Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0012451

Physical Location & Seq

Genomic Coordinates Forward (+)

47899419 .. 47901398

Gene Structure 1980 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0364000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 999 bp

ATGAAATCTTTGAGTAGTGTAGGACTTGGTTTGAGTGTGGTTTTTGGTTGCTTATTCTTGGCTCTAATTGCTGAGCTTTACTACTTGCTCTGGTGGAAGAAGAGGCTGACCAACAGAGAGATAGAAGATGACTACAGCAGCCCATCAAAGGAGGTGTTCTACATGTTCTGCTGGAGAAGGACTTCTAAGTCTTTGAGCCACATGGCTCAAAGTCCCCAACAGCTTTGTTCTTCATTCAGAATCACAGACACACTTGTCCATCAACCAAATGCTCAGCTTCAGCTTCATATGCACACAGCAAGCAACAATGATTTGCTGCTCAAACCCTTTGAAGAAGATGAACTGGATGCAGAGCTTATGAGGCTGCAAAGCGCTTCTGGGCCACCAAGACACCTCTTCACAATTGTAGAGGAAACAAAGGAGGACTTGGAATCTGAAGATGCGAAGTCTAGGTGTGGCGACAAGAGCCAAAAGGGGTCAAGAAGTAAGAGTTTGAGTGATTTGCTTATCACAGTGGAGACACCATATTTGACTCCTTTGGGCTCTCCAACTCTTTTCACACCTCCTCTCACTCCTGTGGACTCTCATAACCAACATGGATTCAATTTCAGTTCCCCTCTCTTTGAATCAAAGAGTGATGCAGAGTTCAACAGGATAAGGTCATCACCTCCTCCAAAGTTCAAGTTCTTGCAGGAAGCAGAGGAGAAACTTAGAGTGAAATTAAAGGAACAAGCTGAGGAGGGTCTTCAGAAGAATGATGGACCTGTTGAAGAGAAAGAGAGTAAAGCTAGTAAAGCTTCAATGTCAAAGTTCCTTAAAGATGAGGATCAAGATGGGTCTTATATCACCATAATTATTGACAAGAACAAAGAAAGGGAGCTCAATCACCATCTTCATCATCTACAACAACACCATTCAAGCACTTCACAGGTACTCCCACTAGTTTCTTCACCTTCAGCATTCAGATCATCAATCAACAAGAAGCCCACTTTACATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000149 GO:0003674 GO:0005483 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005886 GO:0005911 GO:0006810 GO:0006886 GO:0008104 GO:0008150 GO:0009506 GO:0009987 GO:0015031 GO:0015833 GO:0016020 GO:0016043 GO:0016192 GO:0019905 GO:0022411 GO:0030054 GO:0031090 GO:0031201 GO:0032984 GO:0032991 GO:0033036 GO:0034613 GO:0035494 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043624 GO:0043933 GO:0044422 GO:0044424 GO:0044425 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0045184 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0055044 GO:0061024 GO:0061025 GO:0070727 GO:0071702 GO:0071705 GO:0071840 GO:0071944 GO:0098588 GO:0098796 GO:0098805

KEGG Pathways

Metabolic & Signaling

ko04138 ko04721 map04138 map04721

Pfam Domains

Protein Families

SNAP

Protein Analysis

332

Amino Acids

37.76

Weight (kDa)

6.4

Isoelectric Point (pI)

66.18

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012451)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G56190 AT3G56190
fragaria_vesca	FvH4_7g25480
malus_domestica	MD01G1161100.v1.1 MD07G1229100.v1.1
prunus_persica	Prupe.2G259200_v2.0.a1 Prupe.2G259200_v2.0.a1
pyrus_communis	pycom01g17690 pycom07g20730
rosa_chinensis	RchiOBHm_Chr1g0371441
rosa_laevigata	RLG00000026961
rosa_multiflora	Rmu_sc0000809.1_g000022
rosa_roxburghii	Rroxscaffold_4G00285680
rosa_rugosa	Rorug01G0364000
rosa_samantha	Rh1AG374200 Rh1BG337600 Rh1CG350900 Rh1DG368600
rosa_wichuraiana	Rw1G032910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	187, 254
AclWI	GGATC	1 cut(s)	834
AcuI	CTGAAG	4 cut(s)	263, 456, 731, 939
AfaI	GTAC	1 cut(s)	933
AfeI	AGCGCT	1 cut(s)	373
AfiI	CCNNNNNNNGG	1 cut(s)	148
AflIII	ACRYGT	1 cut(s)	162
AgsI	TTSAA	8 cut(s)	332, 604, 626, 649, 682, 770, 801, 918
AhlI	ACTAGT	1 cut(s)	940
AleI	CACNNNNGTG	1 cut(s)	575
AluBI	AGCT	9 cut(s)	76, 223, 277, 283, 355, 734, 788, 797, 880
AluI	AGCT	9 cut(s)	76, 223, 277, 283, 355, 734, 788, 797, 880
Alw21I	GWGCWC	1 cut(s)	882
Alw26I	GTCTC	1 cut(s)	512
AlwI	GGATC	1 cut(s)	834
Aor51HI	AGCGCT	1 cut(s)	373
AoxI	GGCC	1 cut(s)	380
ApeKI	GCWGC	3 cut(s)	138, 316, 364
ArsI	GACNNNNNNTTYG	2 cut(s)	511, 543
Asp700I	GAANNNNTTC	1 cut(s)	181
AspLEI	GCGC	1 cut(s)	374
AspS9I	GGNCC	2 cut(s)	380, 761
AsuHPI	GGTGA	4 cut(s)	657, 838, 878, 942
AvaII	GGWCC	1 cut(s)	761
BanII	GRGCYC	2 cut(s)	545, 882
BbsI	GAAGAC	1 cut(s)	737
Bbv12I	GWGCWC	1 cut(s)	882
BbvCI	CCTCAGC	1 cut(s)	735
BbvI	GCAGC	3 cut(s)	150, 303, 351
BccI	CCATC	5 cut(s)	151, 267, 752, 827, 897
BcoDI	GTCTC	1 cut(s)	512
BcuI	ACTAGT	1 cut(s)	940
BfaI	CTAG	3 cut(s)	450, 789, 941
BfmI	CTRYAG	1 cut(s)	133
BfoI	RGCGCY	1 cut(s)	375
BisI	GCNGC	3 cut(s)	139, 317, 365
BlpI	GCTNAGC	2 cut(s)	72, 273
BlsI	GCNGC	3 cut(s)	140, 318, 366
Bme18I	GGWCC	1 cut(s)	761
BmgT120I	GGNCC	2 cut(s)	380, 761
BmsI	GCATC	3 cut(s)	337, 430, 628
BpiI	GAAGAC	1 cut(s)	737
BpmI	CTGGAG	1 cut(s)	193
Bpu10I	CCTNAGC	1 cut(s)	735
Bpu1102I	GCTNAGC	2 cut(s)	72, 273
BsaBI	GATNNNNATC	1 cut(s)	825
BsaXI	ACNNNNNCTCC	2 cut(s)	918, 948
Bsc4I	CCNNNNNNNGG	1 cut(s)	148
Bse1I	ACTGG	1 cut(s)	348
Bse8I	GATNNNNATC	1 cut(s)	825
BseGI	GGATG	1 cut(s)	352
BseJI	GATNNNNATC	1 cut(s)	825
BseLI	CCNNNNNNNGG	1 cut(s)	148
BseMII	CTCAG	3 cut(s)	63, 287, 726
BseNI	ACTGG	1 cut(s)	348
BseRI	GAGGAG	4 cut(s)	555, 660, 716, 752
BseXI	GCAGC	3 cut(s)	150, 303, 351
BshFI	GGCC	1 cut(s)	382
BsiHKAI	GWGCWC	1 cut(s)	882
BslFI	GGGAC	1 cut(s)	198
BslI	CCNNNNNNNGG	1 cut(s)	148
BsmAI	GTCTC	1 cut(s)	512
BsmFI	GGGAC	1 cut(s)	198
BsmI	GAATGC	1 cut(s)	959
BsnI	GGCC	1 cut(s)	382
Bsp1286I	GDGCHC	2 cut(s)	545, 882
Bsp143I	GATC	2 cut(s)	826, 965
Bsp1720I	GCTNAGC	2 cut(s)	72, 273
BspANI	GGCC	1 cut(s)	382
BspCNI	CTCAG	3 cut(s)	64, 286, 727
BspPI	GGATC	1 cut(s)	834
BsrI	ACTGG	1 cut(s)	348
BssMI	GATC	2 cut(s)	826, 965
Bst4CI	ACNGT	1 cut(s)	514
Bst6I	CTCTTC	3 cut(s)	95, 401, 765
BstC8I	GCNNGC	1 cut(s)	301
BstDEI	CTNAG	5 cut(s)	72, 186, 273, 710, 735
BstF5I	GGATG	1 cut(s)	352
BstH2I	RGCGCY	1 cut(s)	375
BstHHI	GCGC	1 cut(s)	374
BstKTI	GATC	2 cut(s)	829, 968
BstMAI	GTCTC	1 cut(s)	512
BstMBI	GATC	2 cut(s)	826, 965
BstMWI	GCNNNNNNNGC	5 cut(s)	68, 289, 361, 465, 794
BstNSI	RCATGY	1 cut(s)	166
BstSFI	CTRYAG	1 cut(s)	133
BstV1I	GCAGC	3 cut(s)	150, 303, 351
BstV2I	GAAGAC	1 cut(s)	737
BsuRI	GGCC	1 cut(s)	382
BtsCI	GGATG	1 cut(s)	352
BtsIMutI	CAGTG	1 cut(s)	519
Cac8I	GCNNGC	1 cut(s)	301
CfoI	GCGC	1 cut(s)	374
Cfr13I	GGNCC	2 cut(s)	380, 761
Csp6I	GTAC	1 cut(s)	932
CviAII	CATG	3 cut(s)	163, 202, 596
CviQI	GTAC	1 cut(s)	932
DdeI	CTNAG	5 cut(s)	72, 186, 273, 710, 735
DpnI	GATC	2 cut(s)	828, 967
DpnII	GATC	2 cut(s)	826, 965
DrdI	GACNNNNNNGTC	2 cut(s)	187, 254
DseDI	GACNNNNNNGTC	2 cut(s)	187, 254
Eam1104I	CTCTTC	3 cut(s)	95, 401, 765
EarI	CTCTTC	3 cut(s)	95, 401, 765
Ecl136II	GAGCTC	1 cut(s)	880
Eco24I	GRGCYC	2 cut(s)	545, 882
Eco47I	GGWCC	1 cut(s)	761
Eco47III	AGCGCT	1 cut(s)	373
Eco53kI	GAGCTC	1 cut(s)	880
Eco57I	CTGAAG	4 cut(s)	263, 456, 731, 939
EcoICRI	GAGCTC	1 cut(s)	880
EcoT38I	GRGCYC	2 cut(s)	545, 882
FaeI	CATG	3 cut(s)	166, 205, 599
FalI	AAGNNNNNCTT	2 cut(s)	410, 442
FaqI	GGGAC	1 cut(s)	198
FatI	CATG	3 cut(s)	162, 201, 595
FauNDI	CATATG	1 cut(s)	288
Fnu4HI	GCNGC	3 cut(s)	139, 317, 365
FokI	GGATG	1 cut(s)	359
FriOI	GRGCYC	2 cut(s)	545, 882
Fsp4HI	GCNGC	3 cut(s)	139, 317, 365
FspBI	CTAG	3 cut(s)	450, 789, 941
GlaI	GCGC	1 cut(s)	373
GluI	GCNGC	3 cut(s)	139, 317, 365
GsuI	CTGGAG	1 cut(s)	193
HaeII	RGCGCY	1 cut(s)	375
HaeIII	GGCC	1 cut(s)	382
HhaI	GCGC	1 cut(s)	374
Hin1II	CATG	3 cut(s)	166, 205, 599
Hin6I	GCGC	1 cut(s)	372
HinP1I	GCGC	1 cut(s)	372
HindIII	AAGCTT	1 cut(s)	795
HinfI	GANTC	6 cut(s)	240, 431, 532, 581, 600, 626
HphI	GGTGA	4 cut(s)	657, 838, 878, 942
Hpy166II	GTNNAC	1 cut(s)	580
Hpy188I	TCNGA	4 cut(s)	239, 436, 750, 965
Hpy188III	TCNNGA	2 cut(s)	480, 830
Hpy8I	GTNNAC	1 cut(s)	580
HpyAV	CCTTC	2 cut(s)	171, 963
HpyCH4III	ACNGT	1 cut(s)	514
HpyCH4V	TGCA	5 cut(s)	292, 350, 367, 641, 691
HpyF10VI	GCNNNNNNNGC	5 cut(s)	68, 289, 361, 465, 794
HpyF3I	CTNAG	5 cut(s)	72, 186, 273, 710, 735
Hsp92II	CATG	3 cut(s)	166, 205, 599
HspAI	GCGC	1 cut(s)	372
Kzo9I	GATC	2 cut(s)	826, 965
LmnI	GCTCC	1 cut(s)	877
LpnPI	CCDG	9 cut(s)	76, 157, 329, 363, 588, 637, 677, 777, 914
Lsp1109I	GCAGC	3 cut(s)	150, 303, 351
LweI	GCATC	3 cut(s)	337, 430, 628
MaeI	CTAG	3 cut(s)	450, 789, 941
MalI	GATC	2 cut(s)	828, 967
MboI	GATC	2 cut(s)	826, 965
MfeI	CAATTG	1 cut(s)	402
MhlI	GDGCHC	2 cut(s)	545, 882
MluCI	AATT	5 cut(s)	66, 402, 604, 719, 852
MlyI	GAGTC	2 cut(s)	526, 575
MmeI	TCCRAC	1 cut(s)	572
MroXI	GAANNNNTTC	1 cut(s)	181
MseI	TTAA	2 cut(s)	722, 816
MslI	CAYNNNNRTG	1 cut(s)	575
MunI	CAATTG	1 cut(s)	402
Mva1269I	GAATGC	1 cut(s)	959
MwoI	GCNNNNNNNGC	5 cut(s)	68, 289, 361, 465, 794
NdeI	CATATG	1 cut(s)	288
NdeII	GATC	2 cut(s)	826, 965
NlaIII	CATG	3 cut(s)	166, 205, 599
NspI	RCATGY	1 cut(s)	166
OliI	CACNNNNGTG	1 cut(s)	575
PciI	ACATGT	1 cut(s)	162
PctI	GAATGC	1 cut(s)	959
PdmI	GAANNNNTTC	1 cut(s)	181
PfeI	GAWTC	4 cut(s)	240, 431, 600, 626
PkrI	GCNGC	3 cut(s)	140, 318, 366
PleI	GAGTC	2 cut(s)	526, 575
PpsI	GAGTC	2 cut(s)	526, 575
PscI	ACATGT	1 cut(s)	162
Psp124BI	GAGCTC	1 cut(s)	882
PspPI	GGNCC	2 cut(s)	380, 761
RsaI	GTAC	1 cut(s)	933
RsaNI	GTAC	1 cut(s)	932
RseI	CAYNNNNRTG	1 cut(s)	575
SacI	GAGCTC	1 cut(s)	882
SaqAI	TTAA	2 cut(s)	722, 816
SatI	GCNGC	3 cut(s)	139, 317, 365
Sau3AI	GATC	2 cut(s)	826, 965
Sau96I	GGNCC	2 cut(s)	380, 761
SchI	GAGTC	2 cut(s)	526, 575
SduI	GDGCHC	2 cut(s)	545, 882
SfaNI	GCATC	3 cut(s)	337, 430, 628
SfcI	CTRYAG	1 cut(s)	133
SinI	GGWCC	1 cut(s)	761
SmiMI	CAYNNNNRTG	1 cut(s)	575
SpeI	ACTAGT	1 cut(s)	940
Sse9I	AATT	5 cut(s)	66, 402, 604, 719, 852
SspMI	CTAG	3 cut(s)	450, 789, 941
SstI	GAGCTC	1 cut(s)	882
TaaI	ACNGT	1 cut(s)	514
TasI	AATT	5 cut(s)	66, 402, 604, 719, 852
TfiI	GAWTC	4 cut(s)	240, 431, 600, 626
Tru1I	TTAA	2 cut(s)	722, 816
Tru9I	TTAA	2 cut(s)	722, 816
TscAI	CASTG	1 cut(s)	519
TseI	GCWGC	3 cut(s)	138, 316, 364
TspDTI	ATGAA	5 cut(s)	17, 222, 275, 354, 884
TspRI	CASTG	1 cut(s)	519
VpaK11BI	GGWCC	1 cut(s)	761
XceI	RCATGY	1 cut(s)	166
XmnI	GAANNNNTTC	1 cut(s)	181
XspI	CTAG	3 cut(s)	450, 789, 941

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.