Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr1

Orthogroup ID

OG0012451

Physical Location & Seq

Genomic Coordinates Reverse (-)

16873718 .. 16877329

Gene Structure 3612 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom01g17690.6

Sequence Viewer

CDS Protein Promoter (2k)

Length: 870 bp

ATGGGCGATCAGTTAGCTAGGGCGGAGGAATTCGAGAAGAAAGCAGAGAAGAAACTGAACAGCTGGGGATTTTTCGGGTCCAAACATGAAGACGCCGCCGAACTCTTCGACAAATCTGCCAATTCCTACAAGCTTGCCAAATCCTGGGACAAAGCTGGAGCAACATATGTCAAGTTGGCCAACTGTCATTTGAAGAGTGAAAGCAAACATGAAGCCGCCACAGCTTATGTTGATGCTGCACATTGCTACAAGAAAACAAATGTTAATGAGGCCATTTCTTGCTTAGAGCAGGCGGTAAATATGCTGTGTGATATTGGAAGGCTTAATATGGCTGCAAGATACTATAAGGAAATTGCTGAACTATATGAATCTGAACAAGATATTAAGAAGGCTATGGAGTTCTTTGAAAGGGCAGCTGATTTCTTCCAAAATGAAGAAGTAACAACATCGGCCAACCAGTGCAAGCAGAAAGTTGCTCAGTTTGCTGCACAGATTGAACAGTACCCCAAGTCTATTGAAATTTATGAAGAAATTGCACGGCACTCACTCAACAACAACTTGCTTAAGTATGGAGTTAAGGGGCATCTTCTTAATGCTGGAATCTGCCAACTTTGCAAAGGAGATGTCGTTGCAATCACCAATGCATTAGAGCGATATCAGGAATTAGATCCTACTTTTTCAGGAACAAGGGAATACAGGTTCTTAGCGGATATTGCCGCTTCAATTGATGAGGAAGACATTGCGAAGTTCACTGACGTGGTCAAGGAATTTGATAGTATGACCCCACTGGATTCATGGAAGACAACCTTGCTGCTGAGAGTGAAGGAAAAGCTGAAGTCCAAGGAACTCGAGGAGGACGATCTTACCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000149 GO:0003674 GO:0005483 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005886 GO:0005911 GO:0006810 GO:0006886 GO:0008104 GO:0008150 GO:0009506 GO:0009987 GO:0015031 GO:0015833 GO:0016020 GO:0016043 GO:0016192 GO:0019905 GO:0022411 GO:0030054 GO:0031090 GO:0031201 GO:0032984 GO:0032991 GO:0033036 GO:0034613 GO:0035494 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043624 GO:0043933 GO:0044422 GO:0044424 GO:0044425 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0045184 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0055044 GO:0061024 GO:0061025 GO:0070727 GO:0071702 GO:0071705 GO:0071840 GO:0071944 GO:0098588 GO:0098796 GO:0098805

KEGG Pathways

Metabolic & Signaling

ko04138 ko04721 map04138 map04721

Pfam Domains

Protein Families

SNAP

Protein Analysis

290

Amino Acids

32.86

Weight (kDa)

5.21

Isoelectric Point (pI)

26.4

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012451)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G56190 AT3G56190
fragaria_vesca	FvH4_7g25480
malus_domestica	MD01G1161100.v1.1 MD07G1229100.v1.1
prunus_persica	Prupe.2G259200_v2.0.a1 Prupe.2G259200_v2.0.a1
pyrus_communis	pycom01g17690 pycom07g20730
rosa_chinensis	RchiOBHm_Chr1g0371441
rosa_laevigata	RLG00000026961
rosa_multiflora	Rmu_sc0000809.1_g000022
rosa_roxburghii	Rroxscaffold_4G00285680
rosa_rugosa	Rorug01G0364000
rosa_samantha	Rh1AG374200 Rh1BG337600 Rh1CG350900 Rh1DG368600
rosa_wichuraiana	Rw1G032910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	144
AciI	CCGC	6 cut(s)	23, 96, 216, 293, 707, 717
AclWI	GGATC	1 cut(s)	662
AcoI	YGGCCR	2 cut(s)	177, 450
AcsI	RAATTY	3 cut(s)	29, 519, 767
AcuI	CTGAAG	1 cut(s)	854
AcyI	GRCGYC	1 cut(s)	93
AfaI	GTAC	1 cut(s)	503
AfiI	CCNNNNNNNGG	1 cut(s)	144
AflII	CTTAAG	1 cut(s)	563
AgsI	TTSAA	5 cut(s)	193, 407, 497, 518, 723
AjiI	CACGTC	1 cut(s)	757
AjnI	CCWGG	1 cut(s)	143
AleI	CACNNNNGTG	1 cut(s)	755
AloI	GAACNNNNNNTCC	2 cut(s)	683, 715
AluBI	AGCT	7 cut(s)	17, 63, 133, 155, 224, 416, 832
AluI	AGCT	7 cut(s)	17, 63, 133, 155, 224, 416, 832
AlwI	GGATC	1 cut(s)	662
Ama87I	CYCGRG	1 cut(s)	848
AoxI	GGCC	3 cut(s)	177, 270, 450
ApeKI	GCWGC	5 cut(s)	236, 332, 413, 485, 811
ApoI	RAATTY	3 cut(s)	29, 519, 767
ArsI	GACNNNNNNTTYG	2 cut(s)	609, 641
AspS9I	GGNCC	1 cut(s)	78
AsuHPI	GGTGA	1 cut(s)	628
AvaI	CYCGRG	1 cut(s)	848
AvaII	GGWCC	1 cut(s)	78
BalI	TGGCCA	1 cut(s)	179
BbsI	GAAGAC	3 cut(s)	96, 741, 806
BbvI	GCAGC	5 cut(s)	223, 319, 425, 472, 798
BceAI	ACGGC	1 cut(s)	554
BcgI	CGANNNNNNTGC	2 cut(s)	98, 132
BciT130I	CCWGG	1 cut(s)	145
BfaI	CTAG	1 cut(s)	18
BfrI	CTTAAG	1 cut(s)	563
BisI	GCNGC	8 cut(s)	96, 216, 237, 333, 414, 486, 717, 812
BlsI	GCNGC	8 cut(s)	97, 217, 238, 334, 415, 487, 718, 813
Bme1390I	CCNGG	1 cut(s)	145
Bme18I	GGWCC	1 cut(s)	78
BmeT110I	CYCGRG	1 cut(s)	848
BmgBI	CACGTC	1 cut(s)	757
BmgT120I	GGNCC	1 cut(s)	78
BmiI	GGNNCC	1 cut(s)	79
BmrFI	CCNGG	1 cut(s)	145
BmsI	GCATC	2 cut(s)	223, 592
BpiI	GAAGAC	3 cut(s)	96, 741, 806
BpmI	CTGGAG	1 cut(s)	177
BsaHI	GRCGYC	1 cut(s)	93
BsaJI	CCNNGG	2 cut(s)	144, 840
BsaXI	ACNNNNNCTCC	2 cut(s)	612, 642
Bsc4I	CCNNNNNNNGG	1 cut(s)	144
Bse1I	ACTGG	2 cut(s)	457, 792
Bse3DI	GCAATG	2 cut(s)	241, 738
BseBI	CCWGG	1 cut(s)	145
BseDI	CCNNGG	2 cut(s)	144, 840
BseLI	CCNNNNNNNGG	1 cut(s)	144
BseMI	GCAATG	2 cut(s)	241, 738
BseMII	CTCAG	2 cut(s)	491, 806
BseNI	ACTGG	2 cut(s)	457, 792
BseRI	GAGGAG	1 cut(s)	866
BseXI	GCAGC	5 cut(s)	223, 319, 425, 472, 798
BseYI	CCCAGC	1 cut(s)	63
BsgI	GTGCAG	2 cut(s)	222, 471
BshFI	GGCC	3 cut(s)	179, 272, 452
BsiHKCI	CYCGRG	1 cut(s)	848
BslFI	GGGAC	1 cut(s)	161
BslI	CCNNNNNNNGG	1 cut(s)	144
BsmFI	GGGAC	1 cut(s)	161
BsnI	GGCC	3 cut(s)	179, 272, 452
BsoBI	CYCGRG	1 cut(s)	848
Bsp143I	GATC	3 cut(s)	7, 667, 859
BspACI	CCGC	6 cut(s)	23, 96, 216, 293, 707, 717
BspANI	GGCC	3 cut(s)	179, 272, 452
BspCNI	CTCAG	2 cut(s)	490, 807
BspLI	GGNNCC	1 cut(s)	79
BspPI	GGATC	1 cut(s)	662
BspTI	CTTAAG	1 cut(s)	563
BsrDI	GCAATG	2 cut(s)	241, 738
BsrI	ACTGG	2 cut(s)	457, 792
BssECI	CCNNGG	2 cut(s)	144, 840
BssMI	GATC	3 cut(s)	7, 667, 859
BssNI	GRCGYC	1 cut(s)	93
BssT1I	CCWWGG	1 cut(s)	840
Bst2UI	CCWGG	1 cut(s)	145
Bst4CI	ACNGT	2 cut(s)	185, 501
Bst6I	CTCTTC	2 cut(s)	110, 188
BstACI	GRCGYC	1 cut(s)	93
BstAFI	CTTAAG	1 cut(s)	563
BstC8I	GCNNGC	3 cut(s)	135, 291, 464
BstDEI	CTNAG	4 cut(s)	283, 477, 703, 815
BstKTI	GATC	3 cut(s)	10, 670, 862
BstMBI	GATC	3 cut(s)	7, 667, 859
BstMWI	GCNNNNNNNGC	4 cut(s)	221, 482, 612, 713
BstNI	CCWGG	1 cut(s)	145
BstSCI	CCNGG	1 cut(s)	143
BstV1I	GCAGC	5 cut(s)	223, 319, 425, 472, 798
BstV2I	GAAGAC	3 cut(s)	96, 741, 806
BstX2I	RGATCY	1 cut(s)	667
BstYI	RGATCY	1 cut(s)	667
BsuRI	GGCC	3 cut(s)	179, 272, 452
BtrI	CACGTC	1 cut(s)	757
BtsIMutI	CAGTG	3 cut(s)	464, 750, 785
Cac8I	GCNNGC	3 cut(s)	135, 291, 464
Cfr13I	GGNCC	1 cut(s)	78
CseI	GACGC	1 cut(s)	101
Csp6I	GTAC	1 cut(s)	502
CviAII	CATG	3 cut(s)	86, 209, 795
CviQI	GTAC	1 cut(s)	502
DdeI	CTNAG	4 cut(s)	283, 477, 703, 815
DpnI	GATC	3 cut(s)	9, 669, 861
DpnII	GATC	3 cut(s)	7, 667, 859
EaeI	YGGCCR	2 cut(s)	177, 450
Eam1104I	CTCTTC	2 cut(s)	110, 188
EarI	CTCTTC	2 cut(s)	110, 188
EciI	GGCGGA	1 cut(s)	38
Eco130I	CCWWGG	1 cut(s)	840
Eco32I	GATATC	1 cut(s)	656
Eco47I	GGWCC	1 cut(s)	78
Eco57I	CTGAAG	1 cut(s)	854
Eco88I	CYCGRG	1 cut(s)	848
EcoRI	GAATTC	1 cut(s)	29
EcoRII	CCWGG	1 cut(s)	143
EcoRV	GATATC	1 cut(s)	656
EcoT14I	CCWWGG	1 cut(s)	840
EcoT22I	ATGCAT	1 cut(s)	646
ErhI	CCWWGG	1 cut(s)	840
FaeI	CATG	3 cut(s)	89, 212, 798
FalI	AAGNNNNNCTT	2 cut(s)	791, 823
FaqI	GGGAC	1 cut(s)	161
FatI	CATG	3 cut(s)	85, 208, 794
FauNDI	CATATG	1 cut(s)	166
Fnu4HI	GCNGC	8 cut(s)	96, 216, 237, 333, 414, 486, 717, 812
Fsp4HI	GCNGC	8 cut(s)	96, 216, 237, 333, 414, 486, 717, 812
FspBI	CTAG	1 cut(s)	18
GluI	GCNGC	8 cut(s)	96, 216, 237, 333, 414, 486, 717, 812
GsaI	CCCAGC	1 cut(s)	67
GsuI	CTGGAG	1 cut(s)	177
HaeIII	GGCC	3 cut(s)	179, 272, 452
HgaI	GACGC	1 cut(s)	101
Hin1I	GRCGYC	1 cut(s)	93
Hin1II	CATG	3 cut(s)	89, 212, 798
HindIII	AAGCTT	1 cut(s)	131
HinfI	GANTC	3 cut(s)	368, 600, 791
HphI	GGTGA	1 cut(s)	628
Hpy166II	GTNNAC	1 cut(s)	750
Hpy188I	TCNGA	1 cut(s)	373
Hpy188III	TCNNGA	3 cut(s)	34, 659, 681
Hpy8I	GTNNAC	1 cut(s)	750
HpyAV	CCTTC	3 cut(s)	312, 382, 817
HpyCH4III	ACNGT	2 cut(s)	185, 501
HpyCH4IV	ACGT	1 cut(s)	756
HpyCH4V	TGCA	8 cut(s)	239, 335, 462, 488, 536, 615, 632, 644
HpyF10VI	GCNNNNNNNGC	4 cut(s)	221, 482, 612, 713
HpyF3I	CTNAG	4 cut(s)	283, 477, 703, 815
HpySE526I	ACGT	1 cut(s)	756
Hsp92I	GRCGYC	1 cut(s)	93
Hsp92II	CATG	3 cut(s)	89, 212, 798
Kzo9I	GATC	3 cut(s)	7, 667, 859
LmnI	GCTCC	1 cut(s)	158
Lsp1109I	GCAGC	5 cut(s)	223, 319, 425, 472, 798
LweI	GCATC	2 cut(s)	223, 592
MaeI	CTAG	1 cut(s)	18
MaeII	ACGT	1 cut(s)	756
MaeIII	GTNAC	1 cut(s)	439
MalI	GATC	3 cut(s)	9, 669, 861
MboI	GATC	3 cut(s)	7, 667, 859
MfeI	CAATTG	1 cut(s)	723
MflI	RGATCY	1 cut(s)	667
MlsI	TGGCCA	1 cut(s)	179
MluCI	AATT	8 cut(s)	29, 121, 351, 519, 531, 662, 723, 767
MluNI	TGGCCA	1 cut(s)	179
MnlI	CCTC	5 cut(s)	19, 262, 724, 844, 847
Mox20I	TGGCCA	1 cut(s)	179
Mph1103I	ATGCAT	1 cut(s)	646
MscI	TGGCCA	1 cut(s)	179
MseI	TTAA	6 cut(s)	264, 324, 384, 564, 576, 591
MslI	CAYNNNNRTG	1 cut(s)	755
Msp20I	TGGCCA	1 cut(s)	179
MspA1I	CMGCKG	2 cut(s)	63, 416
MspCI	CTTAAG	1 cut(s)	563
MspR9I	CCNGG	1 cut(s)	145
MunI	CAATTG	1 cut(s)	723
MvaI	CCWGG	1 cut(s)	145
MwoI	GCNNNNNNNGC	4 cut(s)	221, 482, 612, 713
NdeI	CATATG	1 cut(s)	166
NdeII	GATC	3 cut(s)	7, 667, 859
NlaIII	CATG	3 cut(s)	89, 212, 798
NlaIV	GGNNCC	1 cut(s)	79
NsiI	ATGCAT	1 cut(s)	646
OliI	CACNNNNGTG	1 cut(s)	755
PaeR7I	CTCGAG	1 cut(s)	848
PcsI	WCGNNNNNNNCGW	1 cut(s)	855
PfeI	GAWTC	3 cut(s)	368, 600, 791
PflFI	GACNNNGTC	1 cut(s)	758
PflMI	CCANNNNNTGG	1 cut(s)	144
PkrI	GCNGC	8 cut(s)	97, 217, 238, 334, 415, 487, 718, 813
Psp6I	CCWGG	1 cut(s)	143
PspFI	CCCAGC	1 cut(s)	63
PspGI	CCWGG	1 cut(s)	143
PspN4I	GGNNCC	1 cut(s)	79
PspPI	GGNCC	1 cut(s)	78
PspXI	VCTCGAGB	1 cut(s)	848
PsuI	RGATCY	1 cut(s)	667
PsyI	GACNNNGTC	1 cut(s)	758
PvuII	CAGCTG	2 cut(s)	63, 416
RsaI	GTAC	1 cut(s)	503
RsaNI	GTAC	1 cut(s)	502
RseI	CAYNNNNRTG	1 cut(s)	755
SaqAI	TTAA	6 cut(s)	264, 324, 384, 564, 576, 591
SatI	GCNGC	8 cut(s)	96, 216, 237, 333, 414, 486, 717, 812
Sau3AI	GATC	3 cut(s)	7, 667, 859
Sau96I	GGNCC	1 cut(s)	78
ScrFI	CCNGG	1 cut(s)	145
SfaNI	GCATC	2 cut(s)	223, 592
Sfr274I	CTCGAG	1 cut(s)	848
SinI	GGWCC	1 cut(s)	78
SlaI	CTCGAG	1 cut(s)	848
SmiMI	CAYNNNNRTG	1 cut(s)	755
SmlI	CTYRAG	2 cut(s)	563, 848
SmoI	CTYRAG	2 cut(s)	563, 848
Sse9I	AATT	8 cut(s)	29, 121, 351, 519, 531, 662, 723, 767
SsiI	CCGC	6 cut(s)	23, 96, 216, 293, 707, 717
SspMI	CTAG	1 cut(s)	18
StyD4I	CCNGG	1 cut(s)	143
StyI	CCWWGG	1 cut(s)	840
TaaI	ACNGT	2 cut(s)	185, 501
TaiI	ACGT	1 cut(s)	759
TaqI	TCGA	3 cut(s)	33, 108, 849
TasI	AATT	8 cut(s)	29, 121, 351, 519, 531, 662, 723, 767
TauI	GCSGC	3 cut(s)	98, 218, 719
TfiI	GAWTC	3 cut(s)	368, 600, 791
Tru1I	TTAA	6 cut(s)	264, 324, 384, 564, 576, 591
Tru9I	TTAA	6 cut(s)	264, 324, 384, 564, 576, 591
TscAI	CASTG	3 cut(s)	464, 757, 792
TseI	GCWGC	5 cut(s)	236, 332, 413, 485, 811
TspDTI	ATGAA	6 cut(s)	102, 225, 381, 447, 540, 783
TspRI	CASTG	3 cut(s)	464, 757, 792
Tth111I	GACNNNGTC	1 cut(s)	758
Van91I	CCANNNNNTGG	1 cut(s)	144
Vha464I	CTTAAG	1 cut(s)	563
VpaK11BI	GGWCC	1 cut(s)	78
XapI	RAATTY	3 cut(s)	29, 519, 767
XcmI	CCANNNNNNNNNTGG	1 cut(s)	792
XhoI	CTCGAG	1 cut(s)	848
XspI	CTAG	1 cut(s)	18
Zsp2I	ATGCAT	1 cut(s)	646

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.