MD07G1233600.v1.1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr07
OG0015947
Physical Location & Seq
Forward (+)
30730931 .. 30731656
726 bp
Loading structure...
UTR
Exon/CDS
Intron
MD07G1233600.v1.1.491

Sequence Viewer

Length: 726 bp
ATGGCATCGGTTGGAATCCAATTCGGAGGTAATAACAGCGCCGTTCTTGATCATCGCCGTCAGAGCAGTCTTTGCGTTTGCAGTCCTTATTCCAATCGGAGCGTGTCGATGATCCGTGGATCCGGGGGGAAAAGAGGAAATTCGGTAGTGGCGATGGCGCGGGCGGGATTGGAGGCGGTGGGGCGGGAGCGGAGGCGCGGAGGTGGAAACGGGAGCGAGGCTGCGGCGGCGGCGTATGATAAGTTGGATGAGTGGATGAGGGGGTCGGTGGTGGAGATCGTCCAGAATCTCCGGGAGGCGCCGCTGTTGGTCAATGTGTACGGGAGGAGTAGTACGGACGGTAGGCCGAGGCTGGAGACGGAGAAGCGGGTGGAGGAGGAGAATTGGGACGGGCTCAGACGTAAATGGGAGGCGGGAGCGGCGCCGTTTCCCGACGGCGTTATCTTCGTCGAAGAACTGAACGACAACGATAACGGTGGCGGTGAGTGTAACGGTAAAGATGACGGAGGGGATGCGATCACGAAAGCGTGGGGGTTAGTGGTGCAGGGGAAGGGGAATGAGAGTGGGCCCGCCTGTTACTTGTTGAAGACGAGTAAAGTCAATAACGGGTCGGGCTTCGGGCTCGGTATGGGCTTGGGCTGCACCCATTTCTGTTTGGTTCCGGTCAGCAGTTTCAGGGAGAAGGCCCAATCGCAGCTGAAGAATTGTTGGTTGTTGCAGGCCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

242

Amino Acids

25.74

Weight (kDa)

8.15

Isoelectric Point (pI)

50.93

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF7804 PF25089 78 - 158 3.2e-30 Domain of unknown function (DUF7804)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015947)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G56360 AT5G05250
fragaria_vesca FvH4_7g25910
malus_domestica MD01G1167600.v1.1 MD07G1233600.v1.1
prunus_persica Prupe.2G264000_v2.0.a1
pyrus_communis pycom01g18060 pycom07g21140
rosa_chinensis RchiOBHm_Chr1g0372231
rosa_rugosa Rorug01G0370600
rosa_samantha Rh1AG378900 Rh1BG342400 Rh1CG356000 Rh1DG373600
rosa_wichuraiana Rw1G033340

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 298, 421
AccBSI CCGCTC 2 cut(s) 190, 419
AccII CGCG 2 cut(s) 160, 198
AclWI GGATC 3 cut(s) 106, 114, 127
AcsI RAATTY 1 cut(s) 139
AcuI CTGAAG 1 cut(s) 719
AcyI GRCGYC 2 cut(s) 299, 422
AfaI GTAC 2 cut(s) 320, 334
AgsI TTSAA 1 cut(s) 586
AluBI AGCT 1 cut(s) 697
AluI AGCT 1 cut(s) 697
Alw26I GTCTC 1 cut(s) 350
AlwI GGATC 3 cut(s) 106, 114, 127
AoxI GGCC 4 cut(s) 344, 566, 684, 720
ApaI GGGCCC 1 cut(s) 570
ApeKI GCWGC 3 cut(s) 221, 639, 694
ApoI RAATTY 1 cut(s) 139
AspLEI GCGC 5 cut(s) 41, 160, 198, 301, 424
AspS9I GGNCC 3 cut(s) 566, 567, 685
AsuC2I CCSGG 2 cut(s) 124, 293
AsuHPI GGTGA 1 cut(s) 494
BaeGI GKGCMC 1 cut(s) 570
BamHI GGATCC 1 cut(s) 119
BanI GGYRCC 2 cut(s) 298, 421
BanII GRGCYC 3 cut(s) 396, 570, 624
BbsI GAAGAC 1 cut(s) 593
BbvI GCAGC 3 cut(s) 208, 626, 706
BccI CCATC 1 cut(s) 148
BceAI ACGGC 4 cut(s) 26, 42, 409, 451
BclI TGATCA 1 cut(s) 49
BcnI CCSGG 2 cut(s) 124, 293
BcoDI GTCTC 1 cut(s) 350
BfaI CTAG 1 cut(s) 724
BfoI RGCGCY 3 cut(s) 42, 302, 425
BisI GCNGC 8 cut(s) 222, 225, 228, 231, 302, 420, 640, 695
BlsI GCNGC 8 cut(s) 223, 226, 229, 232, 303, 421, 641, 696
Bme1390I CCNGG 2 cut(s) 124, 293
BmgT120I GGNCC 3 cut(s) 566, 567, 685
BmiI GGNNCC 5 cut(s) 121, 300, 423, 568, 660
BmrFI CCNGG 2 cut(s) 124, 293
BmsI GCATC 2 cut(s) 14, 502
BpiI GAAGAC 1 cut(s) 593
BpmI CTGGAG 1 cut(s) 374
BpuMI CCSGG 2 cut(s) 124, 293
BsaHI GRCGYC 2 cut(s) 299, 422
BsaJI CCNNGG 3 cut(s) 115, 123, 347
BsaWI WCCGGW 1 cut(s) 661
BsaXI ACNNNNNCTCC 2 cut(s) 316, 346
BseDI CCNNGG 3 cut(s) 115, 123, 347
BseGI GGATG 3 cut(s) 253, 261, 517
BseMII CTCAG 1 cut(s) 409
BseRI GAGGAG 3 cut(s) 340, 389, 392
BseSI GKGCMC 1 cut(s) 570
BseXI GCAGC 3 cut(s) 208, 626, 706
BsgI GTGCAG 2 cut(s) 563, 625
Bsh1236I CGCG 2 cut(s) 160, 198
BshFI GGCC 4 cut(s) 346, 568, 686, 722
BshNI GGYRCC 2 cut(s) 298, 421
BsiSI CCGG 3 cut(s) 123, 292, 662
BslFI GGGAC 1 cut(s) 401
BsmAI GTCTC 1 cut(s) 350
BsmBI CGTCTC 1 cut(s) 350
BsmFI GGGAC 1 cut(s) 401
BsnI GGCC 4 cut(s) 346, 568, 686, 722
Bsp120I GGGCCC 1 cut(s) 566
Bsp1286I GDGCHC 3 cut(s) 396, 570, 624
Bsp143I GATC 5 cut(s) 49, 111, 119, 276, 516
BspANI GGCC 4 cut(s) 346, 568, 686, 722
BspCNI CTCAG 1 cut(s) 408
BspFNI CGCG 2 cut(s) 160, 198
BspLI GGNNCC 5 cut(s) 121, 300, 423, 568, 660
BspPI GGATC 3 cut(s) 106, 114, 127
BspT107I GGYRCC 2 cut(s) 298, 421
BsrBI CCGCTC 2 cut(s) 190, 419
BssECI CCNNGG 3 cut(s) 115, 123, 347
BssMI GATC 5 cut(s) 49, 111, 119, 276, 516
BssNI GRCGYC 2 cut(s) 299, 422
Bst4CI ACNGT 3 cut(s) 341, 476, 494
BstACI GRCGYC 2 cut(s) 299, 422
BstAPI GCANNNNNTGC 1 cut(s) 72
BstC8I GCNNGC 3 cut(s) 162, 570, 720
BstDEI CTNAG 1 cut(s) 395
BstDSI CCRYGG 1 cut(s) 115
BstF5I GGATG 3 cut(s) 253, 261, 517
BstFNI CGCG 2 cut(s) 160, 198
BstH2I RGCGCY 3 cut(s) 42, 302, 425
BstHHI GCGC 5 cut(s) 41, 160, 198, 301, 424
BstKTI GATC 5 cut(s) 52, 114, 122, 279, 519
BstMAI GTCTC 1 cut(s) 350
BstMBI GATC 5 cut(s) 49, 111, 119, 276, 516
BstMWI GCNNNNNNNGC 6 cut(s) 63, 72, 227, 230, 419, 639
BstSCI CCNGG 2 cut(s) 122, 291
BstSLI GKGCMC 1 cut(s) 570
BstUI CGCG 2 cut(s) 160, 198
BstV1I GCAGC 3 cut(s) 208, 626, 706
BstV2I GAAGAC 1 cut(s) 593
BstX2I RGATCY 1 cut(s) 119
BstYI RGATCY 1 cut(s) 119
BsuRI GGCC 4 cut(s) 346, 568, 686, 722
BtgI CCRYGG 1 cut(s) 115
BtgZI GCGATG 2 cut(s) 38, 167
BtsCI GGATG 3 cut(s) 253, 261, 517
Cac8I GCNNGC 3 cut(s) 162, 570, 720
CfoI GCGC 5 cut(s) 41, 160, 198, 301, 424
Cfr13I GGNCC 3 cut(s) 566, 567, 685
Csp6I GTAC 2 cut(s) 319, 333
CviQI GTAC 2 cut(s) 319, 333
DdeI CTNAG 1 cut(s) 395
DinI GGCGCC 2 cut(s) 300, 423
DpnI GATC 5 cut(s) 51, 113, 121, 278, 518
DpnII GATC 5 cut(s) 49, 111, 119, 276, 516
Eco147I AGGCCT 1 cut(s) 722
Eco24I GRGCYC 3 cut(s) 396, 570, 624
Eco57I CTGAAG 1 cut(s) 719
EcoT38I GRGCYC 3 cut(s) 396, 570, 624
EgeI GGCGCC 2 cut(s) 300, 423
EheI GGCGCC 2 cut(s) 300, 423
Esp3I CGTCTC 1 cut(s) 350
FaiI YATR 2 cut(s) 237, 629
FaqI GGGAC 1 cut(s) 401
FauI CCCGC 6 cut(s) 153, 157, 177, 360, 406, 577
FbaI TGATCA 1 cut(s) 49
Fnu4HI GCNGC 8 cut(s) 222, 225, 228, 231, 302, 420, 640, 695
FokI GGATG 3 cut(s) 260, 268, 524
FriOI GRGCYC 3 cut(s) 396, 570, 624
Fsp4HI GCNGC 8 cut(s) 222, 225, 228, 231, 302, 420, 640, 695
FspBI CTAG 1 cut(s) 724
GlaI GCGC 5 cut(s) 40, 159, 197, 300, 423
GluI GCNGC 8 cut(s) 222, 225, 228, 231, 302, 420, 640, 695
GsuI CTGGAG 1 cut(s) 374
HaeII RGCGCY 3 cut(s) 42, 302, 425
HaeIII GGCC 4 cut(s) 346, 568, 686, 722
HapII CCGG 3 cut(s) 123, 292, 662
HhaI GCGC 5 cut(s) 41, 160, 198, 301, 424
Hin1I GRCGYC 2 cut(s) 299, 422
Hin6I GCGC 5 cut(s) 39, 158, 196, 299, 422
HinP1I GCGC 5 cut(s) 39, 158, 196, 299, 422
HinfI GANTC 2 cut(s) 15, 286
HpaII CCGG 3 cut(s) 123, 292, 662
HphI GGTGA 1 cut(s) 494
Hpy166II GTNNAC 1 cut(s) 319
Hpy188I TCNGA 4 cut(s) 26, 63, 99, 398
Hpy188III TCNNGA 4 cut(s) 47, 283, 431, 520
Hpy8I GTNNAC 1 cut(s) 319
Hpy99I CGWCG 2 cut(s) 437, 452
HpyAV CCTTC 2 cut(s) 544, 676
HpyCH4III ACNGT 3 cut(s) 341, 476, 494
HpyCH4IV ACGT 1 cut(s) 400
HpyCH4V TGCA 4 cut(s) 81, 544, 642, 718
HpyF10VI GCNNNNNNNGC 6 cut(s) 63, 72, 227, 230, 419, 639
HpyF3I CTNAG 1 cut(s) 395
HpySE526I ACGT 1 cut(s) 400
Hsp92I GRCGYC 2 cut(s) 299, 422
HspAI GCGC 5 cut(s) 39, 158, 196, 299, 422
KasI GGCGCC 2 cut(s) 298, 421
Ksp22I TGATCA 1 cut(s) 49
Kzo9I GATC 5 cut(s) 49, 111, 119, 276, 516
LmnI GCTCC 4 cut(s) 99, 187, 213, 416
LpnPI CCDG 9 cut(s) 136, 296, 305, 338, 530, 586, 661, 675, 704
Lsp1109I GCAGC 3 cut(s) 208, 626, 706
LweI GCATC 2 cut(s) 14, 502
MaeI CTAG 1 cut(s) 724
MaeII ACGT 1 cut(s) 400
MaeIII GTNAC 2 cut(s) 488, 575
MalI GATC 5 cut(s) 51, 113, 121, 278, 518
MbiI CCGCTC 2 cut(s) 190, 419
MboI GATC 5 cut(s) 49, 111, 119, 276, 516
MboII GAAGA 4 cut(s) 436, 464, 598, 712
MflI RGATCY 1 cut(s) 119
MhlI GDGCHC 3 cut(s) 396, 570, 624
MluCI AATT 4 cut(s) 20, 139, 382, 703
Mly113I GGCGCC 2 cut(s) 299, 422
MmeI TCCRAC 1 cut(s) 225
MspA1I CMGCKG 2 cut(s) 304, 697
MspI CCGG 3 cut(s) 123, 292, 662
MspR9I CCNGG 2 cut(s) 124, 293
MvnI CGCG 2 cut(s) 160, 198
MwoI GCNNNNNNNGC 6 cut(s) 63, 72, 227, 230, 419, 639
NarI GGCGCC 2 cut(s) 299, 422
NciI CCSGG 2 cut(s) 124, 293
NdeII GATC 5 cut(s) 49, 111, 119, 276, 516
NlaIV GGNNCC 5 cut(s) 121, 300, 423, 568, 660
NmeAIII GCCGAG 1 cut(s) 372
PceI AGGCCT 1 cut(s) 722
PcsI WCGNNNNNNNCGW 1 cut(s) 149
PfeI GAWTC 2 cut(s) 15, 286
PfoI TCCNGGA 1 cut(s) 291
PkrI GCNGC 8 cut(s) 223, 226, 229, 232, 303, 421, 641, 696
PluTI GGCGCC 2 cut(s) 302, 425
PspN4I GGNNCC 5 cut(s) 121, 300, 423, 568, 660
PspOMI GGGCCC 1 cut(s) 566
PspPI GGNCC 3 cut(s) 566, 567, 685
PsuI RGATCY 1 cut(s) 119
PvuII CAGCTG 1 cut(s) 697
RsaI GTAC 2 cut(s) 320, 334
RsaNI GTAC 2 cut(s) 319, 333
SatI GCNGC 8 cut(s) 222, 225, 228, 231, 302, 420, 640, 695
Sau3AI GATC 5 cut(s) 49, 111, 119, 276, 516
Sau96I GGNCC 3 cut(s) 566, 567, 685
ScrFI CCNGG 2 cut(s) 124, 293
SduI GDGCHC 3 cut(s) 396, 570, 624
SetI ASST 4 cut(s) 31, 205, 403, 699
SfaNI GCATC 2 cut(s) 14, 502
SfoI GGCGCC 2 cut(s) 300, 423
Sse9I AATT 4 cut(s) 20, 139, 382, 703
SseBI AGGCCT 1 cut(s) 722
SspDI GGCGCC 2 cut(s) 298, 421
SspMI CTAG 1 cut(s) 724
StuI AGGCCT 1 cut(s) 722
StyD4I CCNGG 2 cut(s) 122, 291
TaaI ACNGT 3 cut(s) 341, 476, 494
TaiI ACGT 1 cut(s) 403
TaqI TCGA 2 cut(s) 107, 450
TasI AATT 4 cut(s) 20, 139, 382, 703
TauI GCSGC 5 cut(s) 227, 230, 233, 304, 422
TfiI GAWTC 2 cut(s) 15, 286
TseI GCWGC 3 cut(s) 221, 639, 694
TspGWI ACGGA 4 cut(s) 104, 350, 374, 519
XapI RAATTY 1 cut(s) 139
XspI CTAG 1 cut(s) 724
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.