Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000809.1

Orthogroup ID

OG0012451

Physical Location & Seq

Genomic Coordinates Forward (+)

108035 .. 111432

Gene Structure 3398 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000809.1_g000022.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 774 bp

atgcttgaaatggtgttcatgtacaatcaagttctgacttattatcgcggggacagagctggagcaacatatgtcaagttggcaaactgtcatttaaagactgagagcaaacatgaagccgccacagcttatgttgatgctgcacattgctacaagaaaacatctgtaaatgagtccatttcttgcttagagcagggtgtaaatttgctttgtgatattggaaggcttaatatggctgcaagatactataaggaaattgccgagttatatgaatctgaacaaaacattgagaaggctattgacttctatgaaagagctgctgattttttccaaaatgaagaagtaacaacttctgccaaccagtgcaagcagaaagttgctcaatttgctgctcagattgaacaatatcccaagtctattcaaatttatgaggaaattgcacggcactcgctcaacaacaacttgctgaagtatggggtcaaaggacatcttcttaatgctgggatatgccaactttgcaaaggagatcctgttgcaatcagcaatgcattagagaaatacgaggatttggatccaactttctcaggaacaagggagtacagattcttaaaggatattgctgcttcgcttgatgaagaagatgttgctaagttcactgatgtggtgaaggaatttgatagcatgaccccactggattcttggaagaccaccttactgttgagagtgaaggaaaagctgaaagccaaggagttggaggaagatgatctgacctaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000149 GO:0003674 GO:0005483 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005886 GO:0005911 GO:0006810 GO:0006886 GO:0008104 GO:0008150 GO:0009506 GO:0009987 GO:0015031 GO:0015833 GO:0016020 GO:0016043 GO:0016192 GO:0019905 GO:0022411 GO:0030054 GO:0031090 GO:0031201 GO:0032984 GO:0032991 GO:0033036 GO:0034613 GO:0035494 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043624 GO:0043933 GO:0044422 GO:0044424 GO:0044425 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0045184 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0055044 GO:0061024 GO:0061025 GO:0070727 GO:0071702 GO:0071705 GO:0071840 GO:0071944 GO:0098588 GO:0098796 GO:0098805

KEGG Pathways

Metabolic & Signaling

ko04138 ko04721 map04138 map04721

Pfam Domains

Protein Families

SNAP

Protein Analysis

257

Amino Acids

29.34

Weight (kDa)

5.06

Isoelectric Point (pI)

31.09

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012451)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G56190 AT3G56190
fragaria_vesca	FvH4_7g25480
malus_domestica	MD01G1161100.v1.1 MD07G1229100.v1.1
prunus_persica	Prupe.2G259200_v2.0.a1 Prupe.2G259200_v2.0.a1
pyrus_communis	pycom01g17690 pycom07g20730
rosa_chinensis	RchiOBHm_Chr1g0371441
rosa_laevigata	RLG00000026961
rosa_multiflora	Rmu_sc0000809.1_g000022
rosa_roxburghii	Rroxscaffold_4G00285680
rosa_rugosa	Rorug01G0364000
rosa_samantha	Rh1AG374200 Rh1BG337600 Rh1CG350900 Rh1DG368600
rosa_wichuraiana	Rw1G032910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	48
AciI	CCGC	2 cut(s)	48, 120
AclWI	GGATC	3 cut(s)	521, 566, 579
AcsI	RAATTY	3 cut(s)	202, 423, 671
AcuI	CTGAAG	1 cut(s)	488
AfaI	GTAC	2 cut(s)	23, 599
AgsI	TTSAA	3 cut(s)	8, 401, 422
AleI	CACNNNNGTG	1 cut(s)	659
AluBI	AGCT	4 cut(s)	59, 128, 317, 736
AluI	AGCT	4 cut(s)	59, 128, 317, 736
AlwI	GGATC	3 cut(s)	521, 566, 579
ApeKI	GCWGC	5 cut(s)	140, 236, 317, 389, 620
ApoI	RAATTY	3 cut(s)	202, 423, 671
AsuHPI	GGTGA	1 cut(s)	676
BamHI	GGATCC	1 cut(s)	571
BbsI	GAAGAC	1 cut(s)	710
BbvI	GCAGC	5 cut(s)	127, 223, 304, 376, 607
BceAI	ACGGC	1 cut(s)	458
BcgI	CGANNNNNNTGC	2 cut(s)	429, 463
BisI	GCNGC	6 cut(s)	120, 141, 237, 318, 390, 621
BlsI	GCNGC	6 cut(s)	121, 142, 238, 319, 391, 622
BmiI	GGNNCC	1 cut(s)	573
BmsI	GCATC	1 cut(s)	127
BpiI	GAAGAC	1 cut(s)	710
BpmI	CTGGAG	1 cut(s)	81
BsaBI	GATNNNNATC	1 cut(s)	570
BsaJI	CCNNGG	1 cut(s)	744
BsaXI	ACNNNNNCTCC	2 cut(s)	516, 546
Bse1I	ACTGG	2 cut(s)	361, 696
Bse3DI	GCAATG	2 cut(s)	145, 550
Bse8I	GATNNNNATC	1 cut(s)	570
BseDI	CCNNGG	1 cut(s)	744
BseJI	GATNNNNATC	1 cut(s)	570
BseMI	GCAATG	2 cut(s)	145, 550
BseMII	CTCAG	3 cut(s)	93, 407, 597
BseNI	ACTGG	2 cut(s)	361, 696
BseXI	GCAGC	5 cut(s)	127, 223, 304, 376, 607
BseYI	CCCAGC	1 cut(s)	500
BsgI	GTGCAG	1 cut(s)	126
Bsh1236I	CGCG	1 cut(s)	48
BslFI	GGGAC	1 cut(s)	65
BsmFI	GGGAC	1 cut(s)	65
Bsp1407I	TGTACA	1 cut(s)	21
Bsp143I	GATC	3 cut(s)	526, 571, 763
BspACI	CCGC	2 cut(s)	48, 120
BspCNI	CTCAG	3 cut(s)	94, 406, 596
BspFNI	CGCG	1 cut(s)	48
BspLI	GGNNCC	1 cut(s)	573
BspPI	GGATC	3 cut(s)	521, 566, 579
BsrDI	GCAATG	2 cut(s)	145, 550
BsrGI	TGTACA	1 cut(s)	21
BsrI	ACTGG	2 cut(s)	361, 696
BssECI	CCNNGG	1 cut(s)	744
BssMI	GATC	3 cut(s)	526, 571, 763
BssT1I	CCWWGG	1 cut(s)	744
Bst4CI	ACNGT	2 cut(s)	89, 717
BstAUI	TGTACA	1 cut(s)	21
BstC8I	GCNNGC	1 cut(s)	368
BstDEI	CTNAG	5 cut(s)	102, 187, 393, 583, 648
BstFNI	CGCG	1 cut(s)	48
BstKTI	GATC	3 cut(s)	529, 574, 766
BstMBI	GATC	3 cut(s)	526, 571, 763
BstMWI	GCNNNNNNNGC	3 cut(s)	125, 386, 516
BstUI	CGCG	1 cut(s)	48
BstV1I	GCAGC	5 cut(s)	127, 223, 304, 376, 607
BstV2I	GAAGAC	1 cut(s)	710
BstX2I	RGATCY	2 cut(s)	526, 571
BstXI	CCANNNNNNTGG	1 cut(s)	751
BstYI	RGATCY	2 cut(s)	526, 571
BtsIMutI	CAGTG	3 cut(s)	368, 654, 689
Cac8I	GCNNGC	1 cut(s)	368
Csp6I	GTAC	2 cut(s)	22, 598
CviAII	CATG	3 cut(s)	19, 113, 682
CviJI	RGCY	9 cut(s)	59, 119, 128, 226, 236, 296, 317, 736, 743
CviKI_1	RGCY	9 cut(s)	59, 119, 128, 226, 236, 296, 317, 736, 743
CviQI	GTAC	2 cut(s)	22, 598
DdeI	CTNAG	5 cut(s)	102, 187, 393, 583, 648
DpnI	GATC	3 cut(s)	528, 573, 765
DpnII	GATC	3 cut(s)	526, 571, 763
DraI	TTTAAA	1 cut(s)	96
Eco130I	CCWWGG	1 cut(s)	744
Eco57I	CTGAAG	1 cut(s)	488
EcoT14I	CCWWGG	1 cut(s)	744
EcoT22I	ATGCAT	1 cut(s)	550
ErhI	CCWWGG	1 cut(s)	744
FaeI	CATG	3 cut(s)	22, 116, 685
FalI	AAGNNNNNCTT	4 cut(s)	474, 506, 695, 727
FaqI	GGGAC	1 cut(s)	65
FatI	CATG	3 cut(s)	18, 112, 681
FauI	CCCGC	1 cut(s)	41
FauNDI	CATATG	1 cut(s)	70
Fnu4HI	GCNGC	6 cut(s)	120, 141, 237, 318, 390, 621
Fsp4HI	GCNGC	6 cut(s)	120, 141, 237, 318, 390, 621
GluI	GCNGC	6 cut(s)	120, 141, 237, 318, 390, 621
GsaI	CCCAGC	1 cut(s)	504
GsuI	CTGGAG	1 cut(s)	81
Hin1II	CATG	3 cut(s)	22, 116, 685
HinfI	GANTC	4 cut(s)	173, 272, 603, 695
HphI	GGTGA	1 cut(s)	676
Hpy166II	GTNNAC	1 cut(s)	654
Hpy188I	TCNGA	4 cut(s)	36, 277, 396, 768
Hpy188III	TCNNGA	1 cut(s)	585
Hpy8I	GTNNAC	1 cut(s)	654
HpyAV	CCTTC	4 cut(s)	216, 286, 661, 721
HpyCH4III	ACNGT	2 cut(s)	89, 717
HpyCH4V	TGCA	7 cut(s)	143, 239, 366, 440, 519, 536, 548
HpyF10VI	GCNNNNNNNGC	3 cut(s)	125, 386, 516
HpyF3I	CTNAG	5 cut(s)	102, 187, 393, 583, 648
Hsp92II	CATG	3 cut(s)	22, 116, 685
Kzo9I	GATC	3 cut(s)	526, 571, 763
LmnI	GCTCC	1 cut(s)	62
LpnPI	CCDG	7 cut(s)	45, 179, 374, 486, 543, 570, 677
Lsp1109I	GCAGC	5 cut(s)	127, 223, 304, 376, 607
LweI	GCATC	1 cut(s)	127
MaeIII	GTNAC	1 cut(s)	343
MalI	GATC	3 cut(s)	528, 573, 765
MboI	GATC	3 cut(s)	526, 571, 763
MboII	GAAGA	6 cut(s)	350, 482, 647, 650, 715, 770
MflI	RGATCY	2 cut(s)	526, 571
MluCI	AATT	6 cut(s)	202, 255, 383, 423, 435, 671
MlyI	GAGTC	1 cut(s)	182
MmeI	TCCRAC	2 cut(s)	599, 732
MnlI	CCTC	3 cut(s)	424, 556, 748
Mph1103I	ATGCAT	1 cut(s)	550
MseI	TTAA	4 cut(s)	95, 228, 495, 608
MslI	CAYNNNNRTG	1 cut(s)	659
MvnI	CGCG	1 cut(s)	48
MwoI	GCNNNNNNNGC	3 cut(s)	125, 386, 516
NdeI	CATATG	1 cut(s)	70
NdeII	GATC	3 cut(s)	526, 571, 763
NlaIII	CATG	3 cut(s)	22, 116, 685
NlaIV	GGNNCC	1 cut(s)	573
NmeAIII	GCCGAG	1 cut(s)	286
NsiI	ATGCAT	1 cut(s)	550
OliI	CACNNNNGTG	1 cut(s)	659
PfeI	GAWTC	3 cut(s)	272, 603, 695
PkrI	GCNGC	6 cut(s)	121, 142, 238, 319, 391, 622
PleI	GAGTC	1 cut(s)	181
PpsI	GAGTC	1 cut(s)	181
PspFI	CCCAGC	1 cut(s)	500
PspN4I	GGNNCC	1 cut(s)	573
PsuI	RGATCY	2 cut(s)	526, 571
RsaI	GTAC	2 cut(s)	23, 599
RsaNI	GTAC	2 cut(s)	22, 598
RseI	CAYNNNNRTG	1 cut(s)	659
SaqAI	TTAA	4 cut(s)	95, 228, 495, 608
SatI	GCNGC	6 cut(s)	120, 141, 237, 318, 390, 621
Sau3AI	GATC	3 cut(s)	526, 571, 763
SchI	GAGTC	1 cut(s)	182
SetI	ASST	6 cut(s)	61, 130, 319, 713, 738, 773
SfaNI	GCATC	1 cut(s)	127
SmiMI	CAYNNNNRTG	1 cut(s)	659
Sse9I	AATT	6 cut(s)	202, 255, 383, 423, 435, 671
SsiI	CCGC	2 cut(s)	48, 120
StyI	CCWWGG	1 cut(s)	744
TaaI	ACNGT	2 cut(s)	89, 717
TasI	AATT	6 cut(s)	202, 255, 383, 423, 435, 671
TatI	WGTACW	2 cut(s)	21, 597
TauI	GCSGC	1 cut(s)	122
TfiI	GAWTC	3 cut(s)	272, 603, 695
Tru1I	TTAA	4 cut(s)	95, 228, 495, 608
Tru9I	TTAA	4 cut(s)	95, 228, 495, 608
TscAI	CASTG	3 cut(s)	368, 661, 696
TseI	GCWGC	5 cut(s)	140, 236, 317, 389, 620
TspDTI	ATGAA	6 cut(s)	7, 129, 285, 324, 351, 648
TspRI	CASTG	3 cut(s)	368, 661, 696
XapI	RAATTY	3 cut(s)	202, 423, 671
XcmI	CCANNNNNNNNNTGG	1 cut(s)	696
Zsp2I	ATGCAT	1 cut(s)	550

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.