Prupe.2G264000_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp02
OG0015947
Physical Location & Seq
Forward (+)
27171995 .. 27173459
1465 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.2G264000.1

Sequence Viewer

Length: 729 bp
ATGGCATCCCTGGGCCTCCAATTCGGAGGAAGTCGATGCTTCGATATTTGCCAAGACAATCTTTGCAGTCCCTCGTCCAATCAGAGGCCGTGTGGTGCGATGATCCGCAGCCGCACCGGATCAAGGGGTGCGAGAGTGAATTCATTGGCGGTGGCGCGGGCGAGTTTGGAAGCGGTGCCCCGACAACGGCGTCGCGGCGGTGGAAAAGGAAATAGTGCCGAGACGGCGGCGGCGGCGTATGAGAAGTTGGACGCGTGGATGAGAGATTCGGTGGTGGAGATCGTCAAGAATCTTAGAGAAGCGCCGCTGTTGGTCAATGTGTACGGGAAGGGCATTACGGACGAGAAGCCGAGGATTGAAACGGAGAAGGGGGTGGAGGAAGAGAATTGGGAGGTGCTCAGGCGAAAATGGGAGGGTGGGGTGGCGCCGTTTCCTGACGGCGTTATCTTCGTTGAAGAACTCATGGATGATGATGAAGGTGAAGGTGACCGGAACGTTGACGGAGATGGGATCACGCGGGCATGGGGGCTAGTGGTGCAGGGGAAAGGGGAGGAGTGTGGGCCAGCTTGTTACTTGTTAAAGACGAGTAAAGTAAAGGCCGGGTCGGGTTGTGGGCTGGGGATGGGCTTGGGATGCACTCATTTTTGCTTGGTTCGGGTCAAGAGTTTCAGGGAGACGGCCCAATCTCAGTTGAAGAATTGCTGGCTATTGCAGGCCCAGGCCCAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

243

Amino Acids

26.24

Weight (kDa)

7.45

Isoelectric Point (pI)

46.02

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015947)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G56360 AT5G05250
fragaria_vesca FvH4_7g25910
malus_domestica MD01G1167600.v1.1 MD07G1233600.v1.1
prunus_persica Prupe.2G264000_v2.0.a1
pyrus_communis pycom01g18060 pycom07g21140
rosa_chinensis RchiOBHm_Chr1g0372231
rosa_rugosa Rorug01G0370600
rosa_samantha Rh1AG378900 Rh1BG342400 Rh1CG356000 Rh1DG373600
rosa_wichuraiana Rw1G033340

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 189
AccB1I GGYRCC 2 cut(s) 175, 424
AccII CGCG 4 cut(s) 157, 195, 254, 517
AclI AACGTT 1 cut(s) 495
AclWI GGATC 3 cut(s) 97, 127, 518
AcsI RAATTY 1 cut(s) 139
AcyI GRCGYC 2 cut(s) 190, 425
AfaI GTAC 1 cut(s) 323
AfiI CCNNNNNNNGG 3 cut(s) 84, 123, 186
AflIII ACRYGT 1 cut(s) 252
AgsI TTSAA 3 cut(s) 359, 455, 694
AjnI CCWGG 2 cut(s) 9, 717
AluBI AGCT 1 cut(s) 566
AluI AGCT 1 cut(s) 566
Alw21I GWGCWC 1 cut(s) 399
Alw26I GTCTC 2 cut(s) 215, 668
AlwI GGATC 3 cut(s) 97, 127, 518
AoxI GGCC 7 cut(s) 13, 86, 560, 597, 678, 714, 720
ApeKI GCWGC 1 cut(s) 108
ApoI RAATTY 1 cut(s) 139
AspLEI GCGC 3 cut(s) 157, 304, 427
AspS9I GGNCC 5 cut(s) 13, 560, 679, 715, 721
AsuC2I CCSGG 1 cut(s) 601
AsuHPI GGTGA 2 cut(s) 491, 497
BaeGI GKGCMC 1 cut(s) 180
BanI GGYRCC 2 cut(s) 175, 424
Bbv12I GWGCWC 1 cut(s) 399
BbvI GCAGC 1 cut(s) 120
BccI CCATC 2 cut(s) 500, 616
BceAI ACGGC 6 cut(s) 73, 203, 240, 412, 454, 693
BciT130I CCWGG 2 cut(s) 11, 719
BcnI CCSGG 1 cut(s) 601
BcoDI GTCTC 2 cut(s) 215, 668
BfaI CTAG 1 cut(s) 530
BfoI RGCGCY 2 cut(s) 305, 428
BglI GCCNNNNNGGC 1 cut(s) 224
BisI GCNGC 7 cut(s) 109, 112, 196, 228, 231, 234, 305
BlsI GCNGC 7 cut(s) 110, 113, 197, 229, 232, 235, 306
Bme1390I CCNGG 3 cut(s) 11, 601, 719
BmgT120I GGNCC 5 cut(s) 13, 560, 679, 715, 721
BmiI GGNNCC 2 cut(s) 177, 426
BmrFI CCNGG 3 cut(s) 11, 601, 719
BmsI GCATC 3 cut(s) 14, 26, 623
Bpu10I CCTNAGC 1 cut(s) 398
BpuMI CCSGG 1 cut(s) 601
BsaHI GRCGYC 2 cut(s) 190, 425
BsaJI CCNNGG 4 cut(s) 9, 10, 350, 717
BsaWI WCCGGW 2 cut(s) 116, 489
Bsc4I CCNNNNNNNGG 3 cut(s) 84, 123, 186
BseBI CCWGG 2 cut(s) 11, 719
BseDI CCNNGG 4 cut(s) 9, 10, 350, 717
BseGI GGATG 5 cut(s) 5, 264, 472, 627, 638
BseLI CCNNNNNNNGG 3 cut(s) 84, 123, 186
BseMII CTCAG 2 cut(s) 412, 701
BseRI GAGGAG 1 cut(s) 566
BseSI GKGCMC 1 cut(s) 180
BseXI GCAGC 1 cut(s) 120
BseYI CCCAGC 1 cut(s) 616
BsgI GTGCAG 1 cut(s) 557
Bsh1236I CGCG 4 cut(s) 157, 195, 254, 517
BshFI GGCC 7 cut(s) 15, 88, 562, 599, 680, 716, 722
BshNI GGYRCC 2 cut(s) 175, 424
BsiHKAI GWGCWC 1 cut(s) 399
BsiSI CCGG 3 cut(s) 117, 490, 600
BslFI GGGAC 1 cut(s) 54
BslI CCNNNNNNNGG 3 cut(s) 84, 123, 186
BsmAI GTCTC 2 cut(s) 215, 668
BsmBI CGTCTC 2 cut(s) 215, 668
BsmFI GGGAC 1 cut(s) 54
BsnI GGCC 7 cut(s) 15, 88, 562, 599, 680, 716, 722
Bsp1286I GDGCHC 2 cut(s) 180, 399
Bsp143I GATC 4 cut(s) 102, 119, 279, 510
BspANI GGCC 7 cut(s) 15, 88, 562, 599, 680, 716, 722
BspCNI CTCAG 2 cut(s) 411, 700
BspFNI CGCG 4 cut(s) 157, 195, 254, 517
BspLI GGNNCC 2 cut(s) 177, 426
BspPI GGATC 3 cut(s) 97, 127, 518
BspT107I GGYRCC 2 cut(s) 175, 424
BssECI CCNNGG 4 cut(s) 9, 10, 350, 717
BssMI GATC 4 cut(s) 102, 119, 279, 510
BssNI GRCGYC 2 cut(s) 190, 425
Bst2UI CCWGG 2 cut(s) 11, 719
Bst6I CTCTTC 1 cut(s) 375
BstACI GRCGYC 2 cut(s) 190, 425
BstC8I GCNNGC 5 cut(s) 159, 519, 564, 704, 714
BstDEI CTNAG 3 cut(s) 293, 398, 687
BstEII GGTNACC 1 cut(s) 485
BstF5I GGATG 5 cut(s) 5, 264, 472, 627, 638
BstFNI CGCG 4 cut(s) 157, 195, 254, 517
BstH2I RGCGCY 2 cut(s) 305, 428
BstHHI GCGC 3 cut(s) 157, 304, 427
BstKTI GATC 4 cut(s) 105, 122, 282, 513
BstMAI GTCTC 2 cut(s) 215, 668
BstMBI GATC 4 cut(s) 102, 119, 279, 510
BstMWI GCNNNNNNNGC 4 cut(s) 224, 233, 535, 633
BstNI CCWGG 2 cut(s) 11, 719
BstPI GGTNACC 1 cut(s) 485
BstSCI CCNGG 3 cut(s) 9, 599, 717
BstSLI GKGCMC 1 cut(s) 180
BstUI CGCG 4 cut(s) 157, 195, 254, 517
BstV1I GCAGC 1 cut(s) 120
BsuRI GGCC 7 cut(s) 15, 88, 562, 599, 680, 716, 722
BtgZI GCGATG 1 cut(s) 113
BtsCI GGATG 5 cut(s) 5, 264, 472, 627, 638
Cac8I GCNNGC 5 cut(s) 159, 519, 564, 704, 714
CfoI GCGC 3 cut(s) 157, 304, 427
Cfr13I GGNCC 5 cut(s) 13, 560, 679, 715, 721
CseI GACGC 2 cut(s) 179, 260
Csp6I GTAC 1 cut(s) 322
CviAII CATG 2 cut(s) 463, 522
CviQI GTAC 1 cut(s) 322
DdeI CTNAG 3 cut(s) 293, 398, 687
DinI GGCGCC 1 cut(s) 426
DpnI GATC 4 cut(s) 104, 121, 281, 512
DpnII GATC 4 cut(s) 102, 119, 279, 510
DrdI GACNNNNNNGTC 1 cut(s) 189
DseDI GACNNNNNNGTC 1 cut(s) 189
Eam1104I CTCTTC 1 cut(s) 375
EarI CTCTTC 1 cut(s) 375
Eco91I GGTNACC 1 cut(s) 485
EcoO65I GGTNACC 1 cut(s) 485
EcoRI GAATTC 1 cut(s) 139
EcoRII CCWGG 2 cut(s) 9, 717
EgeI GGCGCC 1 cut(s) 426
EheI GGCGCC 1 cut(s) 426
Esp3I CGTCTC 2 cut(s) 215, 668
FaeI CATG 2 cut(s) 466, 525
FaiI YATR 3 cut(s) 240, 464, 523
FalI AAGNNNNNCTT 2 cut(s) 45, 77
FaqI GGGAC 1 cut(s) 54
FatI CATG 2 cut(s) 462, 521
FauI CCCGC 2 cut(s) 150, 510
Fnu4HI GCNGC 7 cut(s) 109, 112, 196, 228, 231, 234, 305
FokI GGATG 4 cut(s) 271, 479, 634, 645
Fsp4HI GCNGC 7 cut(s) 109, 112, 196, 228, 231, 234, 305
FspBI CTAG 1 cut(s) 530
GlaI GCGC 3 cut(s) 156, 303, 426
GluI GCNGC 7 cut(s) 109, 112, 196, 228, 231, 234, 305
GsaI CCCAGC 1 cut(s) 620
HaeII RGCGCY 2 cut(s) 305, 428
HaeIII GGCC 7 cut(s) 15, 88, 562, 599, 680, 716, 722
HapII CCGG 3 cut(s) 117, 490, 600
HgaI GACGC 2 cut(s) 179, 260
HhaI GCGC 3 cut(s) 157, 304, 427
Hin1I GRCGYC 2 cut(s) 190, 425
Hin1II CATG 2 cut(s) 466, 525
Hin6I GCGC 3 cut(s) 155, 302, 425
HinP1I GCGC 3 cut(s) 155, 302, 425
HincII GTYRAC 1 cut(s) 499
HindII GTYRAC 1 cut(s) 499
HinfI GANTC 2 cut(s) 266, 289
HpaII CCGG 3 cut(s) 117, 490, 600
HphI GGTGA 2 cut(s) 491, 497
Hpy166II GTNNAC 2 cut(s) 322, 499
Hpy188I TCNGA 2 cut(s) 26, 84
Hpy188III TCNNGA 3 cut(s) 286, 434, 661
Hpy8I GTNNAC 2 cut(s) 322, 499
Hpy99I CGWCG 1 cut(s) 195
HpyAV CCTTC 4 cut(s) 322, 361, 470, 476
HpyCH4IV ACGT 1 cut(s) 495
HpyCH4V TGCA 4 cut(s) 66, 538, 636, 712
HpyF10VI GCNNNNNNNGC 4 cut(s) 224, 233, 535, 633
HpyF3I CTNAG 3 cut(s) 293, 398, 687
HpySE526I ACGT 1 cut(s) 495
Hsp92I GRCGYC 2 cut(s) 190, 425
Hsp92II CATG 2 cut(s) 466, 525
HspAI GCGC 3 cut(s) 155, 302, 425
KasI GGCGCC 1 cut(s) 424
Kzo9I GATC 4 cut(s) 102, 119, 279, 510
Lsp1109I GCAGC 1 cut(s) 120
LweI GCATC 3 cut(s) 14, 26, 623
MaeI CTAG 1 cut(s) 530
MaeII ACGT 1 cut(s) 495
MaeIII GTNAC 2 cut(s) 485, 569
MalI GATC 4 cut(s) 104, 121, 281, 512
MboI GATC 4 cut(s) 102, 119, 279, 510
MboII GAAGA 4 cut(s) 392, 439, 467, 706
MhlI GDGCHC 2 cut(s) 180, 399
MluCI AATT 4 cut(s) 20, 139, 385, 697
MluI ACGCGT 1 cut(s) 252
Mly113I GGCGCC 1 cut(s) 425
MmeI TCCRAC 1 cut(s) 228
MnlI CCTC 9 cut(s) 20, 26, 78, 82, 345, 370, 385, 406, 544
MseI TTAA 1 cut(s) 578
MspA1I CMGCKG 1 cut(s) 307
MspI CCGG 3 cut(s) 117, 490, 600
MspR9I CCNGG 3 cut(s) 11, 601, 719
MvaI CCWGG 2 cut(s) 11, 719
MvnI CGCG 4 cut(s) 157, 195, 254, 517
MwoI GCNNNNNNNGC 4 cut(s) 224, 233, 535, 633
NarI GGCGCC 1 cut(s) 425
NciI CCSGG 1 cut(s) 601
NdeII GATC 4 cut(s) 102, 119, 279, 510
NlaIII CATG 2 cut(s) 466, 525
NlaIV GGNNCC 2 cut(s) 177, 426
NmeAIII GCCGAG 2 cut(s) 244, 375
NmuCI GTSAC 1 cut(s) 485
PasI CCCWGGG 1 cut(s) 10
PfeI GAWTC 2 cut(s) 266, 289
PkrI GCNGC 7 cut(s) 110, 113, 197, 229, 232, 235, 306
PluTI GGCGCC 1 cut(s) 428
Psp1406I AACGTT 1 cut(s) 495
Psp6I CCWGG 2 cut(s) 9, 717
PspEI GGTNACC 1 cut(s) 485
PspFI CCCAGC 1 cut(s) 616
PspGI CCWGG 2 cut(s) 9, 717
PspN4I GGNNCC 2 cut(s) 177, 426
PspPI GGNCC 5 cut(s) 13, 560, 679, 715, 721
RsaI GTAC 1 cut(s) 323
RsaNI GTAC 1 cut(s) 322
SaqAI TTAA 1 cut(s) 578
SatI GCNGC 7 cut(s) 109, 112, 196, 228, 231, 234, 305
Sau3AI GATC 4 cut(s) 102, 119, 279, 510
Sau96I GGNCC 5 cut(s) 13, 560, 679, 715, 721
ScrFI CCNGG 3 cut(s) 11, 601, 719
SduI GDGCHC 2 cut(s) 180, 399
SetI ASST 5 cut(s) 396, 481, 487, 498, 568
SfaNI GCATC 3 cut(s) 14, 26, 623
SfoI GGCGCC 1 cut(s) 426
Sse9I AATT 4 cut(s) 20, 139, 385, 697
SspDI GGCGCC 1 cut(s) 424
SspMI CTAG 1 cut(s) 530
StyD4I CCNGG 3 cut(s) 9, 599, 717
TaiI ACGT 1 cut(s) 498
TaqI TCGA 2 cut(s) 34, 42
TasI AATT 4 cut(s) 20, 139, 385, 697
TauI GCSGC 6 cut(s) 114, 198, 230, 233, 236, 307
TfiI GAWTC 2 cut(s) 266, 289
Tru1I TTAA 1 cut(s) 578
Tru9I TTAA 1 cut(s) 578
TseFI GTSAC 1 cut(s) 485
TseI GCWGC 1 cut(s) 108
Tsp45I GTSAC 1 cut(s) 485
TspDTI ATGAA 2 cut(s) 132, 489
TspGWI ACGGA 3 cut(s) 353, 377, 516
XapI RAATTY 1 cut(s) 139
XspI CTAG 1 cut(s) 530
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.