Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp02

Orthogroup ID

OG0012451

Physical Location & Seq

Genomic Coordinates Reverse (-)

26961267 .. 26965087

Gene Structure 3821 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.2G259200.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 870 bp

ATGGGTGATCATATTGCTAGGGCGGAGGAATTCGAAAAGAAAGCAGAGAAGAAACTGAGTAGCTGGGGATTTTTCGGTTCCAAACATGAAGACGCCGCAGAACTCTTCGATAAATCTGCCAATTCTTACAAGCTCGGCAAATCCTGGGACAAAGCTGGAGCAACATATGTCAAGTTGGCAAACTGTCATTTGAAGTCTGACAGCAAACATGAAGCAGCCACAGCTTATGTTGATGCTGCACATTGCTACAAGAAATCATCTGTAAATGAGGCCATTTCTTGCTTAGAGCAGGCTGTAAATTTACTGTGTGATATTGGAAGGCTTAATATGGCTGCAAGATATTATAAGGAAATTGCCGAACTATATGAATCTGAACAAAACATTGAGAAGGCTATTGAGTTCTTTGAAAGGGCAGCTGATTTCTTCCAAAATGAAGAAGTAACAACTTCGGCCAATCAGTGCAAGCAGAAAGTTGCTCAATTTGCTGCTCAGATTGAACAGTATCCAAAGTCAATTGAAATCTATGAAGAAATTGCTCGGCACTCACTCAACAATAACTTGCTCAAGTATGGAGTTAAAGGGCATCTTCTCAATGCTGGAATATGCCAACTTTGTAAAGGAGATTCTGTTGCAATCACCAATGCATTAGAGCGATATCAGGAATTAGATCCTACTTTTTCAGGAACAAGGGAATACAGGTTCTTAGCGGATATTGCAGCATCGGTTGATGAGGAAGACGTTGCCAAGTTCACTGATGTGGTTAAGGAATTTGATAGTATGACCCCACTGGATTCATGGAAGACAACCTTACTGCTGAGAGTGAAGGAAAAGCTGAAATCCAAGGAACTGGAGGAGGATGATCTTACCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000149 GO:0003674 GO:0005483 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005886 GO:0005911 GO:0006810 GO:0006886 GO:0008104 GO:0008150 GO:0009506 GO:0009987 GO:0015031 GO:0015833 GO:0016020 GO:0016043 GO:0016192 GO:0019905 GO:0022411 GO:0030054 GO:0031090 GO:0031201 GO:0032984 GO:0032991 GO:0033036 GO:0034613 GO:0035494 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043624 GO:0043933 GO:0044422 GO:0044424 GO:0044425 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0045184 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0055044 GO:0061024 GO:0061025 GO:0070727 GO:0071702 GO:0071705 GO:0071840 GO:0071944 GO:0098588 GO:0098796 GO:0098805

KEGG Pathways

Metabolic & Signaling

ko04138 ko04721 map04138 map04721

Pfam Domains

Protein Families

SNAP

Protein Analysis

290

Amino Acids

32.69

Weight (kDa)

5.2

Isoelectric Point (pI)

33.15

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012451)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G56190 AT3G56190
fragaria_vesca	FvH4_7g25480
malus_domestica	MD01G1161100.v1.1 MD07G1229100.v1.1
prunus_persica	Prupe.2G259200_v2.0.a1 Prupe.2G259200_v2.0.a1
pyrus_communis	pycom01g17690 pycom07g20730
rosa_chinensis	RchiOBHm_Chr1g0371441
rosa_laevigata	RLG00000026961
rosa_multiflora	Rmu_sc0000809.1_g000022
rosa_roxburghii	Rroxscaffold_4G00285680
rosa_rugosa	Rorug01G0364000
rosa_samantha	Rh1AG374200 Rh1BG337600 Rh1CG350900 Rh1DG368600
rosa_wichuraiana	Rw1G032910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	345
AciI	CCGC	3 cut(s)	23, 96, 707
AclWI	GGATC	1 cut(s)	662
AcoI	YGGCCR	1 cut(s)	450
AcsI	RAATTY	3 cut(s)	29, 298, 767
AcyI	GRCGYC	1 cut(s)	93
AgsI	TTSAA	4 cut(s)	193, 407, 497, 518
AjnI	CCWGG	1 cut(s)	143
AleI	CACNNNNGTG	1 cut(s)	755
AloI	GAACNNNNNNTCC	2 cut(s)	683, 715
AluBI	AGCT	6 cut(s)	63, 133, 155, 224, 416, 832
AluI	AGCT	6 cut(s)	63, 133, 155, 224, 416, 832
AlwI	GGATC	1 cut(s)	662
AoxI	GGCC	2 cut(s)	270, 450
ApeKI	GCWGC	6 cut(s)	215, 236, 332, 413, 485, 716
ApoI	RAATTY	3 cut(s)	29, 298, 767
AsuHPI	GGTGA	2 cut(s)	17, 628
AsuII	TTCGAA	1 cut(s)	33
BbsI	GAAGAC	3 cut(s)	96, 741, 806
BbvI	GCAGC	6 cut(s)	223, 227, 319, 425, 472, 728
BcgI	CGANNNNNNTGC	2 cut(s)	98, 132
BciT130I	CCWGG	1 cut(s)	145
BciVI	GTATCC	1 cut(s)	513
BclI	TGATCA	1 cut(s)	7
BfaI	CTAG	1 cut(s)	18
BfuI	GTATCC	1 cut(s)	513
BisI	GCNGC	7 cut(s)	96, 216, 237, 333, 414, 486, 717
BlsI	GCNGC	7 cut(s)	97, 217, 238, 334, 415, 487, 718
Bme1390I	CCNGG	1 cut(s)	145
BmiI	GGNNCC	1 cut(s)	79
BmrFI	CCNGG	1 cut(s)	145
BmsI	GCATC	3 cut(s)	223, 592, 728
BpiI	GAAGAC	3 cut(s)	96, 741, 806
BpmI	CTGGAG	2 cut(s)	177, 869
Bpu14I	TTCGAA	1 cut(s)	33
BpuEI	CTTGAG	1 cut(s)	548
BsaHI	GRCGYC	1 cut(s)	93
BsaJI	CCNNGG	2 cut(s)	144, 840
BsaXI	ACNNNNNCTCC	2 cut(s)	612, 642
Bse1I	ACTGG	2 cut(s)	792, 852
Bse3DI	GCAATG	1 cut(s)	241
BseBI	CCWGG	1 cut(s)	145
BseDI	CCNNGG	2 cut(s)	144, 840
BseGI	GGATG	1 cut(s)	862
BseMI	GCAATG	1 cut(s)	241
BseMII	CTCAG	3 cut(s)	47, 503, 806
BseNI	ACTGG	2 cut(s)	792, 852
BseRI	GAGGAG	1 cut(s)	866
BseXI	GCAGC	6 cut(s)	223, 227, 319, 425, 472, 728
BseYI	CCCAGC	1 cut(s)	63
BsgI	GTGCAG	1 cut(s)	222
BshFI	GGCC	2 cut(s)	272, 452
BslFI	GGGAC	1 cut(s)	161
BsmFI	GGGAC	1 cut(s)	161
BsnI	GGCC	2 cut(s)	272, 452
Bsp119I	TTCGAA	1 cut(s)	33
Bsp143I	GATC	3 cut(s)	7, 667, 859
BspACI	CCGC	3 cut(s)	23, 96, 707
BspANI	GGCC	2 cut(s)	272, 452
BspCNI	CTCAG	3 cut(s)	48, 502, 807
BspLI	GGNNCC	1 cut(s)	79
BspPI	GGATC	1 cut(s)	662
BspT104I	TTCGAA	1 cut(s)	33
BsrDI	GCAATG	1 cut(s)	241
BsrI	ACTGG	2 cut(s)	792, 852
BssECI	CCNNGG	2 cut(s)	144, 840
BssMI	GATC	3 cut(s)	7, 667, 859
BssNI	GRCGYC	1 cut(s)	93
BssT1I	CCWWGG	1 cut(s)	840
Bst2UI	CCWGG	1 cut(s)	145
Bst4CI	ACNGT	3 cut(s)	185, 306, 501
Bst6I	CTCTTC	1 cut(s)	110
BstACI	GRCGYC	1 cut(s)	93
BstBI	TTCGAA	1 cut(s)	33
BstC8I	GCNNGC	2 cut(s)	291, 464
BstDEI	CTNAG	5 cut(s)	56, 283, 489, 703, 815
BstF5I	GGATG	1 cut(s)	862
BstKTI	GATC	3 cut(s)	10, 670, 862
BstMBI	GATC	3 cut(s)	7, 667, 859
BstMWI	GCNNNNNNNGC	3 cut(s)	221, 482, 713
BstNI	CCWGG	1 cut(s)	145
BstSCI	CCNGG	1 cut(s)	143
BstV1I	GCAGC	6 cut(s)	223, 227, 319, 425, 472, 728
BstV2I	GAAGAC	3 cut(s)	96, 741, 806
BstX2I	RGATCY	1 cut(s)	667
BstXI	CCANNNNNNTGG	1 cut(s)	847
BstYI	RGATCY	1 cut(s)	667
BsuI	GTATCC	1 cut(s)	513
BsuRI	GGCC	2 cut(s)	272, 452
BtsCI	GGATG	1 cut(s)	862
BtsIMutI	CAGTG	3 cut(s)	464, 750, 785
Cac8I	GCNNGC	2 cut(s)	291, 464
CseI	GACGC	1 cut(s)	101
CviAII	CATG	3 cut(s)	86, 209, 795
DdeI	CTNAG	5 cut(s)	56, 283, 489, 703, 815
DpnI	GATC	3 cut(s)	9, 669, 861
DpnII	GATC	3 cut(s)	7, 667, 859
EaeI	YGGCCR	1 cut(s)	450
Eam1104I	CTCTTC	1 cut(s)	110
EarI	CTCTTC	1 cut(s)	110
EciI	GGCGGA	1 cut(s)	38
Eco130I	CCWWGG	1 cut(s)	840
Eco32I	GATATC	1 cut(s)	656
EcoRI	GAATTC	1 cut(s)	29
EcoRII	CCWGG	1 cut(s)	143
EcoRV	GATATC	1 cut(s)	656
EcoT14I	CCWWGG	1 cut(s)	840
EcoT22I	ATGCAT	1 cut(s)	646
ErhI	CCWWGG	1 cut(s)	840
FaeI	CATG	3 cut(s)	89, 212, 798
FalI	AAGNNNNNCTT	4 cut(s)	570, 602, 791, 823
FaqI	GGGAC	1 cut(s)	161
FatI	CATG	3 cut(s)	85, 208, 794
FauNDI	CATATG	1 cut(s)	166
FbaI	TGATCA	1 cut(s)	7
Fnu4HI	GCNGC	7 cut(s)	96, 216, 237, 333, 414, 486, 717
Fsp4HI	GCNGC	7 cut(s)	96, 216, 237, 333, 414, 486, 717
FspBI	CTAG	1 cut(s)	18
GluI	GCNGC	7 cut(s)	96, 216, 237, 333, 414, 486, 717
GsaI	CCCAGC	1 cut(s)	67
GsuI	CTGGAG	2 cut(s)	177, 869
HaeIII	GGCC	2 cut(s)	272, 452
HgaI	GACGC	1 cut(s)	101
Hin1I	GRCGYC	1 cut(s)	93
Hin1II	CATG	3 cut(s)	89, 212, 798
HinfI	GANTC	3 cut(s)	368, 623, 791
HphI	GGTGA	2 cut(s)	17, 628
Hpy166II	GTNNAC	1 cut(s)	750
Hpy188I	TCNGA	3 cut(s)	199, 373, 492
Hpy188III	TCNNGA	2 cut(s)	659, 681
Hpy8I	GTNNAC	1 cut(s)	750
HpyAV	CCTTC	3 cut(s)	312, 382, 817
HpyCH4III	ACNGT	3 cut(s)	185, 306, 501
HpyCH4IV	ACGT	1 cut(s)	738
HpyCH4V	TGCA	6 cut(s)	239, 335, 462, 632, 644, 716
HpyF10VI	GCNNNNNNNGC	3 cut(s)	221, 482, 713
HpyF3I	CTNAG	5 cut(s)	56, 283, 489, 703, 815
HpySE526I	ACGT	1 cut(s)	738
Hsp92I	GRCGYC	1 cut(s)	93
Hsp92II	CATG	3 cut(s)	89, 212, 798
Ksp22I	TGATCA	1 cut(s)	7
Kzo9I	GATC	3 cut(s)	7, 667, 859
LmnI	GCTCC	1 cut(s)	158
Lsp1109I	GCAGC	6 cut(s)	223, 227, 319, 425, 472, 728
LweI	GCATC	3 cut(s)	223, 592, 728
MaeI	CTAG	1 cut(s)	18
MaeII	ACGT	1 cut(s)	738
MaeIII	GTNAC	1 cut(s)	439
MalI	GATC	3 cut(s)	9, 669, 861
MboI	GATC	3 cut(s)	7, 667, 859
MboII	GAAGA	9 cut(s)	61, 97, 101, 415, 446, 539, 578, 746, 811
MfeI	CAATTG	1 cut(s)	513
MflI	RGATCY	1 cut(s)	667
MluCI	AATT	9 cut(s)	29, 121, 298, 351, 479, 513, 531, 662, 767
MnlI	CCTC	5 cut(s)	19, 262, 724, 844, 847
Mph1103I	ATGCAT	1 cut(s)	646
MseI	TTAA	3 cut(s)	324, 576, 762
MslI	CAYNNNNRTG	1 cut(s)	755
MspA1I	CMGCKG	1 cut(s)	416
MspR9I	CCNGG	1 cut(s)	145
MunI	CAATTG	1 cut(s)	513
MvaI	CCWGG	1 cut(s)	145
MwoI	GCNNNNNNNGC	3 cut(s)	221, 482, 713
NdeI	CATATG	1 cut(s)	166
NdeII	GATC	3 cut(s)	7, 667, 859
NlaIII	CATG	3 cut(s)	89, 212, 798
NlaIV	GGNNCC	1 cut(s)	79
NmeAIII	GCCGAG	2 cut(s)	114, 517
NsiI	ATGCAT	1 cut(s)	646
NspV	TTCGAA	1 cut(s)	33
OliI	CACNNNNGTG	1 cut(s)	755
PfeI	GAWTC	3 cut(s)	368, 623, 791
PkrI	GCNGC	7 cut(s)	97, 217, 238, 334, 415, 487, 718
PsiI	TTATAA	1 cut(s)	345
Psp6I	CCWGG	1 cut(s)	143
PspFI	CCCAGC	1 cut(s)	63
PspGI	CCWGG	1 cut(s)	143
PspN4I	GGNNCC	1 cut(s)	79
PsuI	RGATCY	1 cut(s)	667
PvuII	CAGCTG	1 cut(s)	416
RseI	CAYNNNNRTG	1 cut(s)	755
SaqAI	TTAA	3 cut(s)	324, 576, 762
SatI	GCNGC	7 cut(s)	96, 216, 237, 333, 414, 486, 717
Sau3AI	GATC	3 cut(s)	7, 667, 859
ScrFI	CCNGG	1 cut(s)	145
SfaNI	GCATC	3 cut(s)	223, 592, 728
SfuI	TTCGAA	1 cut(s)	33
SmiMI	CAYNNNNRTG	1 cut(s)	755
SmlI	CTYRAG	1 cut(s)	563
SmoI	CTYRAG	1 cut(s)	563
Sse9I	AATT	9 cut(s)	29, 121, 298, 351, 479, 513, 531, 662, 767
SsiI	CCGC	3 cut(s)	23, 96, 707
SspMI	CTAG	1 cut(s)	18
StyD4I	CCNGG	1 cut(s)	143
StyI	CCWWGG	1 cut(s)	840
TaaI	ACNGT	3 cut(s)	185, 306, 501
TaiI	ACGT	1 cut(s)	741
TaqI	TCGA	2 cut(s)	33, 108
TasI	AATT	9 cut(s)	29, 121, 298, 351, 479, 513, 531, 662, 767
TauI	GCSGC	1 cut(s)	98
TfiI	GAWTC	3 cut(s)	368, 623, 791
Tru1I	TTAA	3 cut(s)	324, 576, 762
Tru9I	TTAA	3 cut(s)	324, 576, 762
TscAI	CASTG	3 cut(s)	464, 757, 792
TseI	GCWGC	6 cut(s)	215, 236, 332, 413, 485, 716
TspDTI	ATGAA	6 cut(s)	102, 225, 381, 447, 540, 783
TspRI	CASTG	3 cut(s)	464, 757, 792
XapI	RAATTY	3 cut(s)	29, 298, 767
XcmI	CCANNNNNNNNNTGG	1 cut(s)	792
XspI	CTAG	1 cut(s)	18
Zsp2I	ATGCAT	1 cut(s)	646

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.