AT3G56360

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0015947
Physical Location & Seq
Forward (+)
20896332 .. 20897747
1416 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G56360.1

Sequence Viewer

Length: 702 bp
ATGGCGACGTCTGCGAGGATTTGTTGCGGAGGAGGAAGTGCATGCGCCGTTCGTTGTGATCGTCGCACGTTAAATTTGAATTCTCGATCGTCATGTGTTGTTCCAGTGACGAATCGACGGAATATGTGTGCGATCGGGAAGATTTCGATGTCGATGGAGGATTTGTCACCACCGTCTGCGGCGGTGAAGATTGAAAGGATCGGTGGAAGGAAACGCGGTGGATCTGTTGTGTCGAGGGAGAAGCTAGATGTGTGGTTGAGAGATTCGGTGGTTGAGATCGTGAAGAATCTTAGAGAGTCGCCGTTATTGATGCATTTATACGCGGAGGCTAATGGTGGTTTGACGACGACGGCAACGAATCCAAAGGCGGAGGATTGGACAGAGATGGAAGGAAAGTGGGGTAGAGGAGAAGAGAGGACGCCGGAAGGAGTTATATTGGTGGAGAAGCTCGCAGACGGTGACATAGCAGATGATGATGATCACGATGGTGGCGCGTGTGGGGAAGATACAAGCGCGTGGGGGATTGTGGCGCAAGGAAGAGGATCGGATACTGGGCCGGTTTGTTATCTATTGAAAACGACCCGGGTCCGGTCGGGTATGGGTACGGTTTGCACCCATTTCTGTTTGGTTAAGGTCAAGAGTTTTAGGGAAACGGCTATGTCACAGTTGAATAATTCGTGGTTGGTGCAGACTGGTCAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

233

Amino Acids

25.14

Weight (kDa)

7.5

Isoelectric Point (pI)

49.55

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF7804 PF25089 77 - 154 7.8e-28 Domain of unknown function (DUF7804)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015947)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G56360 AT5G05250
fragaria_vesca FvH4_7g25910
malus_domestica MD01G1167600.v1.1 MD07G1233600.v1.1
prunus_persica Prupe.2G264000_v2.0.a1
pyrus_communis pycom01g18060 pycom07g21140
rosa_chinensis RchiOBHm_Chr1g0372231
rosa_rugosa Rorug01G0370600
rosa_samantha Rh1AG378900 Rh1BG342400 Rh1CG356000 Rh1DG373600
rosa_wichuraiana Rw1G033340

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 11
AccII CGCG 4 cut(s) 216, 323, 494, 515
AciI CCGC 6 cut(s) 27, 179, 182, 216, 323, 368
AclWI GGATC 3 cut(s) 206, 229, 550
AcsI RAATTY 2 cut(s) 73, 79
AcyI GRCGYC 2 cut(s) 8, 419
AfaI GTAC 1 cut(s) 604
AfiI CCNNNNNNNGG 1 cut(s) 588
AgsI TTSAA 4 cut(s) 79, 194, 574, 670
AleI CACNNNNGTG 1 cut(s) 486
AluBI AGCT 2 cut(s) 244, 448
AluI AGCT 2 cut(s) 244, 448
AlwI GGATC 3 cut(s) 206, 229, 550
Ama87I CYCGRG 1 cut(s) 582
AoxI GGCC 1 cut(s) 554
ApoI RAATTY 2 cut(s) 73, 79
AspLEI GCGC 4 cut(s) 47, 494, 515, 532
AspS9I GGNCC 2 cut(s) 554, 586
AsuC2I CCSGG 2 cut(s) 583, 584
AsuHPI GGTGA 3 cut(s) 159, 196, 470
AvaI CYCGRG 1 cut(s) 582
AvaII GGWCC 1 cut(s) 586
BccI CCATC 3 cut(s) 148, 379, 479
BceAI ACGGC 4 cut(s) 32, 286, 366, 669
BciVI GTATCC 1 cut(s) 541
BclI TGATCA 1 cut(s) 478
BcnI CCSGG 2 cut(s) 583, 584
BfaI CTAG 1 cut(s) 245
BfuI GTATCC 1 cut(s) 541
BisI GCNGC 1 cut(s) 180
BlsI GCNGC 1 cut(s) 181
Bme1390I CCNGG 2 cut(s) 583, 584
Bme18I GGWCC 1 cut(s) 586
BmeT110I CYCGRG 1 cut(s) 582
BmgT120I GGNCC 2 cut(s) 554, 586
BmiI GGNNCC 1 cut(s) 587
BmrFI CCNGG 2 cut(s) 583, 584
BmrI ACTGGG 1 cut(s) 561
BmsI GCATC 1 cut(s) 300
BmuI ACTGGG 1 cut(s) 561
BoxI GACNNNNGTC 1 cut(s) 584
BpuMI CCSGG 2 cut(s) 583, 584
BsaBI GATNNNNATC 1 cut(s) 477
BsaHI GRCGYC 2 cut(s) 8, 419
BsaJI CCNNGG 1 cut(s) 582
BsaWI WCCGGW 1 cut(s) 588
BsaXI ACNNNNNCTCC 2 cut(s) 149, 179
Bsc4I CCNNNNNNNGG 1 cut(s) 588
Bse118I RCCGGY 1 cut(s) 556
Bse1I ACTGG 3 cut(s) 104, 556, 697
Bse8I GATNNNNATC 1 cut(s) 477
BseDI CCNNGG 1 cut(s) 582
BseJI GATNNNNATC 1 cut(s) 477
BseLI CCNNNNNNNGG 1 cut(s) 588
BseNI ACTGG 3 cut(s) 104, 556, 697
BseRI GAGGAG 2 cut(s) 45, 420
Bsh1236I CGCG 4 cut(s) 216, 323, 494, 515
Bsh1285I CGRYCG 3 cut(s) 89, 135, 593
BshFI GGCC 1 cut(s) 556
BsiEI CGRYCG 3 cut(s) 89, 135, 593
BsiHKCI CYCGRG 1 cut(s) 582
BsiSI CCGG 4 cut(s) 422, 557, 583, 589
BslI CCNNNNNNNGG 1 cut(s) 588
BsnI GGCC 1 cut(s) 556
BsoBI CYCGRG 1 cut(s) 582
Bsp143I GATC 8 cut(s) 58, 86, 132, 198, 221, 276, 478, 542
BspACI CCGC 6 cut(s) 27, 179, 182, 216, 323, 368
BspANI GGCC 1 cut(s) 556
BspFNI CGCG 4 cut(s) 216, 323, 494, 515
BspLI GGNNCC 1 cut(s) 587
BspPI GGATC 3 cut(s) 206, 229, 550
BsrFI RCCGGY 1 cut(s) 556
BsrI ACTGG 3 cut(s) 104, 556, 697
BssAI RCCGGY 1 cut(s) 556
BssECI CCNNGG 1 cut(s) 582
BssMI GATC 8 cut(s) 58, 86, 132, 198, 221, 276, 478, 542
BssNI GRCGYC 2 cut(s) 8, 419
Bst4CI ACNGT 4 cut(s) 174, 458, 607, 666
Bst6I CTCTTC 2 cut(s) 405, 532
BstACI GRCGYC 2 cut(s) 8, 419
BstC8I GCNNGC 2 cut(s) 43, 450
BstDEI CTNAG 1 cut(s) 290
BstFNI CGCG 4 cut(s) 216, 323, 494, 515
BstHHI GCGC 4 cut(s) 47, 494, 515, 532
BstKTI GATC 8 cut(s) 61, 89, 135, 201, 224, 279, 481, 545
BstMBI GATC 8 cut(s) 58, 86, 132, 198, 221, 276, 478, 542
BstMCI CGRYCG 3 cut(s) 89, 135, 593
BstMWI GCNNNNNNNGC 1 cut(s) 11
BstNSI RCATGY 1 cut(s) 45
BstPAI GACNNNNGTC 1 cut(s) 584
BstSCI CCNGG 2 cut(s) 581, 582
BstUI CGCG 4 cut(s) 216, 323, 494, 515
BstX2I RGATCY 1 cut(s) 221
BstYI RGATCY 1 cut(s) 221
BsuI GTATCC 1 cut(s) 541
BsuRI GGCC 1 cut(s) 556
BtsIMutI CAGTG 1 cut(s) 111
Cac8I GCNNGC 2 cut(s) 43, 450
CfoI GCGC 4 cut(s) 47, 494, 515, 532
Cfr10I RCCGGY 1 cut(s) 556
Cfr13I GGNCC 2 cut(s) 554, 586
Cfr9I CCCGGG 1 cut(s) 582
CseI GACGC 1 cut(s) 427
Csp6I GTAC 1 cut(s) 603
CviAII CATG 2 cut(s) 42, 93
CviJI RGCY 5 cut(s) 244, 329, 448, 556, 656
CviKI_1 RGCY 5 cut(s) 244, 329, 448, 556, 656
CviQI GTAC 1 cut(s) 603
DdeI CTNAG 1 cut(s) 290
DpnI GATC 8 cut(s) 60, 88, 134, 200, 223, 278, 480, 544
DpnII GATC 8 cut(s) 58, 86, 132, 198, 221, 276, 478, 542
Eam1104I CTCTTC 2 cut(s) 405, 532
EarI CTCTTC 2 cut(s) 405, 532
EciI GGCGGA 1 cut(s) 383
Eco47I GGWCC 1 cut(s) 586
Eco88I CYCGRG 1 cut(s) 582
EcoRI GAATTC 1 cut(s) 79
EcoT22I ATGCAT 1 cut(s) 315
FaeI CATG 2 cut(s) 45, 96
FaiI YATR 8 cut(s) 43, 94, 125, 319, 434, 464, 599, 659
FatI CATG 2 cut(s) 41, 92
FbaI TGATCA 1 cut(s) 478
Fnu4HI GCNGC 1 cut(s) 180
Fsp4HI GCNGC 1 cut(s) 180
FspBI CTAG 1 cut(s) 245
GlaI GCGC 4 cut(s) 46, 493, 514, 531
GluI GCNGC 1 cut(s) 180
HaeIII GGCC 1 cut(s) 556
HapII CCGG 4 cut(s) 422, 557, 583, 589
HgaI GACGC 1 cut(s) 427
HhaI GCGC 4 cut(s) 47, 494, 515, 532
Hin1I GRCGYC 2 cut(s) 8, 419
Hin1II CATG 2 cut(s) 45, 96
Hin6I GCGC 4 cut(s) 45, 492, 513, 530
HinP1I GCGC 4 cut(s) 45, 492, 513, 530
HinfI GANTC 5 cut(s) 112, 263, 286, 296, 358
HpaII CCGG 4 cut(s) 422, 557, 583, 589
HphI GGTGA 3 cut(s) 159, 196, 470
Hpy188I TCNGA 1 cut(s) 547
Hpy188III TCNNGA 5 cut(s) 84, 136, 280, 482, 637
Hpy99I CGWCG 5 cut(s) 10, 66, 120, 349, 352
HpyAV CCTTC 3 cut(s) 201, 383, 419
HpyCH4III ACNGT 4 cut(s) 174, 458, 607, 666
HpyCH4IV ACGT 2 cut(s) 8, 68
HpyCH4V TGCA 4 cut(s) 41, 313, 612, 688
HpyF10VI GCNNNNNNNGC 1 cut(s) 11
HpyF3I CTNAG 1 cut(s) 290
HpySE526I ACGT 2 cut(s) 8, 68
Hsp92I GRCGYC 2 cut(s) 8, 419
Hsp92II CATG 2 cut(s) 45, 96
HspAI GCGC 4 cut(s) 45, 492, 513, 530
Ksp22I TGATCA 1 cut(s) 478
Kzo9I GATC 8 cut(s) 58, 86, 132, 198, 221, 276, 478, 542
LpnPI CCDG 7 cut(s) 117, 435, 537, 570, 596, 602, 678
LweI GCATC 1 cut(s) 300
MaeI CTAG 1 cut(s) 245
MaeII ACGT 2 cut(s) 8, 68
MaeIII GTNAC 4 cut(s) 106, 165, 458, 660
MalI GATC 8 cut(s) 60, 88, 134, 200, 223, 278, 480, 544
MboI GATC 8 cut(s) 58, 86, 132, 198, 221, 276, 478, 542
MboII GAAGA 6 cut(s) 151, 199, 295, 422, 515, 549
MflI RGATCY 1 cut(s) 221
MluCI AATT 3 cut(s) 73, 79, 673
MlyI GAGTC 1 cut(s) 305
Mph1103I ATGCAT 1 cut(s) 315
MseI TTAA 2 cut(s) 71, 630
MslI CAYNNNNRTG 1 cut(s) 486
MspI CCGG 4 cut(s) 422, 557, 583, 589
MspR9I CCNGG 2 cut(s) 583, 584
MvnI CGCG 4 cut(s) 216, 323, 494, 515
MwoI GCNNNNNNNGC 1 cut(s) 11
NciI CCSGG 2 cut(s) 583, 584
NdeII GATC 8 cut(s) 58, 86, 132, 198, 221, 276, 478, 542
NlaIII CATG 2 cut(s) 45, 96
NlaIV GGNNCC 1 cut(s) 587
NmuCI GTSAC 4 cut(s) 106, 165, 458, 660
NsiI ATGCAT 1 cut(s) 315
NspI RCATGY 1 cut(s) 45
OliI CACNNNNGTG 1 cut(s) 486
PaeI GCATGC 1 cut(s) 45
PcsI WCGNNNNNNNCGW 2 cut(s) 58, 353
PfeI GAWTC 4 cut(s) 112, 263, 286, 358
PkrI GCNGC 1 cut(s) 181
Ple19I CGATCG 2 cut(s) 89, 135
PleI GAGTC 1 cut(s) 304
PpsI GAGTC 1 cut(s) 304
PshAI GACNNNNGTC 1 cut(s) 584
PspN4I GGNNCC 1 cut(s) 587
PspPI GGNCC 2 cut(s) 554, 586
PsuI RGATCY 1 cut(s) 221
PvuI CGATCG 2 cut(s) 89, 135
RsaI GTAC 1 cut(s) 604
RsaNI GTAC 1 cut(s) 603
RseI CAYNNNNRTG 1 cut(s) 486
SaqAI TTAA 2 cut(s) 71, 630
SatI GCNGC 1 cut(s) 180
Sau3AI GATC 8 cut(s) 58, 86, 132, 198, 221, 276, 478, 542
Sau96I GGNCC 2 cut(s) 554, 586
SchI GAGTC 1 cut(s) 305
ScrFI CCNGG 2 cut(s) 583, 584
SetI ASST 5 cut(s) 11, 71, 246, 450, 636
SfaNI GCATC 1 cut(s) 300
SinI GGWCC 1 cut(s) 586
SmaI CCCGGG 1 cut(s) 584
SmiMI CAYNNNNRTG 1 cut(s) 486
SphI GCATGC 1 cut(s) 45
Sse9I AATT 3 cut(s) 73, 79, 673
SsiI CCGC 6 cut(s) 27, 179, 182, 216, 323, 368
SspMI CTAG 1 cut(s) 245
StyD4I CCNGG 2 cut(s) 581, 582
TaaI ACNGT 4 cut(s) 174, 458, 607, 666
TaiI ACGT 2 cut(s) 11, 71
TaqI TCGA 5 cut(s) 85, 115, 146, 152, 233
TasI AATT 3 cut(s) 73, 79, 673
TauI GCSGC 1 cut(s) 182
TfiI GAWTC 4 cut(s) 112, 263, 286, 358
Tru1I TTAA 2 cut(s) 71, 630
Tru9I TTAA 2 cut(s) 71, 630
TscAI CASTG 1 cut(s) 111
TseFI GTSAC 4 cut(s) 106, 165, 458, 660
Tsp45I GTSAC 4 cut(s) 106, 165, 458, 660
TspGWI ACGGA 1 cut(s) 133
TspMI CCCGGG 1 cut(s) 582
TspRI CASTG 1 cut(s) 111
VpaK11BI GGWCC 1 cut(s) 586
XapI RAATTY 2 cut(s) 73, 79
XceI RCATGY 1 cut(s) 45
XmaI CCCGGG 1 cut(s) 582
XspI CTAG 1 cut(s) 245
ZraI GACGTC 1 cut(s) 9
Zsp2I ATGCAT 1 cut(s) 315
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.