Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0012451

Physical Location & Seq

Genomic Coordinates Forward (+)

6919451 .. 6923656

Gene Structure 4206 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00285680.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 900 bp

ATGGGAGATCAGATAGCTAGGGCTGAAGATTTCGAACGCAAAGCGGAGAAGAAGCTCGGCGGCTGGGGCCTCTTCGGCTCCAAATACGAAGACGCCGCTGAACTCTTCGATAAAGCTGCCAATTCCTACAAGCTCGCCAAATCCTGGATGGCAAAAGGACGTGGTGTTTCAGGGGATAAAGCTGGAGCAACATATGTCAAGTTGGCAAACTGTCATTTAAAGACTGAGAGCAAACATGAAGCCGCCACAGCTTATGTTGATGCTGCACATTGCTACAAGAAAACATCTGTAAATGAGTCCATTTCTTGCTTAGAGCAGGGTGTAAATTTGCTTTGTGATATTGGAAGGCTTAATATGGCTGCAAGATACTATAAGGAAATTGCCGAGTTATATGAATCTGAACAAAACATTGAGAAGGCTATTGACTTCTATGAAAGAGCTGCTGATTTTTTCCAAAATGAAGAAGTAACGACTTCTGCCAACCAGTGCAAGCAGAAAGTTGCTCAATTTGCTGCTCAGATTGAACAATATCCCAAGTCTATTCAAATTTATGAGGAAATTGCACGGCGGCACTCACTCAACAACAACTTGCTGAAGTATGGGGTCAAAGGACATCTTCTTAATGCTGGGATATGCCAACTCTGCAAAGGAGATCCTGTTGCAATCAGCAATGCATTAGAGAAATACGAGGATTTGGATCCAACTTTCTCAGGAACAAGGGAGTACAGATTCTTAAAGGATATTGCTGCTTCGCTTGATGAAGAAGATGTTGCTAAGTTCACTGATGTGGTGAAGGAATTTGATAGCATGACCCCACTGGATTCTTGGAAGACCACCTTACTGTTGAGAGTGAAGGAAAAGCTGAAAGCCAAGGAGTTGGAGGAAGATGATCTGACCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000149 GO:0003674 GO:0005483 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005886 GO:0005911 GO:0006810 GO:0006886 GO:0008104 GO:0008150 GO:0009506 GO:0009987 GO:0015031 GO:0015833 GO:0016020 GO:0016043 GO:0016192 GO:0019905 GO:0022411 GO:0030054 GO:0031090 GO:0031201 GO:0032984 GO:0032991 GO:0033036 GO:0034613 GO:0035494 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043624 GO:0043933 GO:0044422 GO:0044424 GO:0044425 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0045184 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0055044 GO:0061024 GO:0061025 GO:0070727 GO:0071702 GO:0071705 GO:0071840 GO:0071944 GO:0098588 GO:0098796 GO:0098805

KEGG Pathways

Metabolic & Signaling

ko04138 ko04721 map04138 map04721

Pfam Domains

Protein Families

SNAP

Protein Analysis

299

Amino Acids

33.68

Weight (kDa)

5.38

Isoelectric Point (pI)

31.62

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SNAP	PF14938	7 - 288	1.5e-105	Soluble NSF attachment protein, SNAP
HEAT_Nup120	PF23300	60 - 179	6.8e-07	Nucleoporin Nup120, HEAT repeats

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012451)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G56190 AT3G56190
fragaria_vesca	FvH4_7g25480
malus_domestica	MD01G1161100.v1.1 MD07G1229100.v1.1
prunus_persica	Prupe.2G259200_v2.0.a1 Prupe.2G259200_v2.0.a1
pyrus_communis	pycom01g17690 pycom07g20730
rosa_chinensis	RchiOBHm_Chr1g0371441
rosa_laevigata	RLG00000026961
rosa_multiflora	Rmu_sc0000809.1_g000022
rosa_roxburghii	Rroxscaffold_4G00285680
rosa_rugosa	Rorug01G0364000
rosa_samantha	Rh1AG374200 Rh1BG337600 Rh1CG350900 Rh1DG368600
rosa_wichuraiana	Rw1G032910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	144
AciI	CCGC	5 cut(s)	44, 60, 96, 243, 568
AclWI	GGATC	3 cut(s)	647, 692, 705
AcsI	RAATTY	3 cut(s)	325, 546, 797
AcuI	CTGAAG	2 cut(s)	45, 614
AcyI	GRCGYC	1 cut(s)	93
AfaI	GTAC	1 cut(s)	725
AfiI	CCNNNNNNNGG	1 cut(s)	144
AgsI	TTSAA	2 cut(s)	524, 545
AjiI	CACGTC	1 cut(s)	161
AjnI	CCWGG	1 cut(s)	143
AleI	CACNNNNGTG	1 cut(s)	785
AluBI	AGCT	8 cut(s)	17, 55, 116, 133, 182, 251, 440, 862
AluI	AGCT	8 cut(s)	17, 55, 116, 133, 182, 251, 440, 862
AlwI	GGATC	3 cut(s)	647, 692, 705
AoxI	GGCC	1 cut(s)	67
ApeKI	GCWGC	6 cut(s)	116, 263, 359, 440, 512, 746
ApoI	RAATTY	3 cut(s)	325, 546, 797
AspS9I	GGNCC	1 cut(s)	67
AsuHPI	GGTGA	1 cut(s)	802
AsuII	TTCGAA	1 cut(s)	33
BamHI	GGATCC	1 cut(s)	697
BbsI	GAAGAC	2 cut(s)	96, 836
BbvI	GCAGC	6 cut(s)	103, 250, 346, 427, 499, 733
BccI	CCATC	1 cut(s)	142
BceAI	ACGGC	1 cut(s)	581
BcgI	CGANNNNNNTGC	2 cut(s)	98, 132
BciT130I	CCWGG	1 cut(s)	145
BfaI	CTAG	1 cut(s)	18
BglI	GCCNNNNNGGC	1 cut(s)	75
Bme1390I	CCNGG	1 cut(s)	145
BmgBI	CACGTC	1 cut(s)	161
BmgT120I	GGNCC	1 cut(s)	67
BmiI	GGNNCC	3 cut(s)	68, 79, 699
BmrFI	CCNGG	1 cut(s)	145
BmsI	GCATC	1 cut(s)	250
BpiI	GAAGAC	2 cut(s)	96, 836
BpmI	CTGGAG	1 cut(s)	204
Bpu14I	TTCGAA	1 cut(s)	33
BsaBI	GATNNNNATC	1 cut(s)	696
BsaHI	GRCGYC	1 cut(s)	93
BsaJI	CCNNGG	1 cut(s)	870
BsaXI	ACNNNNNCTCC	2 cut(s)	642, 672
Bsc4I	CCNNNNNNNGG	1 cut(s)	144
Bse1I	ACTGG	2 cut(s)	484, 822
Bse3DI	GCAATG	2 cut(s)	268, 676
Bse8I	GATNNNNATC	1 cut(s)	696
BseBI	CCWGG	1 cut(s)	145
BseDI	CCNNGG	1 cut(s)	870
BseGI	GGATG	1 cut(s)	153
BseJI	GATNNNNATC	1 cut(s)	696
BseLI	CCNNNNNNNGG	1 cut(s)	144
BseMI	GCAATG	2 cut(s)	268, 676
BseMII	CTCAG	3 cut(s)	216, 530, 723
BseNI	ACTGG	2 cut(s)	484, 822
BseXI	GCAGC	6 cut(s)	103, 250, 346, 427, 499, 733
BseYI	CCCAGC	2 cut(s)	63, 626
BsgI	GTGCAG	1 cut(s)	249
BshFI	GGCC	1 cut(s)	69
BslI	CCNNNNNNNGG	1 cut(s)	144
BsnI	GGCC	1 cut(s)	69
Bsp119I	TTCGAA	1 cut(s)	33
Bsp143I	GATC	4 cut(s)	7, 652, 697, 889
BspACI	CCGC	5 cut(s)	44, 60, 96, 243, 568
BspANI	GGCC	1 cut(s)	69
BspCNI	CTCAG	3 cut(s)	217, 529, 722
BspLI	GGNNCC	3 cut(s)	68, 79, 699
BspPI	GGATC	3 cut(s)	647, 692, 705
BspT104I	TTCGAA	1 cut(s)	33
BsrDI	GCAATG	2 cut(s)	268, 676
BsrI	ACTGG	2 cut(s)	484, 822
BssECI	CCNNGG	1 cut(s)	870
BssMI	GATC	4 cut(s)	7, 652, 697, 889
BssNI	GRCGYC	1 cut(s)	93
BssT1I	CCWWGG	1 cut(s)	870
Bst2UI	CCWGG	1 cut(s)	145
Bst4CI	ACNGT	2 cut(s)	212, 843
Bst6I	CTCTTC	2 cut(s)	77, 110
BstACI	GRCGYC	1 cut(s)	93
BstBI	TTCGAA	1 cut(s)	33
BstC8I	GCNNGC	2 cut(s)	135, 491
BstDEI	CTNAG	5 cut(s)	225, 310, 516, 709, 774
BstF5I	GGATG	1 cut(s)	153
BstKTI	GATC	4 cut(s)	10, 655, 700, 892
BstMBI	GATC	4 cut(s)	7, 652, 697, 889
BstMWI	GCNNNNNNNGC	5 cut(s)	66, 75, 248, 509, 642
BstNI	CCWGG	1 cut(s)	145
BstSCI	CCNGG	1 cut(s)	143
BstV1I	GCAGC	6 cut(s)	103, 250, 346, 427, 499, 733
BstV2I	GAAGAC	2 cut(s)	96, 836
BstX2I	RGATCY	2 cut(s)	652, 697
BstXI	CCANNNNNNTGG	1 cut(s)	877
BstYI	RGATCY	2 cut(s)	652, 697
BsuRI	GGCC	1 cut(s)	69
BtrI	CACGTC	1 cut(s)	161
BtsCI	GGATG	1 cut(s)	153
BtsIMutI	CAGTG	3 cut(s)	491, 780, 815
Cac8I	GCNNGC	2 cut(s)	135, 491
Cfr13I	GGNCC	1 cut(s)	67
CseI	GACGC	1 cut(s)	101
Csp6I	GTAC	1 cut(s)	724
CviAII	CATG	2 cut(s)	236, 808
CviQI	GTAC	1 cut(s)	724
DdeI	CTNAG	5 cut(s)	225, 310, 516, 709, 774
DpnI	GATC	4 cut(s)	9, 654, 699, 891
DpnII	GATC	4 cut(s)	7, 652, 697, 889
DraI	TTTAAA	1 cut(s)	219
Eam1104I	CTCTTC	2 cut(s)	77, 110
EarI	CTCTTC	2 cut(s)	77, 110
Eco130I	CCWWGG	1 cut(s)	870
Eco57I	CTGAAG	2 cut(s)	45, 614
EcoO109I	RGGNCCY	1 cut(s)	67
EcoRII	CCWGG	1 cut(s)	143
EcoT14I	CCWWGG	1 cut(s)	870
EcoT22I	ATGCAT	1 cut(s)	676
ErhI	CCWWGG	1 cut(s)	870
FaeI	CATG	2 cut(s)	239, 811
FalI	AAGNNNNNCTT	4 cut(s)	600, 632, 821, 853
FatI	CATG	2 cut(s)	235, 807
FauNDI	CATATG	1 cut(s)	193
FokI	GGATG	1 cut(s)	160
FspBI	CTAG	1 cut(s)	18
GsaI	CCCAGC	2 cut(s)	67, 630
GsuI	CTGGAG	1 cut(s)	204
HaeIII	GGCC	1 cut(s)	69
HgaI	GACGC	1 cut(s)	101
Hin1I	GRCGYC	1 cut(s)	93
Hin1II	CATG	2 cut(s)	239, 811
HinfI	GANTC	4 cut(s)	296, 395, 729, 821
HphI	GGTGA	1 cut(s)	802
Hpy166II	GTNNAC	1 cut(s)	780
Hpy188I	TCNGA	4 cut(s)	12, 400, 519, 894
Hpy188III	TCNNGA	1 cut(s)	711
Hpy8I	GTNNAC	1 cut(s)	780
HpyAV	CCTTC	4 cut(s)	339, 409, 787, 847
HpyCH4III	ACNGT	2 cut(s)	212, 843
HpyCH4IV	ACGT	1 cut(s)	160
HpyCH4V	TGCA	7 cut(s)	266, 362, 489, 563, 645, 662, 674
HpyF10VI	GCNNNNNNNGC	5 cut(s)	66, 75, 248, 509, 642
HpyF3I	CTNAG	5 cut(s)	225, 310, 516, 709, 774
HpySE526I	ACGT	1 cut(s)	160
Hsp92I	GRCGYC	1 cut(s)	93
Hsp92II	CATG	2 cut(s)	239, 811
Kzo9I	GATC	4 cut(s)	7, 652, 697, 889
LmnI	GCTCC	2 cut(s)	83, 185
Lsp1109I	GCAGC	6 cut(s)	103, 250, 346, 427, 499, 733
LweI	GCATC	1 cut(s)	250
MaeI	CTAG	1 cut(s)	18
MaeII	ACGT	1 cut(s)	160
MaeIII	GTNAC	1 cut(s)	466
MalI	GATC	4 cut(s)	9, 654, 699, 891
MboI	GATC	4 cut(s)	7, 652, 697, 889
MflI	RGATCY	2 cut(s)	652, 697
MluCI	AATT	7 cut(s)	121, 325, 378, 506, 546, 558, 797
MlyI	GAGTC	1 cut(s)	305
MmeI	TCCRAC	2 cut(s)	725, 858
MnlI	CCTC	4 cut(s)	80, 547, 682, 874
Mph1103I	ATGCAT	1 cut(s)	676
MseI	TTAA	4 cut(s)	218, 351, 621, 734
MslI	CAYNNNNRTG	1 cut(s)	785
MspA1I	CMGCKG	1 cut(s)	98
MspR9I	CCNGG	1 cut(s)	145
MvaI	CCWGG	1 cut(s)	145
MwoI	GCNNNNNNNGC	5 cut(s)	66, 75, 248, 509, 642
NdeI	CATATG	1 cut(s)	193
NdeII	GATC	4 cut(s)	7, 652, 697, 889
NlaIII	CATG	2 cut(s)	239, 811
NlaIV	GGNNCC	3 cut(s)	68, 79, 699
NmeAIII	GCCGAG	2 cut(s)	36, 409
NsiI	ATGCAT	1 cut(s)	676
NspV	TTCGAA	1 cut(s)	33
OliI	CACNNNNGTG	1 cut(s)	785
PfeI	GAWTC	3 cut(s)	395, 729, 821
PflMI	CCANNNNNTGG	1 cut(s)	144
PfoI	TCCNGGA	1 cut(s)	143
PleI	GAGTC	1 cut(s)	304
PpsI	GAGTC	1 cut(s)	304
Psp6I	CCWGG	1 cut(s)	143
PspFI	CCCAGC	2 cut(s)	63, 626
PspGI	CCWGG	1 cut(s)	143
PspN4I	GGNNCC	3 cut(s)	68, 79, 699
PspPI	GGNCC	1 cut(s)	67
PsuI	RGATCY	2 cut(s)	652, 697
RsaI	GTAC	1 cut(s)	725
RsaNI	GTAC	1 cut(s)	724
RseI	CAYNNNNRTG	1 cut(s)	785
SaqAI	TTAA	4 cut(s)	218, 351, 621, 734
Sau3AI	GATC	4 cut(s)	7, 652, 697, 889
Sau96I	GGNCC	1 cut(s)	67
SchI	GAGTC	1 cut(s)	305
ScrFI	CCNGG	1 cut(s)	145
SfaNI	GCATC	1 cut(s)	250
SfuI	TTCGAA	1 cut(s)	33
SmiMI	CAYNNNNRTG	1 cut(s)	785
Sse9I	AATT	7 cut(s)	121, 325, 378, 506, 546, 558, 797
SsiI	CCGC	5 cut(s)	44, 60, 96, 243, 568
SspMI	CTAG	1 cut(s)	18
StyD4I	CCNGG	1 cut(s)	143
StyI	CCWWGG	1 cut(s)	870
TaaI	ACNGT	2 cut(s)	212, 843
TaiI	ACGT	1 cut(s)	163
TaqI	TCGA	2 cut(s)	33, 108
TasI	AATT	7 cut(s)	121, 325, 378, 506, 546, 558, 797
TatI	WGTACW	1 cut(s)	723
TauI	GCSGC	4 cut(s)	63, 98, 245, 571
TfiI	GAWTC	3 cut(s)	395, 729, 821
Tru1I	TTAA	4 cut(s)	218, 351, 621, 734
Tru9I	TTAA	4 cut(s)	218, 351, 621, 734
TscAI	CASTG	3 cut(s)	491, 787, 822
TseI	GCWGC	6 cut(s)	116, 263, 359, 440, 512, 746
TspDTI	ATGAA	5 cut(s)	252, 408, 447, 474, 774
TspRI	CASTG	3 cut(s)	491, 787, 822
Van91I	CCANNNNNTGG	1 cut(s)	144
XapI	RAATTY	3 cut(s)	325, 546, 797
XcmI	CCANNNNNNNNNTGG	2 cut(s)	145, 822
XspI	CTAG	1 cut(s)	18
Zsp2I	ATGCAT	1 cut(s)	676

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.