Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr1

Orthogroup ID

OG0007014

Physical Location & Seq

Genomic Coordinates Reverse (-)

16837700 .. 16838191

Gene Structure 492 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom01g17610.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 492 bp

ATGGCCGCCCCACCGACACTCCCGATCTCCAACTCCCAAACGGCCGTCGCCGCCCAATCGCAGCCTCCCATTGCCACGCCGGCCTTCCGCGCGTTCATCTCGCGCTTATCCTCCTCCGTCCGCCACGGCTTCTCGCAGCGCCGCCCCTGGTACGAGCTCGTGGACCGGAGCGCCTTGGCCCGACCAGGCTCCCTCACCGAGGCCTACTCCCGGATCCGCAAGAATTTCACCTACTTTCGCGTCAACTACGTTTCCCTACTCACCCTCGTAATCGCCCTCTCTCTCCTCACCCATCCTTTCTCTCTCGTCGTCCTGCTCTCCCTCCTCGGCGCGTGGGCTTTCCTCTACCTGTTTCGGGCGTCCGATCAGGCCCTGGTCATCCTCGGCCGCACTTTCTCCGACGCGGAAACATTAATCGGACTCGTCGTGCTGACCGTGGTTGTCGTCTTCATGTCCAGCGTCGGCTCGCTCCTGATCGATCGGCTTTGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005783 GO:0005794 GO:0005802 GO:0006810 GO:0008150 GO:0012505 GO:0016192 GO:0031410 GO:0031982 GO:0031984 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0051179 GO:0051234 GO:0097708 GO:0098791

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PRA1

Protein Analysis

164

Amino Acids

17.92

Weight (kDa)

10.52

Isoelectric Point (pI)

40.5

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PRA1	PF03208	43 - 159	2.8e-36	PRA1 family protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007014)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G40380 AT3G56110 AT3G56110 AT3G56110 AT3G56110 AT5G05380 AT5G05380 AT5G05380 AT5G05380
fragaria_vesca	FvH4_7g25360
malus_domestica	MD01G1159700.v1.1 MD07G1228200.v1.1
prunus_persica	Prupe.2G257700_v2.0.a1
pyrus_communis	pycom01g17610 pycom07g20660
rosa_chinensis	RchiOBHm_Chr1g0371281
rosa_laevigata	RLG00000026974
rosa_multiflora	Rmu_co8217190.1_g000001
rosa_roxburghii	Rroxscaffold_4G00285820
rosa_rugosa	Rorug01G0362600
rosa_samantha	Rh1AG372700 Rh1BG336200 Rh1CG349600 Rh1DG367300
rosa_wichuraiana	Rw1G032780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	6 cut(s)	90, 92, 103, 240, 332, 404
AciI	CCGC	8 cut(s)	6, 51, 88, 121, 142, 217, 388, 404
AclWI	GGATC	2 cut(s)	208, 221
AcoI	YGGCCR	3 cut(s)	3, 42, 385
AcsI	RAATTY	1 cut(s)	223
AcyI	GRCGYC	1 cut(s)	359
AfaI	GTAC	1 cut(s)	152
AfiI	CCNNNNNNNGG	3 cut(s)	199, 210, 355
AjnI	CCWGG	3 cut(s)	146, 184, 372
AluBI	AGCT	1 cut(s)	157
AluI	AGCT	1 cut(s)	157
Alw21I	GWGCWC	1 cut(s)	159
AlwI	GGATC	2 cut(s)	208, 221
AlwNI	CAGNNNCTG	1 cut(s)	373
AoxI	GGCC	7 cut(s)	3, 42, 81, 177, 201, 369, 385
ApeKI	GCWGC	2 cut(s)	61, 136
ApoI	RAATTY	1 cut(s)	223
AseI	ATTAAT	1 cut(s)	413
AspLEI	GCGC	5 cut(s)	92, 105, 141, 173, 332
AspS9I	GGNCC	3 cut(s)	163, 178, 370
AsuC2I	CCSGG	1 cut(s)	211
AsuHPI	GGTGA	4 cut(s)	187, 220, 253, 280
AvaII	GGWCC	1 cut(s)	163
BamHI	GGATCC	1 cut(s)	213
BanII	GRGCYC	1 cut(s)	159
BauI	CACGAG	1 cut(s)	158
BbsI	GAAGAC	1 cut(s)	439
Bbv12I	GWGCWC	1 cut(s)	159
BbvI	GCAGC	2 cut(s)	73, 148
BccI	CCATC	1 cut(s)	300
BceAI	ACGGC	3 cut(s)	29, 57, 142
BciT130I	CCWGG	3 cut(s)	148, 186, 374
BcnI	CCSGG	1 cut(s)	211
BfoI	RGCGCY	2 cut(s)	142, 174
BglI	GCCNNNNNGGC	1 cut(s)	80
BisI	GCNGC	6 cut(s)	6, 51, 62, 137, 142, 388
BlsI	GCNGC	6 cut(s)	7, 52, 63, 138, 143, 389
Bme1390I	CCNGG	4 cut(s)	148, 186, 211, 374
Bme18I	GGWCC	1 cut(s)	163
BmgT120I	GGNCC	3 cut(s)	163, 178, 370
BmiI	GGNNCC	2 cut(s)	190, 215
BmrFI	CCNGG	4 cut(s)	148, 186, 211, 374
BpiI	GAAGAC	1 cut(s)	439
BplI	GAGNNNNNCTC	2 cut(s)	191, 223
BpuMI	CCSGG	1 cut(s)	211
Bsa29I	ATCGAT	1 cut(s)	477
BsaHI	GRCGYC	1 cut(s)	359
BsaJI	CCNNGG	8 cut(s)	124, 146, 174, 198, 325, 372, 382, 435
BsaWI	WCCGGW	1 cut(s)	165
BsaXI	ACNNNNNCTCC	1 cut(s)	33
Bsc4I	CCNNNNNNNGG	3 cut(s)	199, 210, 355
Bse118I	RCCGGY	1 cut(s)	79
Bse3DI	GCAATG	1 cut(s)	69
BseBI	CCWGG	3 cut(s)	148, 186, 374
BseCI	ATCGAT	1 cut(s)	477
BseDI	CCNNGG	8 cut(s)	124, 146, 174, 198, 325, 372, 382, 435
BseGI	GGATG	2 cut(s)	292, 378
BseLI	CCNNNNNNNGG	3 cut(s)	199, 210, 355
BseMI	GCAATG	1 cut(s)	69
BseRI	GAGGAG	3 cut(s)	103, 275, 314
BseX3I	CGGCCG	2 cut(s)	42, 385
BseXI	GCAGC	2 cut(s)	73, 148
Bsh1236I	CGCG	6 cut(s)	90, 92, 103, 240, 332, 404
Bsh1285I	CGRYCG	3 cut(s)	45, 388, 481
BshFI	GGCC	7 cut(s)	5, 44, 83, 179, 203, 371, 387
BshVI	ATCGAT	1 cut(s)	477
BsiEI	CGRYCG	3 cut(s)	45, 388, 481
BsiHKAI	GWGCWC	1 cut(s)	159
BsiSI	CCGG	3 cut(s)	80, 166, 211
BslI	CCNNNNNNNGG	3 cut(s)	199, 210, 355
BsnI	GGCC	7 cut(s)	5, 44, 83, 179, 203, 371, 387
Bsp1286I	GDGCHC	1 cut(s)	159
Bsp143I	GATC	5 cut(s)	24, 213, 364, 474, 478
BspACI	CCGC	8 cut(s)	6, 51, 88, 121, 142, 217, 388, 404
BspANI	GGCC	7 cut(s)	5, 44, 83, 179, 203, 371, 387
BspDI	ATCGAT	1 cut(s)	477
BspFNI	CGCG	6 cut(s)	90, 92, 103, 240, 332, 404
BspLI	GGNNCC	2 cut(s)	190, 215
BspPI	GGATC	2 cut(s)	208, 221
BsrDI	GCAATG	1 cut(s)	69
BsrFI	RCCGGY	1 cut(s)	79
BssAI	RCCGGY	1 cut(s)	79
BssECI	CCNNGG	8 cut(s)	124, 146, 174, 198, 325, 372, 382, 435
BssMI	GATC	5 cut(s)	24, 213, 364, 474, 478
BssNI	GRCGYC	1 cut(s)	359
BssSI	CACGAG	1 cut(s)	158
BssT1I	CCWWGG	1 cut(s)	174
Bst2BI	CACGAG	1 cut(s)	158
Bst2UI	CCWGG	3 cut(s)	148, 186, 374
Bst4CI	ACNGT	1 cut(s)	436
BstACI	GRCGYC	1 cut(s)	359
BstC8I	GCNNGC	2 cut(s)	81, 467
BstDSI	CCRYGG	2 cut(s)	124, 435
BstENI	CCTNNNNNAGG	1 cut(s)	197
BstF5I	GGATG	2 cut(s)	292, 378
BstFNI	CGCG	6 cut(s)	90, 92, 103, 240, 332, 404
BstH2I	RGCGCY	2 cut(s)	142, 174
BstHHI	GCGC	5 cut(s)	92, 105, 141, 173, 332
BstKTI	GATC	5 cut(s)	27, 216, 367, 477, 481
BstMBI	GATC	5 cut(s)	24, 213, 364, 474, 478
BstMCI	CGRYCG	3 cut(s)	45, 388, 481
BstMWI	GCNNNNNNNGC	3 cut(s)	50, 80, 89
BstNI	CCWGG	3 cut(s)	148, 186, 374
BstSCI	CCNGG	4 cut(s)	146, 184, 209, 372
BstUI	CGCG	6 cut(s)	90, 92, 103, 240, 332, 404
BstV1I	GCAGC	2 cut(s)	73, 148
BstV2I	GAAGAC	1 cut(s)	439
BstX2I	RGATCY	1 cut(s)	213
BstYI	RGATCY	1 cut(s)	213
BstZI	CGGCCG	2 cut(s)	42, 385
Bsu15I	ATCGAT	1 cut(s)	477
BsuRI	GGCC	7 cut(s)	5, 44, 83, 179, 203, 371, 387
BsuTUI	ATCGAT	1 cut(s)	477
BtgI	CCRYGG	2 cut(s)	124, 435
BtsCI	GGATG	2 cut(s)	292, 378
Cac8I	GCNNGC	2 cut(s)	81, 467
CaiI	CAGNNNCTG	1 cut(s)	373
CfoI	GCGC	5 cut(s)	92, 105, 141, 173, 332
Cfr10I	RCCGGY	1 cut(s)	79
Cfr13I	GGNCC	3 cut(s)	163, 178, 370
ClaI	ATCGAT	1 cut(s)	477
CseI	GACGC	4 cut(s)	229, 348, 410, 448
Csp6I	GTAC	1 cut(s)	151
CviAII	CATG	1 cut(s)	451
CviQI	GTAC	1 cut(s)	151
DpnI	GATC	5 cut(s)	26, 215, 366, 476, 480
DpnII	GATC	5 cut(s)	24, 213, 364, 474, 478
EaeI	YGGCCR	3 cut(s)	3, 42, 385
EagI	CGGCCG	2 cut(s)	42, 385
EciI	GGCGGA	1 cut(s)	110
Ecl136II	GAGCTC	1 cut(s)	157
EclXI	CGGCCG	2 cut(s)	42, 385
Eco130I	CCWWGG	1 cut(s)	174
Eco147I	AGGCCT	1 cut(s)	203
Eco24I	GRGCYC	1 cut(s)	159
Eco47I	GGWCC	1 cut(s)	163
Eco52I	CGGCCG	2 cut(s)	42, 385
Eco53kI	GAGCTC	1 cut(s)	157
EcoICRI	GAGCTC	1 cut(s)	157
EcoNI	CCTNNNNNAGG	1 cut(s)	197
EcoO109I	RGGNCCY	1 cut(s)	370
EcoRII	CCWGG	3 cut(s)	146, 184, 372
EcoT14I	CCWWGG	1 cut(s)	174
EcoT38I	GRGCYC	1 cut(s)	159
ErhI	CCWWGG	1 cut(s)	174
FaeI	CATG	1 cut(s)	454
FaiI	YATR	1 cut(s)	452
FatI	CATG	1 cut(s)	450
Fnu4HI	GCNGC	6 cut(s)	6, 51, 62, 137, 142, 388
FokI	GGATG	2 cut(s)	279, 365
FriOI	GRGCYC	1 cut(s)	159
Fsp4HI	GCNGC	6 cut(s)	6, 51, 62, 137, 142, 388
GlaI	GCGC	5 cut(s)	91, 104, 140, 172, 331
GluI	GCNGC	6 cut(s)	6, 51, 62, 137, 142, 388
HaeII	RGCGCY	2 cut(s)	142, 174
HaeIII	GGCC	7 cut(s)	5, 44, 83, 179, 203, 371, 387
HapII	CCGG	3 cut(s)	80, 166, 211
HgaI	GACGC	4 cut(s)	229, 348, 410, 448
HhaI	GCGC	5 cut(s)	92, 105, 141, 173, 332
Hin1I	GRCGYC	1 cut(s)	359
Hin1II	CATG	1 cut(s)	454
Hin6I	GCGC	5 cut(s)	90, 103, 139, 171, 330
HinP1I	GCGC	5 cut(s)	90, 103, 139, 171, 330
HincII	GTYRAC	1 cut(s)	244
HindII	GTYRAC	1 cut(s)	244
HinfI	GANTC	1 cut(s)	420
HpaII	CCGG	3 cut(s)	80, 166, 211
HphI	GGTGA	4 cut(s)	187, 220, 253, 280
Hpy166II	GTNNAC	2 cut(s)	163, 244
Hpy188I	TCNGA	3 cut(s)	364, 400, 419
Hpy188III	TCNNGA	2 cut(s)	22, 472
Hpy8I	GTNNAC	2 cut(s)	163, 244
Hpy99I	CGWCG	5 cut(s)	50, 311, 404, 428, 464
HpyAV	CCTTC	1 cut(s)	94
HpyCH4III	ACNGT	1 cut(s)	436
HpyCH4IV	ACGT	1 cut(s)	249
HpyF10VI	GCNNNNNNNGC	3 cut(s)	50, 80, 89
HpySE526I	ACGT	1 cut(s)	249
Hsp92I	GRCGYC	1 cut(s)	359
Hsp92II	CATG	1 cut(s)	454
HspAI	GCGC	5 cut(s)	90, 103, 139, 171, 330
KroI	GCCGGC	1 cut(s)	79
KroNI	GCCGGC	1 cut(s)	81
Kzo9I	GATC	5 cut(s)	24, 213, 364, 474, 478
LmnI	GCTCC	3 cut(s)	168, 194, 474
Lsp1109I	GCAGC	2 cut(s)	73, 148
MaeII	ACGT	1 cut(s)	249
MalI	GATC	5 cut(s)	26, 215, 366, 476, 480
MboI	GATC	5 cut(s)	24, 213, 364, 474, 478
MboII	GAAGA	1 cut(s)	439
MflI	RGATCY	1 cut(s)	213
MhlI	GDGCHC	1 cut(s)	159
MluCI	AATT	1 cut(s)	223
MlyI	GAGTC	1 cut(s)	414
MmeI	TCCRAC	2 cut(s)	54, 423
MroNI	GCCGGC	1 cut(s)	79
MseI	TTAA	1 cut(s)	413
MspI	CCGG	3 cut(s)	80, 166, 211
MspR9I	CCNGG	4 cut(s)	148, 186, 211, 374
MvaI	CCWGG	3 cut(s)	148, 186, 374
MvnI	CGCG	6 cut(s)	90, 92, 103, 240, 332, 404
MwoI	GCNNNNNNNGC	3 cut(s)	50, 80, 89
NaeI	GCCGGC	1 cut(s)	81
NciI	CCSGG	1 cut(s)	211
NdeII	GATC	5 cut(s)	24, 213, 364, 474, 478
NgoMIV	GCCGGC	1 cut(s)	79
NlaIII	CATG	1 cut(s)	454
NlaIV	GGNNCC	2 cut(s)	190, 215
NmeAIII	GCCGAG	2 cut(s)	306, 363
PceI	AGGCCT	1 cut(s)	203
PcsI	WCGNNNNNNNCGW	2 cut(s)	423, 432
PdiI	GCCGGC	1 cut(s)	81
PfoI	TCCNGGA	1 cut(s)	209
PkrI	GCNGC	6 cut(s)	7, 52, 63, 138, 143, 389
Ple19I	CGATCG	1 cut(s)	481
PleI	GAGTC	1 cut(s)	414
PpsI	GAGTC	1 cut(s)	414
PshBI	ATTAAT	1 cut(s)	413
Psp124BI	GAGCTC	1 cut(s)	159
Psp6I	CCWGG	3 cut(s)	146, 184, 372
PspGI	CCWGG	3 cut(s)	146, 184, 372
PspN4I	GGNNCC	2 cut(s)	190, 215
PspPI	GGNCC	3 cut(s)	163, 178, 370
PstNI	CAGNNNCTG	1 cut(s)	373
PsuI	RGATCY	1 cut(s)	213
PvuI	CGATCG	1 cut(s)	481
RsaI	GTAC	1 cut(s)	152
RsaNI	GTAC	1 cut(s)	151
SacI	GAGCTC	1 cut(s)	159
SaqAI	TTAA	1 cut(s)	413
SatI	GCNGC	6 cut(s)	6, 51, 62, 137, 142, 388
Sau3AI	GATC	5 cut(s)	24, 213, 364, 474, 478
Sau96I	GGNCC	3 cut(s)	163, 178, 370
SchI	GAGTC	1 cut(s)	414
ScrFI	CCNGG	4 cut(s)	148, 186, 211, 374
SduI	GDGCHC	1 cut(s)	159
SetI	ASST	4 cut(s)	159, 233, 252, 351
SinI	GGWCC	1 cut(s)	163
Sse9I	AATT	1 cut(s)	223
SseBI	AGGCCT	1 cut(s)	203
SsiI	CCGC	8 cut(s)	6, 51, 88, 121, 142, 217, 388, 404
SstI	GAGCTC	1 cut(s)	159
StuI	AGGCCT	1 cut(s)	203
StyD4I	CCNGG	4 cut(s)	146, 184, 209, 372
StyI	CCWWGG	1 cut(s)	174
TaaI	ACNGT	1 cut(s)	436
TaiI	ACGT	1 cut(s)	252
TaqI	TCGA	1 cut(s)	477
TasI	AATT	1 cut(s)	223
TauI	GCSGC	4 cut(s)	8, 53, 144, 390
Tru1I	TTAA	1 cut(s)	413
Tru9I	TTAA	1 cut(s)	413
TseI	GCWGC	2 cut(s)	61, 136
TspDTI	ATGAA	2 cut(s)	85, 439
TspGWI	ACGGA	1 cut(s)	106
VpaK11BI	GGWCC	1 cut(s)	163
VspI	ATTAAT	1 cut(s)	413
XagI	CCTNNNNNAGG	1 cut(s)	197
XapI	RAATTY	1 cut(s)	223

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.