Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0012451

Physical Location & Seq

Genomic Coordinates Reverse (-)

19429772 .. 19433820

Gene Structure 4049 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g25480.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 894 bp

ATGTCTTCAAATCAAAAACCGAACGAGCACACTGCGAGGGCTGAGGATTTCGAACGCAAAGCGGAGAAGAAGCTCGCCGGTTGGGGCCTCTTCAGCTCCAAATACGAAGACGCCGCTGAACTCTTCGATAAAGCTGCAAATTCCTACAAGCTCGGCAAAGAATGGGACAAAGCTGGAGCAGCTTTTGTGAAGTTGGCAAACTGTCACTTGAAGACTGAAAGCAAACATGAAGCTGCCACATCTTATGTTGATGCCGCACATTGCTACAAGAAAATACCTCTATCTGTAAATGAGGCCATTTCTTGCTTACAGCAGGGTATAAATTTGCTTTGTGATATTGGAAGGCTTAATATGGCTGCAAGATACTATAAGGAAATTGCCGAGTTATATGAATCTGAACAAAATATAGAGAAGGCTATTGACTTCTATGAAAAAGCAGCTGACTTTTTCCAAAACGAAGAAGTAACAACTTCTGCCAACACGTGCAAGCTGAAAGTTGCTCAATTTGCTGCTCAGATCGAACAATATCCCAAGTCTATTCAAATATTTGAGGAAATTGCACGGCACTCGCTCAACAACAACTTGCTTAAGTATGGGGTCAAAGGTCATCTTCTTAATGCTGGCATATGCCAACTCTGCAAAGGAGATCCTGTTGCAATCAGCAATGCATTAGAGAAATATGAGGAGTTGGATCCAACTTTCTCAGGAACAAGGGAGTATAGATTCTTAAAGGATATTGCTGCTTCGCTTGATGAAGAAGATGTTGGAAAGTTCACTGATGTGGTGAAGGAATTTGATAGCATGACCGCACTGGATTCTTGGAAGACCACATTACTCTTGAGAGTGAAGGAAAAGCTGAAAGCCAAGGAGTTGGAGGACGAAGACCTGACCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000149 GO:0003674 GO:0005483 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005886 GO:0005911 GO:0006810 GO:0006886 GO:0008104 GO:0008150 GO:0009506 GO:0009987 GO:0015031 GO:0015833 GO:0016020 GO:0016043 GO:0016192 GO:0019905 GO:0022411 GO:0030054 GO:0031090 GO:0031201 GO:0032984 GO:0032991 GO:0033036 GO:0034613 GO:0035494 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043624 GO:0043933 GO:0044422 GO:0044424 GO:0044425 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0045184 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0055044 GO:0061024 GO:0061025 GO:0070727 GO:0071702 GO:0071705 GO:0071840 GO:0071944 GO:0098588 GO:0098796 GO:0098805

KEGG Pathways

Metabolic & Signaling

ko04138 ko04721 map04138 map04721

Pfam Domains

Protein Families

SNAP

Protein Analysis

298

Amino Acids

33.54

Weight (kDa)

5.29

Isoelectric Point (pI)

28.07

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SNAP	PF14938	13 - 286	1.2e-109	Soluble NSF attachment protein, SNAP

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0012451)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G56190 AT3G56190
fragaria_vesca	FvH4_7g25480
malus_domestica	MD01G1161100.v1.1 MD07G1229100.v1.1
prunus_persica	Prupe.2G259200_v2.0.a1 Prupe.2G259200_v2.0.a1
pyrus_communis	pycom01g17690 pycom07g20730
rosa_chinensis	RchiOBHm_Chr1g0371441
rosa_laevigata	RLG00000026961
rosa_multiflora	Rmu_sc0000809.1_g000022
rosa_roxburghii	Rroxscaffold_4G00285680
rosa_rugosa	Rorug01G0364000
rosa_samantha	Rh1AG374200 Rh1BG337600 Rh1CG350900 Rh1DG368600
rosa_wichuraiana	Rw1G032910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	4 cut(s)	62, 114, 255, 807
AclWI	GGATC	3 cut(s)	641, 686, 699
AcsI	RAATTY	3 cut(s)	139, 322, 791
AcuI	CTGAAG	1 cut(s)	76
AcvI	CACGTG	1 cut(s)	483
AcyI	GRCGYC	1 cut(s)	111
AflII	CTTAAG	1 cut(s)	587
AflIII	ACRYGT	1 cut(s)	480
AgsI	TTSAA	3 cut(s)	9, 211, 542
AjuI	GAANNNNNNNTTGG	2 cut(s)	747, 779
AleI	CACNNNNGTG	1 cut(s)	779
Alw21I	GWGCWC	1 cut(s)	30
AlwI	GGATC	3 cut(s)	641, 686, 699
AoxI	GGCC	2 cut(s)	85, 294
ApeKI	GCWGC	7 cut(s)	134, 179, 233, 356, 437, 509, 740
ApoI	RAATTY	3 cut(s)	139, 322, 791
AspS9I	GGNCC	1 cut(s)	85
AsuHPI	GGTGA	1 cut(s)	796
AsuII	TTCGAA	1 cut(s)	51
BamHI	GGATCC	1 cut(s)	691
BbrPI	CACGTG	1 cut(s)	483
BbsI	GAAGAC	4 cut(s)	114, 218, 830, 888
Bbv12I	GWGCWC	1 cut(s)	30
BbvCI	CCTCAGC	1 cut(s)	42
BbvI	GCAGC	7 cut(s)	121, 191, 220, 343, 449, 496, 727
BceAI	ACGGC	1 cut(s)	578
BcgI	CGANNNNNNTGC	6 cut(s)	14, 48, 116, 150, 549, 583
BfrI	CTTAAG	1 cut(s)	587
BisI	GCNGC	9 cut(s)	114, 135, 180, 234, 255, 357, 438, 510, 741
BlsI	GCNGC	9 cut(s)	115, 136, 181, 235, 256, 358, 439, 511, 742
BmgT120I	GGNCC	1 cut(s)	85
BmiI	GGNNCC	2 cut(s)	86, 693
BmsI	GCATC	1 cut(s)	241
BpiI	GAAGAC	4 cut(s)	114, 218, 830, 888
BpmI	CTGGAG	1 cut(s)	195
Bpu10I	CCTNAGC	1 cut(s)	42
Bpu14I	TTCGAA	1 cut(s)	51
BpuEI	CTTGAG	1 cut(s)	859
BsaAI	YACGTR	1 cut(s)	483
BsaHI	GRCGYC	1 cut(s)	111
BsaJI	CCNNGG	1 cut(s)	864
BsaXI	ACNNNNNCTCC	2 cut(s)	636, 666
Bse118I	RCCGGY	1 cut(s)	77
Bse1I	ACTGG	1 cut(s)	816
Bse3DI	GCAATG	2 cut(s)	259, 670
BseDI	CCNNGG	1 cut(s)	864
BseMI	GCAATG	2 cut(s)	259, 670
BseMII	CTCAG	3 cut(s)	33, 527, 717
BseNI	ACTGG	1 cut(s)	816
BseRI	GAGGAG	1 cut(s)	698
BseXI	GCAGC	7 cut(s)	121, 191, 220, 343, 449, 496, 727
BshFI	GGCC	2 cut(s)	87, 296
BsiHKAI	GWGCWC	1 cut(s)	30
BsiSI	CCGG	1 cut(s)	78
BslFI	GGGAC	1 cut(s)	179
BsmFI	GGGAC	1 cut(s)	179
BsnI	GGCC	2 cut(s)	87, 296
Bsp119I	TTCGAA	1 cut(s)	51
Bsp1286I	GDGCHC	1 cut(s)	30
Bsp143I	GATC	3 cut(s)	516, 646, 691
BspACI	CCGC	4 cut(s)	62, 114, 255, 807
BspANI	GGCC	2 cut(s)	87, 296
BspCNI	CTCAG	3 cut(s)	34, 526, 716
BspLI	GGNNCC	2 cut(s)	86, 693
BspPI	GGATC	3 cut(s)	641, 686, 699
BspT104I	TTCGAA	1 cut(s)	51
BspTI	CTTAAG	1 cut(s)	587
BsrDI	GCAATG	2 cut(s)	259, 670
BsrFI	RCCGGY	1 cut(s)	77
BsrI	ACTGG	1 cut(s)	816
BssAI	RCCGGY	1 cut(s)	77
BssECI	CCNNGG	1 cut(s)	864
BssMI	GATC	3 cut(s)	516, 646, 691
BssNI	GRCGYC	1 cut(s)	111
BssT1I	CCWWGG	1 cut(s)	864
Bst4CI	ACNGT	1 cut(s)	203
Bst6I	CTCTTC	2 cut(s)	95, 128
BstACI	GRCGYC	1 cut(s)	111
BstAFI	CTTAAG	1 cut(s)	587
BstBAI	YACGTR	1 cut(s)	483
BstBI	TTCGAA	1 cut(s)	51
BstC8I	GCNNGC	3 cut(s)	75, 488, 622
BstDEI	CTNAG	3 cut(s)	42, 513, 703
BstKTI	GATC	3 cut(s)	519, 649, 694
BstMBI	GATC	3 cut(s)	516, 646, 691
BstMWI	GCNNNNNNNGC	4 cut(s)	93, 179, 506, 636
BstV1I	GCAGC	7 cut(s)	121, 191, 220, 343, 449, 496, 727
BstV2I	GAAGAC	4 cut(s)	114, 218, 830, 888
BstX2I	RGATCY	2 cut(s)	646, 691
BstXI	CCANNNNNNTGG	1 cut(s)	871
BstYI	RGATCY	2 cut(s)	646, 691
BsuRI	GGCC	2 cut(s)	87, 296
BtsI	GCAGTG	1 cut(s)	30
BtsIMutI	CAGTG	3 cut(s)	30, 774, 809
Cac8I	GCNNGC	3 cut(s)	75, 488, 622
Cfr10I	RCCGGY	1 cut(s)	77
Cfr13I	GGNCC	1 cut(s)	85
CseI	GACGC	1 cut(s)	119
CviAII	CATG	2 cut(s)	227, 802
DdeI	CTNAG	3 cut(s)	42, 513, 703
DpnI	GATC	3 cut(s)	518, 648, 693
DpnII	GATC	3 cut(s)	516, 646, 691
Eam1104I	CTCTTC	2 cut(s)	95, 128
EarI	CTCTTC	2 cut(s)	95, 128
Eco130I	CCWWGG	1 cut(s)	864
Eco57I	CTGAAG	1 cut(s)	76
Eco72I	CACGTG	1 cut(s)	483
EcoO109I	RGGNCCY	1 cut(s)	85
EcoT14I	CCWWGG	1 cut(s)	864
EcoT22I	ATGCAT	1 cut(s)	670
ErhI	CCWWGG	1 cut(s)	864
FaeI	CATG	2 cut(s)	230, 805
FalI	AAGNNNNNCTT	2 cut(s)	594, 626
FaqI	GGGAC	1 cut(s)	179
FatI	CATG	2 cut(s)	226, 801
FauNDI	CATATG	1 cut(s)	626
Fnu4HI	GCNGC	9 cut(s)	114, 135, 180, 234, 255, 357, 438, 510, 741
Fsp4HI	GCNGC	9 cut(s)	114, 135, 180, 234, 255, 357, 438, 510, 741
GluI	GCNGC	9 cut(s)	114, 135, 180, 234, 255, 357, 438, 510, 741
GsuI	CTGGAG	1 cut(s)	195
HaeIII	GGCC	2 cut(s)	87, 296
HapII	CCGG	1 cut(s)	78
HgaI	GACGC	1 cut(s)	119
Hin1I	GRCGYC	1 cut(s)	111
Hin1II	CATG	2 cut(s)	230, 805
HinfI	GANTC	3 cut(s)	392, 723, 815
HpaII	CCGG	1 cut(s)	78
HphI	GGTGA	1 cut(s)	796
Hpy166II	GTNNAC	1 cut(s)	774
Hpy188I	TCNGA	2 cut(s)	397, 516
Hpy188III	TCNNGA	2 cut(s)	705, 838
Hpy8I	GTNNAC	1 cut(s)	774
HpyAV	CCTTC	4 cut(s)	336, 406, 781, 841
HpyCH4III	ACNGT	1 cut(s)	203
HpyCH4IV	ACGT	1 cut(s)	482
HpyCH4V	TGCA	7 cut(s)	137, 359, 486, 560, 639, 656, 668
HpyF10VI	GCNNNNNNNGC	4 cut(s)	93, 179, 506, 636
HpyF3I	CTNAG	3 cut(s)	42, 513, 703
HpySE526I	ACGT	1 cut(s)	482
Hsp92I	GRCGYC	1 cut(s)	111
Hsp92II	CATG	2 cut(s)	230, 805
Kzo9I	GATC	3 cut(s)	516, 646, 691
LmnI	GCTCC	2 cut(s)	101, 176
LpnPI	CCDG	7 cut(s)	91, 159, 299, 606, 663, 690, 797
Lsp1109I	GCAGC	7 cut(s)	121, 191, 220, 343, 449, 496, 727
LweI	GCATC	1 cut(s)	241
MaeII	ACGT	1 cut(s)	482
MaeIII	GTNAC	2 cut(s)	203, 463
MalI	GATC	3 cut(s)	518, 648, 693
MboI	GATC	3 cut(s)	516, 646, 691
MflI	RGATCY	2 cut(s)	646, 691
MhlI	GDGCHC	1 cut(s)	30
MluCI	AATT	6 cut(s)	139, 322, 375, 503, 555, 791
MmeI	TCCRAC	4 cut(s)	669, 719, 745, 852
MnlI	CCTC	8 cut(s)	30, 37, 98, 286, 288, 544, 676, 868
Mph1103I	ATGCAT	1 cut(s)	670
MseI	TTAA	4 cut(s)	348, 588, 615, 728
MslI	CAYNNNNRTG	1 cut(s)	779
MspA1I	CMGCKG	2 cut(s)	116, 440
MspCI	CTTAAG	1 cut(s)	587
MspI	CCGG	1 cut(s)	78
MwoI	GCNNNNNNNGC	4 cut(s)	93, 179, 506, 636
NdeI	CATATG	1 cut(s)	626
NdeII	GATC	3 cut(s)	516, 646, 691
NlaIII	CATG	2 cut(s)	230, 805
NlaIV	GGNNCC	2 cut(s)	86, 693
NmeAIII	GCCGAG	2 cut(s)	132, 406
NmuCI	GTSAC	1 cut(s)	203
NsiI	ATGCAT	1 cut(s)	670
NspV	TTCGAA	1 cut(s)	51
OliI	CACNNNNGTG	1 cut(s)	779
PfeI	GAWTC	3 cut(s)	392, 723, 815
PkrI	GCNGC	9 cut(s)	115, 136, 181, 235, 256, 358, 439, 511, 742
PmaCI	CACGTG	1 cut(s)	483
PmlI	CACGTG	1 cut(s)	483
Ppu21I	YACGTR	1 cut(s)	483
PspCI	CACGTG	1 cut(s)	483
PspN4I	GGNNCC	2 cut(s)	86, 693
PspPI	GGNCC	1 cut(s)	85
PsuI	RGATCY	2 cut(s)	646, 691
PvuII	CAGCTG	1 cut(s)	440
RseI	CAYNNNNRTG	1 cut(s)	779
SaqAI	TTAA	4 cut(s)	348, 588, 615, 728
SatI	GCNGC	9 cut(s)	114, 135, 180, 234, 255, 357, 438, 510, 741
Sau3AI	GATC	3 cut(s)	516, 646, 691
Sau96I	GGNCC	1 cut(s)	85
SduI	GDGCHC	1 cut(s)	30
SfaNI	GCATC	1 cut(s)	241
SfuI	TTCGAA	1 cut(s)	51
SmiMI	CAYNNNNRTG	1 cut(s)	779
SmlI	CTYRAG	2 cut(s)	587, 838
SmoI	CTYRAG	2 cut(s)	587, 838
Sse9I	AATT	6 cut(s)	139, 322, 375, 503, 555, 791
SsiI	CCGC	4 cut(s)	62, 114, 255, 807
SspI	AATATT	1 cut(s)	546
StyI	CCWWGG	1 cut(s)	864
TaaI	ACNGT	1 cut(s)	203
TaiI	ACGT	1 cut(s)	485
TaqI	TCGA	3 cut(s)	51, 126, 519
TasI	AATT	6 cut(s)	139, 322, 375, 503, 555, 791
TauI	GCSGC	2 cut(s)	116, 257
TfiI	GAWTC	3 cut(s)	392, 723, 815
Tru1I	TTAA	4 cut(s)	348, 588, 615, 728
Tru9I	TTAA	4 cut(s)	348, 588, 615, 728
TscAI	CASTG	3 cut(s)	37, 781, 816
TseFI	GTSAC	1 cut(s)	203
TseI	GCWGC	7 cut(s)	134, 179, 233, 356, 437, 509, 740
Tsp45I	GTSAC	1 cut(s)	203
TspDTI	ATGAA	4 cut(s)	243, 405, 444, 768
TspRI	CASTG	3 cut(s)	37, 781, 816
Vha464I	CTTAAG	1 cut(s)	587
XapI	RAATTY	3 cut(s)	139, 322, 791
Zsp2I	ATGCAT	1 cut(s)	670

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.