Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0012451

Physical Location & Seq

Genomic Coordinates Reverse (-)

60624880 .. 60629189

Gene Structure 4310 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ59552

Sequence Viewer

CDS Protein Promoter (2k)

Length: 870 bp

ATGGGAGACCAGATAGCTAAGGCTGAAGATTTGGAACGCAAAGCGGAGAAGAAGCTCGGCGGTTGGGGCCTCTTCGGCTCCAAATACGAAGACGCCGCCGAACTCTTCGATAAAGCTGCCAATTCCTACAAGCTCGCCAAATCCTGGGACAGAGCTGGAGCAACATATGTCAAGTTGGCAAACTGTCATTTAAAGACTGAGAGCAAACATGAAGCCGCCACAGCTTATGTTGATGCTGCACATTGCTACAAGAAAACATCTGTAAATGAGTCCATTTCTTGCTTAGAGCAGGGTGTAAATTTGCTTTGTGATATTGGAAGGCTTAATATGGCTGCAAGATACTATAAGGAAATTGCCGAGTTATATGAATCTGAACAAAACATTGAGAAGGCTATTGACTTCTATGAAAGAGCTGCTGATTTTTTCCAAAATGAAGAAGTAACAACTTCTGCCAACCAGTGCAAGCAGAAAGTTGCTCAATTTGCTGCTCAGATTGAACAATATCCCAAGTCTATTCAAATTTATGAGGAAATTGCACGGCACTCGCTCAACAACAACTTGCTGAAGTATGGGGTCAAAGGACATCTTCTTAATGCTGGGATATGCCAACTTTGCAAAGGAGATCCTGTTGCAATCAGCAATGCATTAGAGAAATACGAGGATTTGGATCCAACTTTCTCAGGAACAAGGGAGTACAGATTCTTAAAGGATATTGCTGCTTCGCTTGATGAAGAAGATGTTGCTAAGTTCACTGATGTGGTGAAGGAATTTGATAGCATGACCCCACTGGATTCTTGGAAGACCACCTTACTGTTGAGAGTGAAGGAAAAGCTGAAAGCCAAGGAGTTGGAGGAAGATGATCTGACCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000149 GO:0003674 GO:0005483 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005886 GO:0005911 GO:0006810 GO:0006886 GO:0008104 GO:0008150 GO:0009506 GO:0009987 GO:0015031 GO:0015833 GO:0016020 GO:0016043 GO:0016192 GO:0019905 GO:0022411 GO:0030054 GO:0031090 GO:0031201 GO:0032984 GO:0032991 GO:0033036 GO:0034613 GO:0035494 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043624 GO:0043933 GO:0044422 GO:0044424 GO:0044425 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0045184 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0055044 GO:0061024 GO:0061025 GO:0070727 GO:0071702 GO:0071705 GO:0071840 GO:0071944 GO:0098588 GO:0098796 GO:0098805

KEGG Pathways

Metabolic & Signaling

ko04138 ko04721 map04138 map04721

Pfam Domains

Protein Families

SNAP

Protein Analysis

289

Amino Acids

32.65

Weight (kDa)

5.14

Isoelectric Point (pI)

30.02

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SNAP	PF14938	7 - 278	1.2e-111	Soluble NSF attachment protein, SNAP
HEAT_Nup120	PF23300	51 - 187	8.5e-07	Nucleoporin Nup120, HEAT repeats

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0012451)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G56190 AT3G56190
fragaria_vesca	FvH4_7g25480
malus_domestica	MD01G1161100.v1.1 MD07G1229100.v1.1
prunus_persica	Prupe.2G259200_v2.0.a1 Prupe.2G259200_v2.0.a1
pyrus_communis	pycom01g17690 pycom07g20730
rosa_chinensis	RchiOBHm_Chr1g0371441
rosa_laevigata	RLG00000026961
rosa_multiflora	Rmu_sc0000809.1_g000022
rosa_roxburghii	Rroxscaffold_4G00285680
rosa_rugosa	Rorug01G0364000
rosa_samantha	Rh1AG374200 Rh1BG337600 Rh1CG350900 Rh1DG368600
rosa_wichuraiana	Rw1G032910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	144
AciI	CCGC	4 cut(s)	44, 60, 96, 216
AclWI	GGATC	3 cut(s)	617, 662, 675
AcsI	RAATTY	3 cut(s)	298, 519, 767
AcuI	CTGAAG	2 cut(s)	45, 584
AcyI	GRCGYC	1 cut(s)	93
AfaI	GTAC	1 cut(s)	695
AfiI	CCNNNNNNNGG	1 cut(s)	144
AgsI	TTSAA	2 cut(s)	497, 518
AjnI	CCWGG	1 cut(s)	143
AleI	CACNNNNGTG	1 cut(s)	755
AluBI	AGCT	8 cut(s)	17, 55, 116, 133, 155, 224, 413, 832
AluI	AGCT	8 cut(s)	17, 55, 116, 133, 155, 224, 413, 832
AlwI	GGATC	3 cut(s)	617, 662, 675
AoxI	GGCC	1 cut(s)	67
ApeKI	GCWGC	6 cut(s)	116, 236, 332, 413, 485, 716
ApoI	RAATTY	3 cut(s)	298, 519, 767
AspS9I	GGNCC	1 cut(s)	67
AsuHPI	GGTGA	1 cut(s)	772
BamHI	GGATCC	1 cut(s)	667
BbsI	GAAGAC	2 cut(s)	96, 806
BbvI	GCAGC	6 cut(s)	103, 223, 319, 400, 472, 703
BceAI	ACGGC	1 cut(s)	554
BcgI	CGANNNNNNTGC	4 cut(s)	98, 132, 525, 559
BciT130I	CCWGG	1 cut(s)	145
BglI	GCCNNNNNGGC	1 cut(s)	75
BisI	GCNGC	8 cut(s)	96, 117, 216, 237, 333, 414, 486, 717
BlsI	GCNGC	8 cut(s)	97, 118, 217, 238, 334, 415, 487, 718
Bme1390I	CCNGG	1 cut(s)	145
BmgT120I	GGNCC	1 cut(s)	67
BmiI	GGNNCC	3 cut(s)	68, 79, 669
BmrFI	CCNGG	1 cut(s)	145
BmsI	GCATC	1 cut(s)	223
BpiI	GAAGAC	2 cut(s)	96, 806
BpmI	CTGGAG	1 cut(s)	177
Bpu10I	CCTNAGC	1 cut(s)	18
BsaBI	GATNNNNATC	1 cut(s)	666
BsaHI	GRCGYC	1 cut(s)	93
BsaJI	CCNNGG	2 cut(s)	144, 840
BsaXI	ACNNNNNCTCC	2 cut(s)	612, 642
Bsc4I	CCNNNNNNNGG	1 cut(s)	144
Bse1I	ACTGG	2 cut(s)	457, 792
Bse3DI	GCAATG	2 cut(s)	241, 646
Bse8I	GATNNNNATC	1 cut(s)	666
BseBI	CCWGG	1 cut(s)	145
BseDI	CCNNGG	2 cut(s)	144, 840
BseJI	GATNNNNATC	1 cut(s)	666
BseLI	CCNNNNNNNGG	1 cut(s)	144
BseMI	GCAATG	2 cut(s)	241, 646
BseMII	CTCAG	3 cut(s)	189, 503, 693
BseNI	ACTGG	2 cut(s)	457, 792
BseXI	GCAGC	6 cut(s)	103, 223, 319, 400, 472, 703
BseYI	CCCAGC	1 cut(s)	596
BsgI	GTGCAG	1 cut(s)	222
BshFI	GGCC	1 cut(s)	69
BslFI	GGGAC	1 cut(s)	161
BslI	CCNNNNNNNGG	1 cut(s)	144
BsmFI	GGGAC	1 cut(s)	161
BsnI	GGCC	1 cut(s)	69
Bsp143I	GATC	3 cut(s)	622, 667, 859
BspACI	CCGC	4 cut(s)	44, 60, 96, 216
BspANI	GGCC	1 cut(s)	69
BspCNI	CTCAG	3 cut(s)	190, 502, 692
BspLI	GGNNCC	3 cut(s)	68, 79, 669
BspPI	GGATC	3 cut(s)	617, 662, 675
BsrDI	GCAATG	2 cut(s)	241, 646
BsrI	ACTGG	2 cut(s)	457, 792
BssECI	CCNNGG	2 cut(s)	144, 840
BssMI	GATC	3 cut(s)	622, 667, 859
BssNI	GRCGYC	1 cut(s)	93
BssT1I	CCWWGG	1 cut(s)	840
Bst2UI	CCWGG	1 cut(s)	145
Bst4CI	ACNGT	2 cut(s)	185, 813
Bst6I	CTCTTC	2 cut(s)	77, 110
BstACI	GRCGYC	1 cut(s)	93
BstC8I	GCNNGC	2 cut(s)	135, 464
BstDEI	CTNAG	6 cut(s)	18, 198, 283, 489, 679, 744
BstKTI	GATC	3 cut(s)	625, 670, 862
BstMBI	GATC	3 cut(s)	622, 667, 859
BstMWI	GCNNNNNNNGC	5 cut(s)	66, 75, 221, 482, 612
BstNI	CCWGG	1 cut(s)	145
BstSCI	CCNGG	1 cut(s)	143
BstV1I	GCAGC	6 cut(s)	103, 223, 319, 400, 472, 703
BstV2I	GAAGAC	2 cut(s)	96, 806
BstX2I	RGATCY	2 cut(s)	622, 667
BstXI	CCANNNNNNTGG	1 cut(s)	847
BstYI	RGATCY	2 cut(s)	622, 667
BsuRI	GGCC	1 cut(s)	69
BtsIMutI	CAGTG	3 cut(s)	464, 750, 785
Cac8I	GCNNGC	2 cut(s)	135, 464
Cfr13I	GGNCC	1 cut(s)	67
CseI	GACGC	1 cut(s)	101
Csp6I	GTAC	1 cut(s)	694
CviAII	CATG	2 cut(s)	209, 778
CviQI	GTAC	1 cut(s)	694
DdeI	CTNAG	6 cut(s)	18, 198, 283, 489, 679, 744
DpnI	GATC	3 cut(s)	624, 669, 861
DpnII	GATC	3 cut(s)	622, 667, 859
DraI	TTTAAA	1 cut(s)	192
Eam1104I	CTCTTC	2 cut(s)	77, 110
EarI	CTCTTC	2 cut(s)	77, 110
Eco130I	CCWWGG	1 cut(s)	840
Eco57I	CTGAAG	2 cut(s)	45, 584
EcoO109I	RGGNCCY	1 cut(s)	67
EcoRII	CCWGG	1 cut(s)	143
EcoT14I	CCWWGG	1 cut(s)	840
EcoT22I	ATGCAT	1 cut(s)	646
ErhI	CCWWGG	1 cut(s)	840
FaeI	CATG	2 cut(s)	212, 781
FalI	AAGNNNNNCTT	4 cut(s)	570, 602, 791, 823
FaqI	GGGAC	1 cut(s)	161
FatI	CATG	2 cut(s)	208, 777
FauNDI	CATATG	1 cut(s)	166
Fnu4HI	GCNGC	8 cut(s)	96, 117, 216, 237, 333, 414, 486, 717
Fsp4HI	GCNGC	8 cut(s)	96, 117, 216, 237, 333, 414, 486, 717
GluI	GCNGC	8 cut(s)	96, 117, 216, 237, 333, 414, 486, 717
GsaI	CCCAGC	1 cut(s)	600
GsuI	CTGGAG	1 cut(s)	177
HaeIII	GGCC	1 cut(s)	69
HgaI	GACGC	1 cut(s)	101
Hin1I	GRCGYC	1 cut(s)	93
Hin1II	CATG	2 cut(s)	212, 781
HinfI	GANTC	4 cut(s)	269, 368, 699, 791
HphI	GGTGA	1 cut(s)	772
Hpy166II	GTNNAC	1 cut(s)	750
Hpy188I	TCNGA	3 cut(s)	373, 492, 864
Hpy188III	TCNNGA	1 cut(s)	681
Hpy8I	GTNNAC	1 cut(s)	750
HpyAV	CCTTC	4 cut(s)	312, 382, 757, 817
HpyCH4III	ACNGT	2 cut(s)	185, 813
HpyCH4V	TGCA	7 cut(s)	239, 335, 462, 536, 615, 632, 644
HpyF10VI	GCNNNNNNNGC	5 cut(s)	66, 75, 221, 482, 612
HpyF3I	CTNAG	6 cut(s)	18, 198, 283, 489, 679, 744
Hsp92I	GRCGYC	1 cut(s)	93
Hsp92II	CATG	2 cut(s)	212, 781
Kzo9I	GATC	3 cut(s)	622, 667, 859
LmnI	GCTCC	2 cut(s)	83, 158
Lsp1109I	GCAGC	6 cut(s)	103, 223, 319, 400, 472, 703
LweI	GCATC	1 cut(s)	223
MaeIII	GTNAC	1 cut(s)	439
MalI	GATC	3 cut(s)	624, 669, 861
MboI	GATC	3 cut(s)	622, 667, 859
MflI	RGATCY	2 cut(s)	622, 667
MluCI	AATT	7 cut(s)	121, 298, 351, 479, 519, 531, 767
MlyI	GAGTC	1 cut(s)	278
MmeI	TCCRAC	2 cut(s)	695, 828
MnlI	CCTC	4 cut(s)	80, 520, 652, 844
Mph1103I	ATGCAT	1 cut(s)	646
MseI	TTAA	4 cut(s)	191, 324, 591, 704
MslI	CAYNNNNRTG	1 cut(s)	755
MspR9I	CCNGG	1 cut(s)	145
MvaI	CCWGG	1 cut(s)	145
MwoI	GCNNNNNNNGC	5 cut(s)	66, 75, 221, 482, 612
NdeI	CATATG	1 cut(s)	166
NdeII	GATC	3 cut(s)	622, 667, 859
NlaIII	CATG	2 cut(s)	212, 781
NlaIV	GGNNCC	3 cut(s)	68, 79, 669
NmeAIII	GCCGAG	2 cut(s)	36, 382
NsiI	ATGCAT	1 cut(s)	646
OliI	CACNNNNGTG	1 cut(s)	755
PfeI	GAWTC	3 cut(s)	368, 699, 791
PflMI	CCANNNNNTGG	1 cut(s)	144
PkrI	GCNGC	8 cut(s)	97, 118, 217, 238, 334, 415, 487, 718
PleI	GAGTC	1 cut(s)	277
PpsI	GAGTC	1 cut(s)	277
Psp6I	CCWGG	1 cut(s)	143
PspFI	CCCAGC	1 cut(s)	596
PspGI	CCWGG	1 cut(s)	143
PspN4I	GGNNCC	3 cut(s)	68, 79, 669
PspPI	GGNCC	1 cut(s)	67
PsuI	RGATCY	2 cut(s)	622, 667
RsaI	GTAC	1 cut(s)	695
RsaNI	GTAC	1 cut(s)	694
RseI	CAYNNNNRTG	1 cut(s)	755
SaqAI	TTAA	4 cut(s)	191, 324, 591, 704
SatI	GCNGC	8 cut(s)	96, 117, 216, 237, 333, 414, 486, 717
Sau3AI	GATC	3 cut(s)	622, 667, 859
Sau96I	GGNCC	1 cut(s)	67
SchI	GAGTC	1 cut(s)	278
ScrFI	CCNGG	1 cut(s)	145
SfaNI	GCATC	1 cut(s)	223
SmiMI	CAYNNNNRTG	1 cut(s)	755
Sse9I	AATT	7 cut(s)	121, 298, 351, 479, 519, 531, 767
SsiI	CCGC	4 cut(s)	44, 60, 96, 216
StyD4I	CCNGG	1 cut(s)	143
StyI	CCWWGG	1 cut(s)	840
TaaI	ACNGT	2 cut(s)	185, 813
TaqI	TCGA	1 cut(s)	108
TasI	AATT	7 cut(s)	121, 298, 351, 479, 519, 531, 767
TatI	WGTACW	1 cut(s)	693
TauI	GCSGC	2 cut(s)	98, 218
TfiI	GAWTC	3 cut(s)	368, 699, 791
Tru1I	TTAA	4 cut(s)	191, 324, 591, 704
Tru9I	TTAA	4 cut(s)	191, 324, 591, 704
TscAI	CASTG	3 cut(s)	464, 757, 792
TseI	GCWGC	6 cut(s)	116, 236, 332, 413, 485, 716
TspDTI	ATGAA	5 cut(s)	225, 381, 420, 447, 744
TspRI	CASTG	3 cut(s)	464, 757, 792
Van91I	CCANNNNNTGG	1 cut(s)	144
XapI	RAATTY	3 cut(s)	298, 519, 767
XcmI	CCANNNNNNNNNTGG	1 cut(s)	792
Zsp2I	ATGCAT	1 cut(s)	646

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.