Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1D

Orthogroup ID

OG0012451

Physical Location & Seq

Genomic Coordinates Reverse (-)

59385222 .. 59389784

Gene Structure 4563 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1DG368600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 675 bp

ATGGGAGATCAGATAGCTAGGGCTGAAGATTTCGAACGCAAAGCGGAGAAGAAGCTCGGCGGTTGGGGCCTCTTCAGCTCCAAATACGAAGACGCCGCTGAACTCTTCGATAAAGCTGCCAATTCCTACAAGCTCGCCAAATCCTGGGACAAAGCTGGAGCAACATATGTCAAGTTGGCAAACTGTCATTTAAAGACTGAGAGCAAACATGAAGCCGCCACAGCTTATGTTGATGCTGCACATTGCTACAAGAAAACATCTGTAAATGAGTCCATTTCTTGCTTAGAGCAGGGTGTAAATTTGTTTTGCGATATTGGAAGGCTTAATATGGCTGCAAGATACTATAAGGAAATTGCCGAGTTATATGAATCTGAACAAAACATTGAGAAGGCTATTGACTTCTATGAAAGAGCTGCTGATTTTTTCCAAAATGAAGAAGTAACAACTTCTGCCAACCAGTGCAAGCAGAAAGTTGCTCAATTTGCTGCTCAGATTGAACAATATCCCAAGTCTATTCAAATTTATGAGGAAATTGCACGGCACTCGCTCAACAACAACTTGCTGAAGTATGGGGTCAAAGGACATCTTCTTAATGCTGGGATATGCCAACTCTGCAAAGGAGATCCTGTTGCAATCAGCAATGCATTAGAGAAATACGAGGTTTTAAGTTTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000149 GO:0003674 GO:0005483 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005886 GO:0005911 GO:0006810 GO:0006886 GO:0008104 GO:0008150 GO:0009506 GO:0009987 GO:0015031 GO:0015833 GO:0016020 GO:0016043 GO:0016192 GO:0019905 GO:0022411 GO:0030054 GO:0031090 GO:0031201 GO:0032984 GO:0032991 GO:0033036 GO:0034613 GO:0035494 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043624 GO:0043933 GO:0044422 GO:0044424 GO:0044425 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0045184 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0055044 GO:0061024 GO:0061025 GO:0070727 GO:0071702 GO:0071705 GO:0071840 GO:0071944 GO:0098588 GO:0098796 GO:0098805

KEGG Pathways

Metabolic & Signaling

ko04138 ko04721 map04138 map04721

Pfam Domains

Protein Families

SNAP

Protein Analysis

224

Amino Acids

25.18

Weight (kDa)

5.81

Isoelectric Point (pI)

29.8

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SNAP	PF14938	7 - 221	3.3e-83	Soluble NSF attachment protein, SNAP
HEAT_Nup120	PF23300	51 - 188	9.5e-07	Nucleoporin Nup120, HEAT repeats

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012451)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G56190 AT3G56190
fragaria_vesca	FvH4_7g25480
malus_domestica	MD01G1161100.v1.1 MD07G1229100.v1.1
prunus_persica	Prupe.2G259200_v2.0.a1 Prupe.2G259200_v2.0.a1
pyrus_communis	pycom01g17690 pycom07g20730
rosa_chinensis	RchiOBHm_Chr1g0371441
rosa_laevigata	RLG00000026961
rosa_multiflora	Rmu_sc0000809.1_g000022
rosa_roxburghii	Rroxscaffold_4G00285680
rosa_rugosa	Rorug01G0364000
rosa_samantha	Rh1AG374200 Rh1BG337600 Rh1CG350900 Rh1DG368600
rosa_wichuraiana	Rw1G032910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	144
AciI	CCGC	4 cut(s)	44, 60, 96, 216
AclWI	GGATC	1 cut(s)	617
AcsI	RAATTY	2 cut(s)	298, 519
AcuI	CTGAAG	3 cut(s)	45, 58, 584
AcyI	GRCGYC	1 cut(s)	93
AfiI	CCNNNNNNNGG	1 cut(s)	144
AgsI	TTSAA	2 cut(s)	497, 518
AjnI	CCWGG	1 cut(s)	143
AluBI	AGCT	8 cut(s)	17, 55, 78, 116, 133, 155, 224, 413
AluI	AGCT	8 cut(s)	17, 55, 78, 116, 133, 155, 224, 413
AlwI	GGATC	1 cut(s)	617
AoxI	GGCC	1 cut(s)	67
ApeKI	GCWGC	5 cut(s)	116, 236, 332, 413, 485
ApoI	RAATTY	2 cut(s)	298, 519
AspS9I	GGNCC	1 cut(s)	67
AsuII	TTCGAA	1 cut(s)	33
BbsI	GAAGAC	1 cut(s)	96
BbvI	GCAGC	5 cut(s)	103, 223, 319, 400, 472
BceAI	ACGGC	1 cut(s)	554
BcgI	CGANNNNNNTGC	4 cut(s)	98, 132, 525, 559
BciT130I	CCWGG	1 cut(s)	145
BfaI	CTAG	1 cut(s)	18
BisI	GCNGC	7 cut(s)	96, 117, 216, 237, 333, 414, 486
BlsI	GCNGC	7 cut(s)	97, 118, 217, 238, 334, 415, 487
Bme1390I	CCNGG	1 cut(s)	145
BmgT120I	GGNCC	1 cut(s)	67
BmiI	GGNNCC	1 cut(s)	68
BmrFI	CCNGG	1 cut(s)	145
BmsI	GCATC	1 cut(s)	223
BpiI	GAAGAC	1 cut(s)	96
BpmI	CTGGAG	1 cut(s)	177
Bpu14I	TTCGAA	1 cut(s)	33
BsaHI	GRCGYC	1 cut(s)	93
BsaJI	CCNNGG	1 cut(s)	144
BsaXI	ACNNNNNCTCC	2 cut(s)	612, 642
Bsc4I	CCNNNNNNNGG	1 cut(s)	144
Bse1I	ACTGG	1 cut(s)	457
Bse3DI	GCAATG	2 cut(s)	241, 646
BseBI	CCWGG	1 cut(s)	145
BseDI	CCNNGG	1 cut(s)	144
BseLI	CCNNNNNNNGG	1 cut(s)	144
BseMI	GCAATG	2 cut(s)	241, 646
BseMII	CTCAG	2 cut(s)	189, 503
BseNI	ACTGG	1 cut(s)	457
BseXI	GCAGC	5 cut(s)	103, 223, 319, 400, 472
BseYI	CCCAGC	1 cut(s)	596
BsgI	GTGCAG	1 cut(s)	222
BshFI	GGCC	1 cut(s)	69
BslFI	GGGAC	1 cut(s)	161
BslI	CCNNNNNNNGG	1 cut(s)	144
BsmFI	GGGAC	1 cut(s)	161
BsnI	GGCC	1 cut(s)	69
Bsp119I	TTCGAA	1 cut(s)	33
Bsp143I	GATC	2 cut(s)	7, 622
BspACI	CCGC	4 cut(s)	44, 60, 96, 216
BspANI	GGCC	1 cut(s)	69
BspCNI	CTCAG	2 cut(s)	190, 502
BspLI	GGNNCC	1 cut(s)	68
BspPI	GGATC	1 cut(s)	617
BspT104I	TTCGAA	1 cut(s)	33
BsrDI	GCAATG	2 cut(s)	241, 646
BsrI	ACTGG	1 cut(s)	457
BssECI	CCNNGG	1 cut(s)	144
BssMI	GATC	2 cut(s)	7, 622
BssNI	GRCGYC	1 cut(s)	93
Bst2UI	CCWGG	1 cut(s)	145
Bst4CI	ACNGT	1 cut(s)	185
Bst6I	CTCTTC	2 cut(s)	77, 110
BstACI	GRCGYC	1 cut(s)	93
BstBI	TTCGAA	1 cut(s)	33
BstC8I	GCNNGC	2 cut(s)	135, 464
BstDEI	CTNAG	3 cut(s)	198, 283, 489
BstKTI	GATC	2 cut(s)	10, 625
BstMBI	GATC	2 cut(s)	7, 622
BstMWI	GCNNNNNNNGC	5 cut(s)	66, 75, 221, 482, 612
BstNI	CCWGG	1 cut(s)	145
BstSCI	CCNGG	1 cut(s)	143
BstV1I	GCAGC	5 cut(s)	103, 223, 319, 400, 472
BstV2I	GAAGAC	1 cut(s)	96
BstX2I	RGATCY	1 cut(s)	622
BstYI	RGATCY	1 cut(s)	622
BsuRI	GGCC	1 cut(s)	69
BtsIMutI	CAGTG	1 cut(s)	464
Cac8I	GCNNGC	2 cut(s)	135, 464
Cfr13I	GGNCC	1 cut(s)	67
CseI	GACGC	1 cut(s)	101
CviAII	CATG	1 cut(s)	209
DdeI	CTNAG	3 cut(s)	198, 283, 489
DpnI	GATC	2 cut(s)	9, 624
DpnII	GATC	2 cut(s)	7, 622
DraI	TTTAAA	1 cut(s)	192
Eam1104I	CTCTTC	2 cut(s)	77, 110
EarI	CTCTTC	2 cut(s)	77, 110
Eco57I	CTGAAG	3 cut(s)	45, 58, 584
EcoO109I	RGGNCCY	1 cut(s)	67
EcoRII	CCWGG	1 cut(s)	143
EcoT22I	ATGCAT	1 cut(s)	646
FaeI	CATG	1 cut(s)	212
FalI	AAGNNNNNCTT	2 cut(s)	570, 602
FaqI	GGGAC	1 cut(s)	161
FatI	CATG	1 cut(s)	208
FauNDI	CATATG	1 cut(s)	166
Fnu4HI	GCNGC	7 cut(s)	96, 117, 216, 237, 333, 414, 486
Fsp4HI	GCNGC	7 cut(s)	96, 117, 216, 237, 333, 414, 486
FspBI	CTAG	1 cut(s)	18
GluI	GCNGC	7 cut(s)	96, 117, 216, 237, 333, 414, 486
GsaI	CCCAGC	1 cut(s)	600
GsuI	CTGGAG	1 cut(s)	177
HaeIII	GGCC	1 cut(s)	69
HgaI	GACGC	1 cut(s)	101
Hin1I	GRCGYC	1 cut(s)	93
Hin1II	CATG	1 cut(s)	212
HinfI	GANTC	2 cut(s)	269, 368
Hpy188I	TCNGA	3 cut(s)	12, 373, 492
HpyAV	CCTTC	2 cut(s)	312, 382
HpyCH4III	ACNGT	1 cut(s)	185
HpyCH4V	TGCA	7 cut(s)	239, 335, 462, 536, 615, 632, 644
HpyF10VI	GCNNNNNNNGC	5 cut(s)	66, 75, 221, 482, 612
HpyF3I	CTNAG	3 cut(s)	198, 283, 489
Hsp92I	GRCGYC	1 cut(s)	93
Hsp92II	CATG	1 cut(s)	212
Kzo9I	GATC	2 cut(s)	7, 622
LmnI	GCTCC	2 cut(s)	83, 158
LpnPI	CCDG	7 cut(s)	130, 141, 157, 275, 470, 582, 639
Lsp1109I	GCAGC	5 cut(s)	103, 223, 319, 400, 472
LweI	GCATC	1 cut(s)	223
MaeI	CTAG	1 cut(s)	18
MaeIII	GTNAC	1 cut(s)	439
MalI	GATC	2 cut(s)	9, 624
MboI	GATC	2 cut(s)	7, 622
MboII	GAAGA	7 cut(s)	38, 61, 64, 97, 101, 446, 578
MflI	RGATCY	1 cut(s)	622
MluCI	AATT	6 cut(s)	121, 298, 351, 479, 519, 531
MlyI	GAGTC	1 cut(s)	278
MnlI	CCTC	3 cut(s)	80, 520, 652
Mph1103I	ATGCAT	1 cut(s)	646
MseI	TTAA	4 cut(s)	191, 324, 591, 665
MspA1I	CMGCKG	1 cut(s)	98
MspR9I	CCNGG	1 cut(s)	145
MvaI	CCWGG	1 cut(s)	145
MwoI	GCNNNNNNNGC	5 cut(s)	66, 75, 221, 482, 612
NdeI	CATATG	1 cut(s)	166
NdeII	GATC	2 cut(s)	7, 622
NlaIII	CATG	1 cut(s)	212
NlaIV	GGNNCC	1 cut(s)	68
NmeAIII	GCCGAG	2 cut(s)	36, 382
NsiI	ATGCAT	1 cut(s)	646
NspV	TTCGAA	1 cut(s)	33
PfeI	GAWTC	1 cut(s)	368
PflMI	CCANNNNNTGG	1 cut(s)	144
PkrI	GCNGC	7 cut(s)	97, 118, 217, 238, 334, 415, 487
PleI	GAGTC	1 cut(s)	277
PpsI	GAGTC	1 cut(s)	277
Psp6I	CCWGG	1 cut(s)	143
PspFI	CCCAGC	1 cut(s)	596
PspGI	CCWGG	1 cut(s)	143
PspN4I	GGNNCC	1 cut(s)	68
PspPI	GGNCC	1 cut(s)	67
PsuI	RGATCY	1 cut(s)	622
SaqAI	TTAA	4 cut(s)	191, 324, 591, 665
SatI	GCNGC	7 cut(s)	96, 117, 216, 237, 333, 414, 486
Sau3AI	GATC	2 cut(s)	7, 622
Sau96I	GGNCC	1 cut(s)	67
SchI	GAGTC	1 cut(s)	278
ScrFI	CCNGG	1 cut(s)	145
SetI	ASST	9 cut(s)	19, 57, 80, 118, 135, 157, 226, 415, 663
SfaNI	GCATC	1 cut(s)	223
SfuI	TTCGAA	1 cut(s)	33
Sse9I	AATT	6 cut(s)	121, 298, 351, 479, 519, 531
SsiI	CCGC	4 cut(s)	44, 60, 96, 216
SspMI	CTAG	1 cut(s)	18
StyD4I	CCNGG	1 cut(s)	143
TaaI	ACNGT	1 cut(s)	185
TaqI	TCGA	2 cut(s)	33, 108
TasI	AATT	6 cut(s)	121, 298, 351, 479, 519, 531
TauI	GCSGC	2 cut(s)	98, 218
TfiI	GAWTC	1 cut(s)	368
Tru1I	TTAA	4 cut(s)	191, 324, 591, 665
Tru9I	TTAA	4 cut(s)	191, 324, 591, 665
TscAI	CASTG	1 cut(s)	464
TseI	GCWGC	5 cut(s)	116, 236, 332, 413, 485
TspDTI	ATGAA	4 cut(s)	225, 381, 420, 447
TspRI	CASTG	1 cut(s)	464
Van91I	CCANNNNNTGG	1 cut(s)	144
XapI	RAATTY	2 cut(s)	298, 519
XspI	CTAG	1 cut(s)	18
Zsp2I	ATGCAT	1 cut(s)	646

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.