Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0012451

Physical Location & Seq

Genomic Coordinates Reverse (-)

20845674 .. 20848695

Gene Structure 3022 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G56190.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 870 bp

ATGGGGGATCATCTGGTGAGAGCTGAGGAATTCGAGAAGAAAGCTGAGAAAAAGCTCAATGGATGGGGAATATTCGGATCTAAGTACGAGGATGCTGCTGATCTGCTCGAAAAAGCAGCTAATTCCTATAAGCTCGCCAAATCATGGGATCAAGCTGGAAAAGCTTATCTAAAACTTGCCGACTGTCACTTAAAGTCAGATAGCAAACATGATGCTGCTAACGCCTATGCTGAGGCTGCTAAATGCTACAAGAAAGTTGACACTAATGAGGCTGCGTCTTGCCTAGAGCGAGCGGTGAATATATTTTGTGAGATAGGAAGGCTCAACATGGCTGCAAGATATTACAAGGAAATTGCTGAGTATTATGAATCTGATCAGAAGTTCGAGCAGGCTATTGCTTACTTTGAAAAGGCAGCTGAATTCTTTCAGAATGAAGAAGTGACCACTTCTGCAAACCAGTGCAATCTAAAGGTTGCGCAATATGCCGCCCAGCTGGAGCAGTATGAGAAGGCAATCAAGATTTATGAAGACATAGCACGCCATTCACTCAACAATAACTTGCTCAAGTATGGAGTTAAGGGCCATCTTCTCACTGCTGGCATGTGCCACTTATGCAAAGCCGATGTTGTTTCCATCACTAACGCTCTGGAGAAGTATCAGGATCTGGATCCAACTTTTACTGGAACACGGGAATGCAAGTTCTTAGCGGACCTTGCTTCTGCTATCGATGAAGAAGACATCGCAAAGTTCACAGATGTTGTCAAGGAGTTTGATAGCATGACTCCACTGGATTCATGGAAGACAACCATGTTGTTGAGGGTGAAGGAGAAGCTCAAGGCCAAGGAGCTAGAGGAGGATGACCTTACATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000149 GO:0003674 GO:0005483 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005886 GO:0005911 GO:0006810 GO:0006886 GO:0008104 GO:0008150 GO:0009506 GO:0009987 GO:0015031 GO:0015833 GO:0016020 GO:0016043 GO:0016192 GO:0019905 GO:0022411 GO:0030054 GO:0031090 GO:0031201 GO:0032984 GO:0032991 GO:0033036 GO:0034613 GO:0035494 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043624 GO:0043933 GO:0044422 GO:0044424 GO:0044425 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0045184 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0055044 GO:0061024 GO:0061025 GO:0070727 GO:0071702 GO:0071705 GO:0071840 GO:0071944 GO:0098588 GO:0098796 GO:0098805

KEGG Pathways

Metabolic & Signaling

ko04138 ko04721 map04138 map04721

Pfam Domains

Protein Families

SNAP

Protein Analysis

289

Amino Acids

32.75

Weight (kDa)

5.2

Isoelectric Point (pI)

23.01

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SNAP	PF14938	12 - 229	7.3e-90	Soluble NSF attachment protein, SNAP

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0012451)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G56190 AT3G56190
fragaria_vesca	FvH4_7g25480
malus_domestica	MD01G1161100.v1.1 MD07G1229100.v1.1
prunus_persica	Prupe.2G259200_v2.0.a1 Prupe.2G259200_v2.0.a1
pyrus_communis	pycom01g17690 pycom07g20730
rosa_chinensis	RchiOBHm_Chr1g0371441
rosa_laevigata	RLG00000026961
rosa_multiflora	Rmu_sc0000809.1_g000022
rosa_roxburghii	Rroxscaffold_4G00285680
rosa_rugosa	Rorug01G0364000
rosa_samantha	Rh1AG374200 Rh1BG337600 Rh1CG350900 Rh1DG368600
rosa_wichuraiana	Rw1G032910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	477
AccB7I	CCANNNNNTGG	1 cut(s)	144
AccBSI	CCGCTC	1 cut(s)	293
AciI	CCGC	3 cut(s)	293, 486, 707
AclWI	GGATC	6 cut(s)	15, 85, 156, 662, 669, 675
AcsI	RAATTY	2 cut(s)	29, 419
AfaI	GTAC	1 cut(s)	86
AfiI	CCNNNNNNNGG	1 cut(s)	144
AgsI	TTSAA	1 cut(s)	407
AloI	GAACNNNNNNTCC	2 cut(s)	683, 715
AlwI	GGATC	6 cut(s)	15, 85, 156, 662, 669, 675
AlwNI	CAGNNNCTG	1 cut(s)	664
AoxI	GGCC	2 cut(s)	580, 837
ApeKI	GCWGC	7 cut(s)	95, 116, 215, 236, 272, 332, 413
ApoI	RAATTY	2 cut(s)	29, 419
Asp700I	GAANNNNTTC	1 cut(s)	423
AspLEI	GCGC	1 cut(s)	478
AspS9I	GGNCC	2 cut(s)	580, 709
AsuHPI	GGTGA	3 cut(s)	28, 307, 832
AvaII	GGWCC	1 cut(s)	709
BamHI	GGATCC	1 cut(s)	667
BbsI	GAAGAC	3 cut(s)	534, 741, 806
BbvCI	CCTCAGC	2 cut(s)	24, 231
BbvI	GCAGC	7 cut(s)	82, 128, 202, 223, 259, 319, 425
BccI	CCATC	3 cut(s)	57, 591, 641
BcgI	CGANNNNNNTGC	2 cut(s)	77, 111
BclI	TGATCA	1 cut(s)	373
BfaI	CTAG	2 cut(s)	284, 848
BisI	GCNGC	8 cut(s)	96, 117, 216, 237, 273, 333, 414, 486
BlsI	GCNGC	8 cut(s)	97, 118, 217, 238, 274, 334, 415, 487
Bme18I	GGWCC	1 cut(s)	709
BmgT120I	GGNCC	2 cut(s)	580, 709
BmiI	GGNNCC	1 cut(s)	669
BmsI	GCATC	2 cut(s)	82, 202
BpiI	GAAGAC	3 cut(s)	534, 741, 806
BpmI	CTGGAG	2 cut(s)	515, 668
Bpu10I	CCTNAGC	2 cut(s)	24, 231
BpuEI	CTTGAG	2 cut(s)	548, 818
Bsa29I	ATCGAT	1 cut(s)	726
BsaBI	GATNNNNATC	1 cut(s)	666
BsaJI	CCNNGG	1 cut(s)	840
Bsc4I	CCNNNNNNNGG	1 cut(s)	144
Bse1I	ACTGG	3 cut(s)	457, 685, 792
Bse8I	GATNNNNATC	1 cut(s)	666
BseCI	ATCGAT	1 cut(s)	726
BseDI	CCNNGG	1 cut(s)	840
BseGI	GGATG	3 cut(s)	68, 97, 862
BseJI	GATNNNNATC	1 cut(s)	666
BseLI	CCNNNNNNNGG	1 cut(s)	144
BseMII	CTCAG	4 cut(s)	15, 36, 222, 348
BseNI	ACTGG	3 cut(s)	457, 685, 792
BseRI	GAGGAG	1 cut(s)	866
BseXI	GCAGC	7 cut(s)	82, 128, 202, 223, 259, 319, 425
BseYI	CCCAGC	1 cut(s)	489
BshFI	GGCC	2 cut(s)	582, 839
BshVI	ATCGAT	1 cut(s)	726
BslI	CCNNNNNNNGG	1 cut(s)	144
BsmI	GAATGC	1 cut(s)	698
BsnI	GGCC	2 cut(s)	582, 839
Bsp143I	GATC	7 cut(s)	7, 77, 100, 148, 373, 661, 667
BspACI	CCGC	3 cut(s)	293, 486, 707
BspANI	GGCC	2 cut(s)	582, 839
BspCNI	CTCAG	4 cut(s)	16, 37, 223, 349
BspDI	ATCGAT	1 cut(s)	726
BspLI	GGNNCC	1 cut(s)	669
BspPI	GGATC	6 cut(s)	15, 85, 156, 662, 669, 675
BsrBI	CCGCTC	1 cut(s)	293
BsrI	ACTGG	3 cut(s)	457, 685, 792
BssECI	CCNNGG	1 cut(s)	840
BssMI	GATC	7 cut(s)	7, 77, 100, 148, 373, 661, 667
BssT1I	CCWWGG	1 cut(s)	840
Bst4CI	ACNGT	1 cut(s)	185
BstC8I	GCNNGC	5 cut(s)	135, 291, 390, 538, 598
BstDEI	CTNAG	6 cut(s)	24, 45, 81, 231, 357, 703
BstF5I	GGATG	3 cut(s)	68, 97, 862
BstHHI	GCGC	1 cut(s)	478
BstKTI	GATC	7 cut(s)	10, 80, 103, 151, 376, 664, 670
BstMBI	GATC	7 cut(s)	7, 77, 100, 148, 373, 661, 667
BstMWI	GCNNNNNNNGC	6 cut(s)	161, 221, 236, 482, 612, 713
BstNSI	RCATGY	1 cut(s)	604
BstV1I	GCAGC	7 cut(s)	82, 128, 202, 223, 259, 319, 425
BstV2I	GAAGAC	3 cut(s)	534, 741, 806
BstX2I	RGATCY	3 cut(s)	77, 661, 667
BstYI	RGATCY	3 cut(s)	77, 661, 667
Bsu15I	ATCGAT	1 cut(s)	726
BsuRI	GGCC	2 cut(s)	582, 839
BsuTUI	ATCGAT	1 cut(s)	726
BtgZI	GCGATG	1 cut(s)	724
BtsCI	GGATG	3 cut(s)	68, 97, 862
BtsI	GCAGTG	1 cut(s)	591
BtsIMutI	CAGTG	3 cut(s)	464, 591, 785
Cac8I	GCNNGC	5 cut(s)	135, 291, 390, 538, 598
CaiI	CAGNNNCTG	1 cut(s)	664
CfoI	GCGC	1 cut(s)	478
Cfr13I	GGNCC	2 cut(s)	580, 709
ClaI	ATCGAT	1 cut(s)	726
CseI	GACGC	1 cut(s)	264
Csp6I	GTAC	1 cut(s)	85
CviAII	CATG	7 cut(s)	144, 209, 328, 601, 778, 795, 808
CviQI	GTAC	1 cut(s)	85
DdeI	CTNAG	6 cut(s)	24, 45, 81, 231, 357, 703
DpnI	GATC	7 cut(s)	9, 79, 102, 150, 375, 663, 669
DpnII	GATC	7 cut(s)	7, 77, 100, 148, 373, 661, 667
Eco130I	CCWWGG	1 cut(s)	840
Eco47I	GGWCC	1 cut(s)	709
EcoRI	GAATTC	2 cut(s)	29, 419
EcoT14I	CCWWGG	1 cut(s)	840
ErhI	CCWWGG	1 cut(s)	840
FaeI	CATG	7 cut(s)	147, 212, 331, 604, 781, 798, 811
FatI	CATG	7 cut(s)	143, 208, 327, 600, 777, 794, 807
FbaI	TGATCA	1 cut(s)	373
Fnu4HI	GCNGC	8 cut(s)	96, 117, 216, 237, 273, 333, 414, 486
FokI	GGATG	2 cut(s)	75, 104
Fsp4HI	GCNGC	8 cut(s)	96, 117, 216, 237, 273, 333, 414, 486
FspBI	CTAG	2 cut(s)	284, 848
FspI	TGCGCA	1 cut(s)	477
GlaI	GCGC	1 cut(s)	477
GluI	GCNGC	8 cut(s)	96, 117, 216, 237, 273, 333, 414, 486
GsaI	CCCAGC	1 cut(s)	493
GsuI	CTGGAG	2 cut(s)	515, 668
HaeIII	GGCC	2 cut(s)	582, 839
HgaI	GACGC	1 cut(s)	264
HhaI	GCGC	1 cut(s)	478
Hin1II	CATG	7 cut(s)	147, 212, 331, 604, 781, 798, 811
Hin6I	GCGC	1 cut(s)	476
HinP1I	GCGC	1 cut(s)	476
HincII	GTYRAC	1 cut(s)	259
HindII	GTYRAC	1 cut(s)	259
HindIII	AAGCTT	1 cut(s)	162
HinfI	GANTC	3 cut(s)	368, 781, 791
HphI	GGTGA	3 cut(s)	28, 307, 832
Hpy166II	GTNNAC	2 cut(s)	259, 750
Hpy188I	TCNGA	5 cut(s)	77, 199, 373, 378, 429
Hpy188III	TCNNGA	5 cut(s)	34, 517, 647, 659, 665
Hpy8I	GTNNAC	2 cut(s)	259, 750
HpyAV	CCTTC	3 cut(s)	312, 502, 817
HpyCH4III	ACNGT	1 cut(s)	185
HpyCH4V	TGCA	5 cut(s)	335, 452, 462, 615, 696
HpyF10VI	GCNNNNNNNGC	6 cut(s)	161, 221, 236, 482, 612, 713
HpyF3I	CTNAG	6 cut(s)	24, 45, 81, 231, 357, 703
Hsp92II	CATG	7 cut(s)	147, 212, 331, 604, 781, 798, 811
HspAI	GCGC	1 cut(s)	476
Ksp22I	TGATCA	1 cut(s)	373
Kzo9I	GATC	7 cut(s)	7, 77, 100, 148, 373, 661, 667
LmnI	GCTCC	2 cut(s)	496, 844
Lsp1109I	GCAGC	7 cut(s)	82, 128, 202, 223, 259, 319, 425
LweI	GCATC	2 cut(s)	82, 202
MaeI	CTAG	2 cut(s)	284, 848
MaeIII	GTNAC	2 cut(s)	185, 439
MalI	GATC	7 cut(s)	9, 79, 102, 150, 375, 663, 669
MbiI	CCGCTC	1 cut(s)	293
MboI	GATC	7 cut(s)	7, 77, 100, 148, 373, 661, 667
MboII	GAAGA	7 cut(s)	49, 446, 539, 578, 743, 746, 811
MflI	RGATCY	3 cut(s)	77, 661, 667
MluCI	AATT	4 cut(s)	29, 121, 351, 419
MlyI	GAGTC	1 cut(s)	775
MmeI	TCCRAC	1 cut(s)	695
MnlI	CCTC	7 cut(s)	19, 82, 226, 262, 810, 844, 847
MroXI	GAANNNNTTC	1 cut(s)	423
MseI	TTAA	2 cut(s)	191, 576
MslI	CAYNNNNRTG	1 cut(s)	691
MspA1I	CMGCKG	2 cut(s)	416, 493
Mva1269I	GAATGC	1 cut(s)	698
MwoI	GCNNNNNNNGC	6 cut(s)	161, 221, 236, 482, 612, 713
NdeII	GATC	7 cut(s)	7, 77, 100, 148, 373, 661, 667
NlaIII	CATG	7 cut(s)	147, 212, 331, 604, 781, 798, 811
NlaIV	GGNNCC	1 cut(s)	669
NmuCI	GTSAC	2 cut(s)	185, 439
NsbI	TGCGCA	1 cut(s)	477
NspI	RCATGY	1 cut(s)	604
PctI	GAATGC	1 cut(s)	698
PdmI	GAANNNNTTC	1 cut(s)	423
PfeI	GAWTC	2 cut(s)	368, 791
PflMI	CCANNNNNTGG	1 cut(s)	144
PkrI	GCNGC	8 cut(s)	97, 118, 217, 238, 274, 334, 415, 487
PleI	GAGTC	1 cut(s)	775
PpsI	GAGTC	1 cut(s)	775
PspFI	CCCAGC	1 cut(s)	489
PspN4I	GGNNCC	1 cut(s)	669
PspPI	GGNCC	2 cut(s)	580, 709
PstNI	CAGNNNCTG	1 cut(s)	664
PsuI	RGATCY	3 cut(s)	77, 661, 667
PvuII	CAGCTG	2 cut(s)	416, 493
RsaI	GTAC	1 cut(s)	86
RsaNI	GTAC	1 cut(s)	85
RseI	CAYNNNNRTG	1 cut(s)	691
SaqAI	TTAA	2 cut(s)	191, 576
SatI	GCNGC	8 cut(s)	96, 117, 216, 237, 273, 333, 414, 486
Sau3AI	GATC	7 cut(s)	7, 77, 100, 148, 373, 661, 667
Sau96I	GGNCC	2 cut(s)	580, 709
SchI	GAGTC	1 cut(s)	775
SfaNI	GCATC	2 cut(s)	82, 202
SinI	GGWCC	1 cut(s)	709
SmiMI	CAYNNNNRTG	1 cut(s)	691
SmlI	CTYRAG	2 cut(s)	563, 833
SmoI	CTYRAG	2 cut(s)	563, 833
Sse9I	AATT	4 cut(s)	29, 121, 351, 419
SsiI	CCGC	3 cut(s)	293, 486, 707
SspI	AATATT	1 cut(s)	72
SspMI	CTAG	2 cut(s)	284, 848
StyI	CCWWGG	1 cut(s)	840
TaaI	ACNGT	1 cut(s)	185
TaqI	TCGA	4 cut(s)	33, 108, 384, 726
TasI	AATT	4 cut(s)	29, 121, 351, 419
TauI	GCSGC	1 cut(s)	488
TfiI	GAWTC	2 cut(s)	368, 791
Tru1I	TTAA	2 cut(s)	191, 576
Tru9I	TTAA	2 cut(s)	191, 576
TscAI	CASTG	3 cut(s)	464, 598, 792
TseFI	GTSAC	2 cut(s)	185, 439
TseI	GCWGC	7 cut(s)	95, 116, 215, 236, 272, 332, 413
Tsp45I	GTSAC	2 cut(s)	185, 439
TspDTI	ATGAA	5 cut(s)	381, 447, 540, 744, 783
TspRI	CASTG	3 cut(s)	464, 598, 792
Van91I	CCANNNNNTGG	1 cut(s)	144
VpaK11BI	GGWCC	1 cut(s)	709
XapI	RAATTY	2 cut(s)	29, 419
XceI	RCATGY	1 cut(s)	604
XcmI	CCANNNNNNNNNTGG	1 cut(s)	792
XmnI	GAANNNNTTC	1 cut(s)	423
XspI	CTAG	2 cut(s)	284, 848

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.