(s)	373
Cac8I	GCNNGC	4 cut(s)	90, 476, 573, 583
CfoI	GCGC	6 cut(s)	101, 150, 341, 399, 521, 640
Cfr13I	GGNCC	3 cut(s)	172, 606, 607
Cfr42I	CCGCGG	1 cut(s)	636
CseI	GACGC	4 cut(s)	218, 238, 419, 457
Csp6I	GTAC	1 cut(s)	160
CviQI	GTAC	1 cut(s)	160
DdeI	CTNAG	1 cut(s)	414
DpnI	GATC	6 cut(s)	80, 128, 224, 375, 500, 549
DpnII	GATC	6 cut(s)	78, 126, 222, 373, 498, 547
DraIII	CACNNNGTG	1 cut(s)	527
Eam1104I	CTCTTC	1 cut(s)	365
EarI	CTCTTC	1 cut(s)	365
EciI	GGCGGA	2 cut(s)	40, 613
Ecl136II	GAGCTC	2 cut(s)	166, 180
Eco24I	GRGCYC	3 cut(s)	168, 182, 610
Eco47I	GGWCC	1 cut(s)	172
Eco53kI	GAGCTC	2 cut(s)	166, 180
EcoICRI	GAGCTC	2 cut(s)	166, 180
EcoO109I	RGGNCCY	1 cut(s)	606
EcoRII	CCWGG	2 cut(s)	155, 168
EcoT38I	GRGCYC	3 cut(s)	168, 182, 610
Esp3I	CGTCTC	1 cut(s)	466
FaiI	YATR	1 cut(s)	26
FaqI	GGGAC	1 cut(s)	172
FauI	CCCGC	1 cut(s)	97
FriOI	GRGCYC	3 cut(s)	168, 182, 610
FspI	TGCGCA	1 cut(s)	520
GlaI	GCGC	6 cut(s)	100, 149, 340, 398, 520, 639
GsaI	CCCAGC	2 cut(s)	14, 148
GsuI	CTGGAG	1 cut(s)	448
HaeII	RGCGCY	1 cut(s)	151
HaeIII	GGCC	2 cut(s)	429, 608
HapII	CCGG	4 cut(s)	175, 220, 393, 542
HgaI	GACGC	4 cut(s)	218, 238, 419, 457
HhaI	GCGC	6 cut(s)	101, 150, 341, 399, 521, 640
Hin1I	GRCGYC	2 cut(s)	44, 210
Hin6I	GCGC	6 cut(s)	99, 148, 339, 397, 519, 638
HinP1I	GCGC	6 cut(s)	99, 148, 339, 397, 519, 638
HincII	GTYRAC	1 cut(s)	253
HindII	GTYRAC	1 cut(s)	253
HinfI	GANTC	3 cut(s)	197, 418, 504
HpaII	CCGG	4 cut(s)	175, 220, 393, 542
HphI	GGTGA	6 cut(s)	109, 196, 229, 253, 262, 289
Hpy166II	GTNNAC	1 cut(s)	253
Hpy188I	TCNGA	3 cut(s)	373, 409, 503
Hpy188III	TCNNGA	3 cut(s)	189, 439, 542
Hpy8I	GTNNAC	1 cut(s)	253
Hpy99I	CGWCG	8 cut(s)	46, 49, 212, 278, 413, 437, 455, 473
HpyAV	CCTTC	2 cut(s)	103, 412
HpyCH4III	ACNGT	3 cut(s)	274, 445, 527
HpyCH4IV	ACGT	2 cut(s)	44, 258
HpyF10VI	GCNNNNNNNGC	9 cut(s)	59, 89, 98, 527, 614, 623, 626, 632, 635
HpyF3I	CTNAG	1 cut(s)	414
HpySE526I	ACGT	2 cut(s)	44, 258
Hsp92I	GRCGYC	2 cut(s)	44, 210
HspAI	GCGC	6 cut(s)	99, 148, 339, 397, 519, 638
Kpn2I	TCCGGA	1 cut(s)	541
KspI	CCGCGG	1 cut(s)	636
Kzo9I	GATC	6 cut(s)	78, 126, 222, 373, 498, 547
LmnI	GCTCC	5 cut(s)	171, 177, 185, 371, 483
Lsp1109I	GCAGC	5 cut(s)	68, 71, 82, 601, 604
MaeII	ACGT	2 cut(s)	44, 258
MaeIII	GTNAC	1 cut(s)	259
MalI	GATC	6 cut(s)	80, 128, 224, 375, 500, 549
MbiI	CCGCTC	2 cut(s)	132, 366
MboI	GATC	6 cut(s)	78, 126, 222, 373, 498, 547
MboII	GAAGA	2 cut(s)	352, 448
MfeI	CAATTG	1 cut(s)	510
MflI	RGATCY	2 cut(s)	222, 547
MhlI	GDGCHC	3 cut(s)	168, 182, 610
MluCI	AATT	1 cut(s)	510
MlyI	GAGTC	2 cut(s)	191, 412
MmeI	TCCRAC	1 cut(s)	432
MroI	TCCGGA	1 cut(s)	541
MspA1I	CMGCKG	1 cut(s)	635
MspI	CCGG	4 cut(s)	175, 220, 393, 542
MspR9I	CCNGG	4 cut(s)	157, 170, 220, 394
MunI	CAATTG	1 cut(s)	510
MvaI	CCWGG	2 cut(s)	157, 170
MvnI	CGCG	6 cut(s)	99, 101, 249, 341, 635, 640
MwoI	GCNNNNNNNGC	9 cut(s)	59, 89, 98, 527, 614, 623, 626, 632, 635
NciI	CCSGG	2 cut(s)	220, 394
NdeII	GATC	6 cut(s)	78, 126, 222, 373, 498, 547
NlaIV	GGNNCC	4 cut(s)	224, 540, 607, 608
NmeAIII	GCCGAG	2 cut(s)	315, 467
NmuCI	GTSAC	1 cut(s)	259
NsbI	TGCGCA	1 cut(s)	520
PcsI	WCGNNNNNNNCGW	4 cut(s)	74, 432, 456, 465
PfeI	GAWTC	1 cut(s)	504
PflFI	GACNNNGTC	1 cut(s)	46
PfoI	TCCNGGA	2 cut(s)	168, 218
Ple19I	CGATCG	1 cut(s)	81
PleI	GAGTC	2 cut(s)	191, 412
PpsI	GAGTC	2 cut(s)	191, 412
PshAI	GACNNNNGTC	1 cut(s)	446
Psp124BI	GAGCTC	2 cut(s)	168, 182
Psp6I	CCWGG	2 cut(s)	155, 168
PspFI	CCCAGC	2 cut(s)	10, 144
PspGI	CCWGG	2 cut(s)	155, 168
PspN4I	GGNNCC	4 cut(s)	224, 540, 607, 608
PspOMI	GGGCCC	1 cut(s)	606
PspPI	GGNCC	3 cut(s)	172, 606, 607
PsuI	RGATCY	2 cut(s)	222, 547
PsyI	GACNNNGTC	1 cut(s)	46
PvuI	CGATCG	1 cut(s)	81
RsaI	GTAC	1 cut(s)	161
RsaNI	GTAC	1 cut(s)	160
SacI	GAGCTC	2 cut(s)	168, 182
SacII	CCGCGG	1 cut(s)	636
Sau3AI	GATC	6 cut(s)	78, 126, 222, 373, 498, 547
Sau96I	GGNCC	3 cut(s)	172, 606, 607
SchI	GAGTC	2 cut(s)	191, 412
ScrFI	CCNGG	4 cut(s)	157, 170, 220, 394
SduI	GDGCHC	3 cut(s)	168, 182, 610
SetI	ASST	9 cut(s)	47, 122, 168, 182, 242, 261, 360, 404, 616
Sfr303I	CCGCGG	1 cut(s)	636
SgrBI	CCGCGG	1 cut(s)	636
SinI	GGWCC	1 cut(s)	172
Sse9I	AATT	1 cut(s)	510
SstI	GAGCTC	2 cut(s)	168, 182
StyD4I	CCNGG	4 cut(s)	155, 168, 218, 392
TaaI	ACNGT	3 cut(s)	274, 445, 527
TaiI	ACGT	2 cut(s)	47, 261
TaqI	TCGA	1 cut(s)	125
TasI	AATT	1 cut(s)	510
TauI	GCSGC	6 cut(s)	56, 153, 629, 632, 635, 638
TfiI	GAWTC	1 cut(s)	504
TseFI	GTSAC	1 cut(s)	259
TseI	GCWGC	5 cut(s)	56, 59, 70, 614, 617
Tsp45I	GTSAC	1 cut(s)	259
TspDTI	ATGAA	1 cut(s)	94
Tth111I	GACNNNGTC	1 cut(s)	46
VpaK11BI	GGWCC	1 cut(s)	172
ZraI	GACGTC	1 cut(s)	45

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.