Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0007014

Physical Location & Seq

Genomic Coordinates Reverse (-)

47792953 .. 47793390

Gene Structure 438 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0362600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 438 bp

ATGTGCACGTTGGAGAAGAAAGGCGACATCTTCATCCTCACGCTAACTGGGCCAGGTGAGCATAGGCTCAACCCAACTCTACTGGATGCAATCCAATCCGCTTTAAACACCGTCCGAGCCGCCGCCACGTCATCCTCCGTAGTCCTGATCACCACCGCACACGGCAAATTCTTCTCCAACGGCTTCGATCTAGACTGGGCCGGATCGGACAAAGCCCAGCGCAAGCTCATGGCCTCGAAGCTCCGGCCGGTCGTGGCCTACTTCATCTCCCTCCCGTTGCCGACCATCGCTGCCGTCACCGGCCACGCCTCCGCCGCCGGCTTCATCCTCGCGCGGTGCCACGACTATGTTTTGATGAGGAAGGACAGGGGGGTTCGTCTACATGAGCGAGATGGACATCGCGCTTGTCATTCCGGCTTGGGTTCACGCGCTGATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005783 GO:0005794 GO:0005802 GO:0006810 GO:0008150 GO:0012505 GO:0016192 GO:0031410 GO:0031982 GO:0031984 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0051179 GO:0051234 GO:0097708 GO:0098791

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PRA1

Protein Analysis

145

Amino Acids

15.64

Weight (kDa)

9.6

Isoelectric Point (pI)

25.63

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ECH_1	PF00378	7 - 120	3e-13	Enoyl-CoA hydratase/isomerase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007014)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G40380 AT3G56110 AT3G56110 AT3G56110 AT3G56110 AT5G05380 AT5G05380 AT5G05380 AT5G05380
fragaria_vesca	FvH4_7g25360
malus_domestica	MD01G1159700.v1.1 MD07G1228200.v1.1
prunus_persica	Prupe.2G257700_v2.0.a1
pyrus_communis	pycom01g17610 pycom07g20660
rosa_chinensis	RchiOBHm_Chr1g0371281
rosa_laevigata	RLG00000026974
rosa_multiflora	Rmu_co8217190.1_g000001
rosa_roxburghii	Rroxscaffold_4G00285820
rosa_rugosa	Rorug01G0362600
rosa_samantha	Rh1AG372700 Rh1BG336200 Rh1CG349600 Rh1DG367300
rosa_wichuraiana	Rw1G032780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	336
AccI	GTMKAC	1 cut(s)	379
AccII	CGCG	4 cut(s)	332, 334, 402, 429
AciI	CCGC	7 cut(s)	99, 120, 123, 156, 312, 315, 334
AclWI	GGATC	1 cut(s)	211
AcoI	YGGCCR	2 cut(s)	245, 301
AcsI	RAATTY	1 cut(s)	167
AjiI	CACGTC	1 cut(s)	129
AjnI	CCWGG	1 cut(s)	52
AluBI	AGCT	2 cut(s)	226, 241
AluI	AGCT	2 cut(s)	226, 241
Alw21I	GWGCWC	1 cut(s)	8
Alw44I	GTGCAC	1 cut(s)	4
AlwI	GGATC	1 cut(s)	211
AoxI	GGCC	6 cut(s)	50, 198, 231, 245, 255, 301
ApaLI	GTGCAC	1 cut(s)	4
ApeKI	GCWGC	1 cut(s)	290
ApoI	RAATTY	1 cut(s)	167
AspLEI	GCGC	4 cut(s)	222, 334, 404, 431
AspS9I	GGNCC	2 cut(s)	50, 198
AsuHPI	GGTGA	3 cut(s)	68, 142, 289
BaeGI	GKGCMC	1 cut(s)	8
BanI	GGYRCC	1 cut(s)	336
Bbv12I	GWGCWC	1 cut(s)	8
BbvI	GCAGC	1 cut(s)	277
BccI	CCATC	2 cut(s)	293, 386
BceAI	ACGGC	3 cut(s)	178, 196, 278
BciT130I	CCWGG	1 cut(s)	54
BclI	TGATCA	1 cut(s)	147
BfaI	CTAG	1 cut(s)	191
BisI	GCNGC	4 cut(s)	120, 123, 291, 315
BlsI	GCNGC	4 cut(s)	121, 124, 292, 316
Bme1390I	CCNGG	1 cut(s)	54
BmgBI	CACGTC	1 cut(s)	129
BmgT120I	GGNCC	2 cut(s)	50, 198
BmiI	GGNNCC	1 cut(s)	338
BmrFI	CCNGG	1 cut(s)	54
BmrI	ACTGGG	2 cut(s)	57, 205
BmsI	GCATC	1 cut(s)	76
BmuI	ACTGGG	2 cut(s)	57, 205
BsaBI	GATNNNNATC	1 cut(s)	396
BsaXI	ACNNNNNCTCC	2 cut(s)	251, 281
Bse118I	RCCGGY	3 cut(s)	247, 299, 317
Bse1I	ACTGG	3 cut(s)	52, 87, 200
Bse8I	GATNNNNATC	1 cut(s)	396
BseBI	CCWGG	1 cut(s)	54
BseGI	GGATG	4 cut(s)	33, 91, 131, 324
BseJI	GATNNNNATC	1 cut(s)	396
BseNI	ACTGG	3 cut(s)	52, 87, 200
BseSI	GKGCMC	1 cut(s)	8
BseX3I	CGGCCG	1 cut(s)	245
BseXI	GCAGC	1 cut(s)	277
BseYI	CCCAGC	1 cut(s)	216
Bsh1236I	CGCG	4 cut(s)	332, 334, 402, 429
Bsh1285I	CGRYCG	2 cut(s)	248, 252
BshFI	GGCC	6 cut(s)	52, 200, 233, 247, 257, 303
BshNI	GGYRCC	1 cut(s)	336
BsiEI	CGRYCG	2 cut(s)	248, 252
BsiHKAI	GWGCWC	1 cut(s)	8
BsiSI	CCGG	6 cut(s)	201, 244, 248, 300, 318, 414
BsnI	GGCC	6 cut(s)	52, 200, 233, 247, 257, 303
Bsp1286I	GDGCHC	1 cut(s)	8
Bsp143I	GATC	3 cut(s)	147, 187, 203
BspACI	CCGC	7 cut(s)	99, 120, 123, 156, 312, 315, 334
BspANI	GGCC	6 cut(s)	52, 200, 233, 247, 257, 303
BspFNI	CGCG	4 cut(s)	332, 334, 402, 429
BspLI	GGNNCC	1 cut(s)	338
BspPI	GGATC	1 cut(s)	211
BspT107I	GGYRCC	1 cut(s)	336
BsrFI	RCCGGY	3 cut(s)	247, 299, 317
BsrI	ACTGG	3 cut(s)	52, 87, 200
BssAI	RCCGGY	3 cut(s)	247, 299, 317
BssMI	GATC	3 cut(s)	147, 187, 203
Bst2UI	CCWGG	1 cut(s)	54
Bst4CI	ACNGT	1 cut(s)	112
BstC8I	GCNNGC	2 cut(s)	224, 319
BstF5I	GGATG	4 cut(s)	33, 91, 131, 324
BstFNI	CGCG	4 cut(s)	332, 334, 402, 429
BstHHI	GCGC	4 cut(s)	222, 334, 404, 431
BstKTI	GATC	3 cut(s)	150, 190, 206
BstMBI	GATC	3 cut(s)	147, 187, 203
BstMCI	CGRYCG	2 cut(s)	248, 252
BstMWI	GCNNNNNNNGC	3 cut(s)	49, 58, 314
BstNI	CCWGG	1 cut(s)	54
BstSCI	CCNGG	1 cut(s)	52
BstSLI	GKGCMC	1 cut(s)	8
BstUI	CGCG	4 cut(s)	332, 334, 402, 429
BstV1I	GCAGC	1 cut(s)	277
BstZI	CGGCCG	1 cut(s)	245
BsuRI	GGCC	6 cut(s)	52, 200, 233, 247, 257, 303
BtgZI	GCGATG	2 cut(s)	271, 383
BtrI	CACGTC	1 cut(s)	129
BtsCI	GGATG	4 cut(s)	33, 91, 131, 324
Cac8I	GCNNGC	2 cut(s)	224, 319
CfoI	GCGC	4 cut(s)	222, 334, 404, 431
Cfr10I	RCCGGY	3 cut(s)	247, 299, 317
Cfr13I	GGNCC	2 cut(s)	50, 198
CviAII	CATG	2 cut(s)	229, 383
DpnI	GATC	3 cut(s)	149, 189, 205
DpnII	GATC	3 cut(s)	147, 187, 203
DraI	TTTAAA	1 cut(s)	105
EaeI	YGGCCR	2 cut(s)	245, 301
EagI	CGGCCG	1 cut(s)	245
EciI	GGCGGA	1 cut(s)	301
EclXI	CGGCCG	1 cut(s)	245
Eco52I	CGGCCG	1 cut(s)	245
EcoRII	CCWGG	1 cut(s)	52
FaeI	CATG	2 cut(s)	232, 386
FaiI	YATR	4 cut(s)	63, 230, 348, 384
FatI	CATG	2 cut(s)	228, 382
FbaI	TGATCA	1 cut(s)	147
FblI	GTMKAC	1 cut(s)	379
Fnu4HI	GCNGC	4 cut(s)	120, 123, 291, 315
FokI	GGATG	4 cut(s)	20, 98, 118, 311
Fsp4HI	GCNGC	4 cut(s)	120, 123, 291, 315
FspBI	CTAG	1 cut(s)	191
GlaI	GCGC	4 cut(s)	221, 333, 403, 430
GluI	GCNGC	4 cut(s)	120, 123, 291, 315
GsaI	CCCAGC	1 cut(s)	220
HaeIII	GGCC	6 cut(s)	52, 200, 233, 247, 257, 303
HapII	CCGG	6 cut(s)	201, 244, 248, 300, 318, 414
HhaI	GCGC	4 cut(s)	222, 334, 404, 431
Hin1II	CATG	2 cut(s)	232, 386
Hin6I	GCGC	4 cut(s)	220, 332, 402, 429
HinP1I	GCGC	4 cut(s)	220, 332, 402, 429
HpaII	CCGG	6 cut(s)	201, 244, 248, 300, 318, 414
HphI	GGTGA	3 cut(s)	68, 142, 289
Hpy166II	GTNNAC	3 cut(s)	6, 380, 425
Hpy188I	TCNGA	2 cut(s)	116, 208
Hpy188III	TCNNGA	2 cut(s)	145, 191
Hpy8I	GTNNAC	3 cut(s)	6, 380, 425
HpyAV	CCTTC	1 cut(s)	355
HpyCH4III	ACNGT	1 cut(s)	112
HpyCH4IV	ACGT	2 cut(s)	8, 128
HpyCH4V	TGCA	2 cut(s)	6, 89
HpyF10VI	GCNNNNNNNGC	3 cut(s)	49, 58, 314
HpySE526I	ACGT	2 cut(s)	8, 128
Hsp92II	CATG	2 cut(s)	232, 386
HspAI	GCGC	4 cut(s)	220, 332, 402, 429
KroI	GCCGGC	1 cut(s)	317
KroNI	GCCGGC	1 cut(s)	319
Ksp22I	TGATCA	1 cut(s)	147
Kzo9I	GATC	3 cut(s)	147, 187, 203
LmnI	GCTCC	1 cut(s)	246
Lsp1109I	GCAGC	1 cut(s)	277
LweI	GCATC	1 cut(s)	76
MaeI	CTAG	1 cut(s)	191
MaeII	ACGT	2 cut(s)	8, 128
MaeIII	GTNAC	1 cut(s)	295
MalI	GATC	3 cut(s)	149, 189, 205
MboI	GATC	3 cut(s)	147, 187, 203
MboII	GAAGA	3 cut(s)	22, 28, 163
MhlI	GDGCHC	1 cut(s)	8
MluCI	AATT	1 cut(s)	167
MmeI	TCCRAC	1 cut(s)	201
MnlI	CCTC	7 cut(s)	47, 145, 244, 281, 319, 338, 351
MroNI	GCCGGC	1 cut(s)	317
MseI	TTAA	2 cut(s)	104, 436
MslI	CAYNNNNRTG	1 cut(s)	345
MspI	CCGG	6 cut(s)	201, 244, 248, 300, 318, 414
MspR9I	CCNGG	1 cut(s)	54
MvaI	CCWGG	1 cut(s)	54
MvnI	CGCG	4 cut(s)	332, 334, 402, 429
MwoI	GCNNNNNNNGC	3 cut(s)	49, 58, 314
NaeI	GCCGGC	1 cut(s)	319
NdeII	GATC	3 cut(s)	147, 187, 203
NgoMIV	GCCGGC	1 cut(s)	317
NlaIII	CATG	2 cut(s)	232, 386
NlaIV	GGNNCC	1 cut(s)	338
NmuCI	GTSAC	1 cut(s)	295
PdiI	GCCGGC	1 cut(s)	319
PkrI	GCNGC	4 cut(s)	121, 124, 292, 316
Psp6I	CCWGG	1 cut(s)	52
PspFI	CCCAGC	1 cut(s)	216
PspGI	CCWGG	1 cut(s)	52
PspN4I	GGNNCC	1 cut(s)	338
PspPI	GGNCC	2 cut(s)	50, 198
RseI	CAYNNNNRTG	1 cut(s)	345
SaqAI	TTAA	2 cut(s)	104, 436
SatI	GCNGC	4 cut(s)	120, 123, 291, 315
Sau3AI	GATC	3 cut(s)	147, 187, 203
Sau96I	GGNCC	2 cut(s)	50, 198
ScrFI	CCNGG	1 cut(s)	54
SduI	GDGCHC	1 cut(s)	8
SetI	ASST	5 cut(s)	11, 58, 131, 228, 243
SfaNI	GCATC	1 cut(s)	76
SmiMI	CAYNNNNRTG	1 cut(s)	345
Sse9I	AATT	1 cut(s)	167
SsiI	CCGC	7 cut(s)	99, 120, 123, 156, 312, 315, 334
SspMI	CTAG	1 cut(s)	191
StyD4I	CCNGG	1 cut(s)	52
TaaI	ACNGT	1 cut(s)	112
TaiI	ACGT	2 cut(s)	11, 131
TaqI	TCGA	2 cut(s)	186, 236
TasI	AATT	1 cut(s)	167
TauI	GCSGC	3 cut(s)	122, 125, 317
Tru1I	TTAA	2 cut(s)	104, 436
Tru9I	TTAA	2 cut(s)	104, 436
TseFI	GTSAC	1 cut(s)	295
TseI	GCWGC	1 cut(s)	290
Tsp45I	GTSAC	1 cut(s)	295
TspDTI	ATGAA	3 cut(s)	22, 253, 313
TspGWI	ACGGA	1 cut(s)	127
VneI	GTGCAC	1 cut(s)	4
XapI	RAATTY	1 cut(s)	167
XbaI	TCTAGA	1 cut(s)	190
XmiI	GTMKAC	1 cut(s)	379
XspI	CTAG	1 cut(s)	191

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.