Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0012451

Physical Location & Seq

Genomic Coordinates Forward (+)

7277954 .. 7282827

Gene Structure 4874 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000026961

Sequence Viewer

CDS Protein Promoter (2k)

Length: 816 bp

ATGGGAGATCAGATAGCCAGGGCTGAAGATTTCGAACGCAAAGCGGAGAAGAAGCTCGGCGGTTGGGGCCTCTTCGGCTCCAAATACGAAGACGCCGCTGAACTCTTCGATAAAGCTGCCAATTCCTACAAGCTGGCCAAATCCTGGGACAAAGCTGGAGCAACATATGTCAAGTTGGCAAACTGTCATTTAAAGACTGAGAGCAAACATGAAGCCGCCACAGCTTATGTTGATGCTGCACATTGCTACAAGAAAACATCTGTAAATGAGTCCATTTCTTGCTTAGAGCAGGGTGTAAATTTGCTTTGTGATATTGGAAGGCTTAATATGGCTGCAAGATACTATAAGGAAATTGCCGAGTTATATGAATCTGAACAAAACATTGAGAAGGCTATTGACTTCTATGAAAGAGCTGCTGATTTTTTCCAAAATGAAGAAGTAACAACTTCTGCCAACCAGTGCAAGCAGAAAGTTGCTCAATTTGCTGCTCAGATTGAACAATATCCCAAGTCTATTCAAATTTATGAGGAAATTGCACGGCACTCGCTCAACAACAACTTGCTGAAGTATGGGGTCAAAGGACATCTTCTTAATGCTGGGATATGCCAACTCTGCAAAGGAGATCCTGTTGCAATCAGCAATGCATTAGAGAAATACGAGGATTTGGATCCAACTTTCTCAGGAACAAGGGAGTACAGATTCTTAAAGGATATTGCTGCTTCGCTTGATGAAGAAGATGTTGCTAAGTTCACTGATGTGGTGAAGGATTTTGATAGCATGACCCCACTGGTACACGTCTCTTCAAATTTGATATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000149 GO:0003674 GO:0005483 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005886 GO:0005911 GO:0006810 GO:0006886 GO:0008104 GO:0008150 GO:0009506 GO:0009987 GO:0015031 GO:0015833 GO:0016020 GO:0016043 GO:0016192 GO:0019905 GO:0022411 GO:0030054 GO:0031090 GO:0031201 GO:0032984 GO:0032991 GO:0033036 GO:0034613 GO:0035494 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043624 GO:0043933 GO:0044422 GO:0044424 GO:0044425 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0045184 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0055044 GO:0061024 GO:0061025 GO:0070727 GO:0071702 GO:0071705 GO:0071840 GO:0071944 GO:0098588 GO:0098796 GO:0098805

KEGG Pathways

Metabolic & Signaling

ko04138 ko04721 map04138 map04721

Pfam Domains

Protein Families

SNAP

Protein Analysis

272

Amino Acids

30.43

Weight (kDa)

5.21

Isoelectric Point (pI)

28.87

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SNAP	PF14938	7 - 263	1.4e-102	Soluble NSF attachment protein, SNAP
HEAT_Nup120	PF23300	51 - 188	5.7e-07	Nucleoporin Nup120, HEAT repeats

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012451)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G56190 AT3G56190
fragaria_vesca	FvH4_7g25480
malus_domestica	MD01G1161100.v1.1 MD07G1229100.v1.1
prunus_persica	Prupe.2G259200_v2.0.a1 Prupe.2G259200_v2.0.a1
pyrus_communis	pycom01g17690 pycom07g20730
rosa_chinensis	RchiOBHm_Chr1g0371441
rosa_laevigata	RLG00000026961
rosa_multiflora	Rmu_sc0000809.1_g000022
rosa_roxburghii	Rroxscaffold_4G00285680
rosa_rugosa	Rorug01G0364000
rosa_samantha	Rh1AG374200 Rh1BG337600 Rh1CG350900 Rh1DG368600
rosa_wichuraiana	Rw1G032910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	144
AciI	CCGC	4 cut(s)	44, 60, 96, 216
AclWI	GGATC	3 cut(s)	617, 662, 675
AcoI	YGGCCR	1 cut(s)	135
AcsI	RAATTY	3 cut(s)	298, 519, 805
AcuI	CTGAAG	2 cut(s)	45, 584
AcyI	GRCGYC	1 cut(s)	93
AfaI	GTAC	2 cut(s)	695, 792
AfiI	CCNNNNNNNGG	1 cut(s)	144
AflIII	ACRYGT	1 cut(s)	793
AgsI	TTSAA	3 cut(s)	497, 518, 804
AjiI	CACGTC	1 cut(s)	796
AjnI	CCWGG	2 cut(s)	17, 143
AleI	CACNNNNGTG	1 cut(s)	755
AluBI	AGCT	6 cut(s)	55, 116, 133, 155, 224, 413
AluI	AGCT	6 cut(s)	55, 116, 133, 155, 224, 413
Alw26I	GTCTC	1 cut(s)	802
AlwI	GGATC	3 cut(s)	617, 662, 675
AoxI	GGCC	2 cut(s)	67, 135
ApeKI	GCWGC	6 cut(s)	116, 236, 332, 413, 485, 716
ApoI	RAATTY	3 cut(s)	298, 519, 805
AspS9I	GGNCC	1 cut(s)	67
AsuHPI	GGTGA	1 cut(s)	772
AsuII	TTCGAA	1 cut(s)	33
BalI	TGGCCA	1 cut(s)	137
BamHI	GGATCC	1 cut(s)	667
BbsI	GAAGAC	1 cut(s)	96
BbvI	GCAGC	6 cut(s)	103, 223, 319, 400, 472, 703
BceAI	ACGGC	1 cut(s)	554
BcgI	CGANNNNNNTGC	4 cut(s)	98, 132, 525, 559
BciT130I	CCWGG	2 cut(s)	19, 145
BcoDI	GTCTC	1 cut(s)	802
BglI	GCCNNNNNGGC	1 cut(s)	75
BisI	GCNGC	8 cut(s)	96, 117, 216, 237, 333, 414, 486, 717
BlsI	GCNGC	8 cut(s)	97, 118, 217, 238, 334, 415, 487, 718
Bme1390I	CCNGG	2 cut(s)	19, 145
BmgBI	CACGTC	1 cut(s)	796
BmgT120I	GGNCC	1 cut(s)	67
BmiI	GGNNCC	3 cut(s)	68, 79, 669
BmrFI	CCNGG	2 cut(s)	19, 145
BmsI	GCATC	1 cut(s)	223
BpiI	GAAGAC	1 cut(s)	96
BpmI	CTGGAG	1 cut(s)	177
Bpu14I	TTCGAA	1 cut(s)	33
BsaBI	GATNNNNATC	1 cut(s)	666
BsaHI	GRCGYC	1 cut(s)	93
BsaJI	CCNNGG	2 cut(s)	18, 144
BsaXI	ACNNNNNCTCC	2 cut(s)	612, 642
Bsc4I	CCNNNNNNNGG	1 cut(s)	144
Bse1I	ACTGG	2 cut(s)	457, 792
Bse3DI	GCAATG	2 cut(s)	241, 646
Bse8I	GATNNNNATC	1 cut(s)	666
BseBI	CCWGG	2 cut(s)	19, 145
BseDI	CCNNGG	2 cut(s)	18, 144
BseJI	GATNNNNATC	1 cut(s)	666
BseLI	CCNNNNNNNGG	1 cut(s)	144
BseMI	GCAATG	2 cut(s)	241, 646
BseMII	CTCAG	3 cut(s)	189, 503, 693
BseNI	ACTGG	2 cut(s)	457, 792
BseXI	GCAGC	6 cut(s)	103, 223, 319, 400, 472, 703
BseYI	CCCAGC	1 cut(s)	596
BsgI	GTGCAG	1 cut(s)	222
BshFI	GGCC	2 cut(s)	69, 137
BslFI	GGGAC	1 cut(s)	161
BslI	CCNNNNNNNGG	1 cut(s)	144
BsmAI	GTCTC	1 cut(s)	802
BsmBI	CGTCTC	1 cut(s)	802
BsmFI	GGGAC	1 cut(s)	161
BsnI	GGCC	2 cut(s)	69, 137
Bsp119I	TTCGAA	1 cut(s)	33
Bsp143I	GATC	3 cut(s)	7, 622, 667
BspACI	CCGC	4 cut(s)	44, 60, 96, 216
BspANI	GGCC	2 cut(s)	69, 137
BspCNI	CTCAG	3 cut(s)	190, 502, 692
BspLI	GGNNCC	3 cut(s)	68, 79, 669
BspPI	GGATC	3 cut(s)	617, 662, 675
BspT104I	TTCGAA	1 cut(s)	33
BsrDI	GCAATG	2 cut(s)	241, 646
BsrI	ACTGG	2 cut(s)	457, 792
BssECI	CCNNGG	2 cut(s)	18, 144
BssMI	GATC	3 cut(s)	7, 622, 667
BssNI	GRCGYC	1 cut(s)	93
Bst2UI	CCWGG	2 cut(s)	19, 145
Bst4CI	ACNGT	1 cut(s)	185
Bst6I	CTCTTC	3 cut(s)	77, 110, 805
BstACI	GRCGYC	1 cut(s)	93
BstBI	TTCGAA	1 cut(s)	33
BstC8I	GCNNGC	2 cut(s)	135, 464
BstDEI	CTNAG	5 cut(s)	198, 283, 489, 679, 744
BstKTI	GATC	3 cut(s)	10, 625, 670
BstMAI	GTCTC	1 cut(s)	802
BstMBI	GATC	3 cut(s)	7, 622, 667
BstMWI	GCNNNNNNNGC	5 cut(s)	66, 75, 221, 482, 612
BstNI	CCWGG	2 cut(s)	19, 145
BstSCI	CCNGG	2 cut(s)	17, 143
BstV1I	GCAGC	6 cut(s)	103, 223, 319, 400, 472, 703
BstV2I	GAAGAC	1 cut(s)	96
BstX2I	RGATCY	2 cut(s)	622, 667
BstYI	RGATCY	2 cut(s)	622, 667
BsuRI	GGCC	2 cut(s)	69, 137
BtrI	CACGTC	1 cut(s)	796
BtsIMutI	CAGTG	3 cut(s)	464, 750, 785
Cac8I	GCNNGC	2 cut(s)	135, 464
Cfr13I	GGNCC	1 cut(s)	67
CseI	GACGC	1 cut(s)	101
Csp6I	GTAC	2 cut(s)	694, 791
CviAII	CATG	2 cut(s)	209, 778
CviQI	GTAC	2 cut(s)	694, 791
DdeI	CTNAG	5 cut(s)	198, 283, 489, 679, 744
DpnI	GATC	3 cut(s)	9, 624, 669
DpnII	GATC	3 cut(s)	7, 622, 667
DraI	TTTAAA	1 cut(s)	192
EaeI	YGGCCR	1 cut(s)	135
Eam1104I	CTCTTC	3 cut(s)	77, 110, 805
EarI	CTCTTC	3 cut(s)	77, 110, 805
Eco57I	CTGAAG	2 cut(s)	45, 584
EcoO109I	RGGNCCY	1 cut(s)	67
EcoRII	CCWGG	2 cut(s)	17, 143
EcoT22I	ATGCAT	1 cut(s)	646
Esp3I	CGTCTC	1 cut(s)	802
FaeI	CATG	2 cut(s)	212, 781
FalI	AAGNNNNNCTT	2 cut(s)	570, 602
FaqI	GGGAC	1 cut(s)	161
FatI	CATG	2 cut(s)	208, 777
FauNDI	CATATG	1 cut(s)	166
Fnu4HI	GCNGC	8 cut(s)	96, 117, 216, 237, 333, 414, 486, 717
Fsp4HI	GCNGC	8 cut(s)	96, 117, 216, 237, 333, 414, 486, 717
GluI	GCNGC	8 cut(s)	96, 117, 216, 237, 333, 414, 486, 717
GsaI	CCCAGC	1 cut(s)	600
GsuI	CTGGAG	1 cut(s)	177
HaeIII	GGCC	2 cut(s)	69, 137
HgaI	GACGC	1 cut(s)	101
Hin1I	GRCGYC	1 cut(s)	93
Hin1II	CATG	2 cut(s)	212, 781
HinfI	GANTC	3 cut(s)	269, 368, 699
HphI	GGTGA	1 cut(s)	772
Hpy166II	GTNNAC	2 cut(s)	750, 793
Hpy188I	TCNGA	3 cut(s)	12, 373, 492
Hpy188III	TCNNGA	1 cut(s)	681
Hpy8I	GTNNAC	2 cut(s)	750, 793
HpyAV	CCTTC	3 cut(s)	312, 382, 757
HpyCH4III	ACNGT	1 cut(s)	185
HpyCH4IV	ACGT	1 cut(s)	795
HpyCH4V	TGCA	7 cut(s)	239, 335, 462, 536, 615, 632, 644
HpyF10VI	GCNNNNNNNGC	5 cut(s)	66, 75, 221, 482, 612
HpyF3I	CTNAG	5 cut(s)	198, 283, 489, 679, 744
HpySE526I	ACGT	1 cut(s)	795
Hsp92I	GRCGYC	1 cut(s)	93
Hsp92II	CATG	2 cut(s)	212, 781
Kzo9I	GATC	3 cut(s)	7, 622, 667
LmnI	GCTCC	2 cut(s)	83, 158
Lsp1109I	GCAGC	6 cut(s)	103, 223, 319, 400, 472, 703
LweI	GCATC	1 cut(s)	223
MaeII	ACGT	1 cut(s)	795
MaeIII	GTNAC	1 cut(s)	439
MalI	GATC	3 cut(s)	9, 624, 669
MboI	GATC	3 cut(s)	7, 622, 667
MflI	RGATCY	2 cut(s)	622, 667
MlsI	TGGCCA	1 cut(s)	137
MluCI	AATT	7 cut(s)	121, 298, 351, 479, 519, 531, 805
MluNI	TGGCCA	1 cut(s)	137
MlyI	GAGTC	1 cut(s)	278
MmeI	TCCRAC	1 cut(s)	695
MnlI	CCTC	3 cut(s)	80, 520, 652
Mox20I	TGGCCA	1 cut(s)	137
Mph1103I	ATGCAT	1 cut(s)	646
MscI	TGGCCA	1 cut(s)	137
MseI	TTAA	4 cut(s)	191, 324, 591, 704
MslI	CAYNNNNRTG	1 cut(s)	755
Msp20I	TGGCCA	1 cut(s)	137
MspA1I	CMGCKG	1 cut(s)	98
MspR9I	CCNGG	2 cut(s)	19, 145
MvaI	CCWGG	2 cut(s)	19, 145
MwoI	GCNNNNNNNGC	5 cut(s)	66, 75, 221, 482, 612
NdeI	CATATG	1 cut(s)	166
NdeII	GATC	3 cut(s)	7, 622, 667
NlaIII	CATG	2 cut(s)	212, 781
NlaIV	GGNNCC	3 cut(s)	68, 79, 669
NmeAIII	GCCGAG	2 cut(s)	36, 382
NsiI	ATGCAT	1 cut(s)	646
NspV	TTCGAA	1 cut(s)	33
OliI	CACNNNNGTG	1 cut(s)	755
PfeI	GAWTC	2 cut(s)	368, 699
PflMI	CCANNNNNTGG	1 cut(s)	144
PkrI	GCNGC	8 cut(s)	97, 118, 217, 238, 334, 415, 487, 718
PleI	GAGTC	1 cut(s)	277
PpsI	GAGTC	1 cut(s)	277
Psp6I	CCWGG	2 cut(s)	17, 143
PspFI	CCCAGC	1 cut(s)	596
PspGI	CCWGG	2 cut(s)	17, 143
PspN4I	GGNNCC	3 cut(s)	68, 79, 669
PspPI	GGNCC	1 cut(s)	67
PsuI	RGATCY	2 cut(s)	622, 667
RsaI	GTAC	2 cut(s)	695, 792
RsaNI	GTAC	2 cut(s)	694, 791
RseI	CAYNNNNRTG	1 cut(s)	755
SaqAI	TTAA	4 cut(s)	191, 324, 591, 704
SatI	GCNGC	8 cut(s)	96, 117, 216, 237, 333, 414, 486, 717
Sau3AI	GATC	3 cut(s)	7, 622, 667
Sau96I	GGNCC	1 cut(s)	67
SchI	GAGTC	1 cut(s)	278
ScrFI	CCNGG	2 cut(s)	19, 145
SetI	ASST	7 cut(s)	57, 118, 135, 157, 226, 415, 798
SfaNI	GCATC	1 cut(s)	223
SfuI	TTCGAA	1 cut(s)	33
SmiMI	CAYNNNNRTG	1 cut(s)	755
Sse9I	AATT	7 cut(s)	121, 298, 351, 479, 519, 531, 805
SsiI	CCGC	4 cut(s)	44, 60, 96, 216
StyD4I	CCNGG	2 cut(s)	17, 143
TaaI	ACNGT	1 cut(s)	185
TaiI	ACGT	1 cut(s)	798
TaqI	TCGA	2 cut(s)	33, 108
TasI	AATT	7 cut(s)	121, 298, 351, 479, 519, 531, 805
TatI	WGTACW	1 cut(s)	693
TauI	GCSGC	2 cut(s)	98, 218
TfiI	GAWTC	2 cut(s)	368, 699
Tru1I	TTAA	4 cut(s)	191, 324, 591, 704
Tru9I	TTAA	4 cut(s)	191, 324, 591, 704
TscAI	CASTG	3 cut(s)	464, 757, 792
TseI	GCWGC	6 cut(s)	116, 236, 332, 413, 485, 716
TspDTI	ATGAA	5 cut(s)	225, 381, 420, 447, 744
TspRI	CASTG	3 cut(s)	464, 757, 792
Van91I	CCANNNNNTGG	1 cut(s)	144
XapI	RAATTY	3 cut(s)	298, 519, 805
Zsp2I	ATGCAT	1 cut(s)	646

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.