Rh1CG356000

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1C
OG0015947
Physical Location & Seq
Forward (+)
63056652 .. 63058414
1763 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1CG356000.1

Sequence Viewer

Length: 708 bp
ATGGCGTCGTCGCTGGGCATTCACTGCGGAGGCACCCGATATGTCGGTCGTCAAGATCAGAATAATCTGTGCAGTTCTTCTGACTACGCTCGGCGTTGTTCTTGTTCCGTCGCGATTCCGGCTCCGAGGAATCGCGGCAGGGGCACAATCGTAAATTCGTCTTGTGTGGCGGTGGCGGAAACGAAGAGGAGCGTGGGGCGGGAAAGGAGCGGGAGCGAGACGGCGGCGTACGAGAAGGTGGACGAGTGGATGAGGGATTCGGTGACGGAGATCGTCAAGAACCTAAGGGAGGCGCCGCTGCTGGTCCACGTGTACGGTGGGAAAGAGAAGCGGAGGATGGAGACGGAGAAGAAAGTGGAGGAGGAGAATTGGGACGCGCTGAAGGGGAAGTGGGAGGCCGGAGAGGCGCCGTTGCCGGAAGGCGTTATATTAGTGGAGGAGCTGATGGACGACGGCGAAGTTGACGGCACAGAAGATTCCGTTATCGATGGGATAACGCGAGCGTGGGGGCTGGTGGTGCAGGGGAAGGGGGAGGAGAGTGGCCCAGCTTGTTATTTGTTGAAGACGAGTGGAGTTAATGTCGGGTCGGGTTATGGGCTGGGGATGGGAATGGGCTGCACTCATTTTTGTTTGGTCCGGGTCAAGAGTTTTAGGGAGACGGCCCAGTCGCAGCTCAAGAACAGTTGGTTGTTGCAGGCACAGATGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

235

Amino Acids

25.64

Weight (kDa)

5.78

Isoelectric Point (pI)

46.69

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF7804 PF25089 76 - 153 1.4e-31 Domain of unknown function (DUF7804)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015947)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G56360 AT5G05250
fragaria_vesca FvH4_7g25910
malus_domestica MD01G1167600.v1.1 MD07G1233600.v1.1
prunus_persica Prupe.2G264000_v2.0.a1
pyrus_communis pycom01g18060 pycom07g21140
rosa_chinensis RchiOBHm_Chr1g0372231
rosa_rugosa Rorug01G0370600
rosa_samantha Rh1AG378900 Rh1BG342400 Rh1CG356000 Rh1DG373600
rosa_wichuraiana Rw1G033340

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 664
AccB1I GGYRCC 3 cut(s) 32, 292, 406
AccBSI CCGCTC 1 cut(s) 210
AccII CGCG 4 cut(s) 113, 135, 377, 499
AciI CCGC 9 cut(s) 27, 135, 170, 176, 199, 210, 224, 296, 331
AcsI RAATTY 1 cut(s) 154
AcuI CTGAAG 1 cut(s) 401
AcvI CACGTG 1 cut(s) 310
AcyI GRCGYC 3 cut(s) 5, 293, 407
AfaI GTAC 2 cut(s) 230, 314
AfiI CCNNNNNNNGG 1 cut(s) 289
AflIII ACRYGT 1 cut(s) 309
AgsI TTSAA 1 cut(s) 562
AluBI AGCT 3 cut(s) 442, 548, 673
AluI AGCT 3 cut(s) 442, 548, 673
Alw26I GTCTC 3 cut(s) 212, 335, 650
AoxI GGCC 3 cut(s) 396, 541, 660
ApeKI GCWGC 3 cut(s) 298, 615, 670
ApoI RAATTY 1 cut(s) 154
AspLEI GCGC 3 cut(s) 295, 379, 409
AspS9I GGNCC 4 cut(s) 304, 542, 634, 661
AsuC2I CCSGG 1 cut(s) 638
AsuHPI GGTGA 1 cut(s) 274
AvaII GGWCC 2 cut(s) 304, 634
AxyI CCTNAGG 1 cut(s) 284
BaeGI GKGCMC 1 cut(s) 146
BanI GGYRCC 3 cut(s) 32, 292, 406
BbrPI CACGTG 1 cut(s) 310
BbsI GAAGAC 1 cut(s) 569
BbvI GCAGC 3 cut(s) 285, 602, 682
BccI CCATC 4 cut(s) 331, 439, 482, 598
BceAI ACGGC 5 cut(s) 237, 394, 469, 481, 675
BcnI CCSGG 1 cut(s) 638
BcoDI GTCTC 3 cut(s) 212, 335, 650
BfoI RGCGCY 2 cut(s) 296, 410
BglI GCCNNNNNGGC 1 cut(s) 404
BisI GCNGC 6 cut(s) 136, 225, 296, 299, 616, 671
BlsI GCNGC 6 cut(s) 137, 226, 297, 300, 617, 672
Bme1390I CCNGG 1 cut(s) 638
Bme18I GGWCC 2 cut(s) 304, 634
BmgT120I GGNCC 4 cut(s) 304, 542, 634, 661
BmiI GGNNCC 4 cut(s) 34, 123, 294, 408
BmrFI CCNGG 1 cut(s) 638
BmrI ACTGGG 1 cut(s) 658
BmuI ACTGGG 1 cut(s) 658
BpiI GAAGAC 1 cut(s) 569
BpuEI CTTGAG 1 cut(s) 659
BpuMI CCSGG 1 cut(s) 638
Bsa29I ATCGAT 1 cut(s) 486
BsaAI YACGTR 1 cut(s) 310
BsaHI GRCGYC 3 cut(s) 5, 293, 407
BsaJI CCNNGG 1 cut(s) 125
BsaXI ACNNNNNCTCC 2 cut(s) 564, 594
Bsc4I CCNNNNNNNGG 1 cut(s) 289
Bse1I ACTGG 1 cut(s) 664
Bse21I CCTNAGG 1 cut(s) 284
BseCI ATCGAT 1 cut(s) 486
BseDI CCNNGG 1 cut(s) 125
BseGI GGATG 3 cut(s) 255, 342, 609
BseLI CCNNNNNNNGG 1 cut(s) 289
BseNI ACTGG 1 cut(s) 664
BseRI GAGGAG 5 cut(s) 202, 374, 377, 452, 548
BseSI GKGCMC 1 cut(s) 146
BseXI GCAGC 3 cut(s) 285, 602, 682
BseYI CCCAGC 3 cut(s) 13, 544, 598
BsgI GTGCAG 3 cut(s) 91, 539, 601
Bsh1236I CGCG 4 cut(s) 113, 135, 377, 499
Bsh1285I CGRYCG 1 cut(s) 49
BshFI GGCC 3 cut(s) 398, 543, 662
BshNI GGYRCC 3 cut(s) 32, 292, 406
BshVI ATCGAT 1 cut(s) 486
BsiEI CGRYCG 1 cut(s) 49
BsiSI CCGG 4 cut(s) 119, 399, 416, 637
BsiWI CGTACG 1 cut(s) 228
BslFI GGGAC 1 cut(s) 386
BslI CCNNNNNNNGG 1 cut(s) 289
BsmAI GTCTC 3 cut(s) 212, 335, 650
BsmBI CGTCTC 3 cut(s) 212, 335, 650
BsmFI GGGAC 1 cut(s) 386
BsmI GAATGC 1 cut(s) 18
BsnI GGCC 3 cut(s) 398, 543, 662
Bsp1286I GDGCHC 1 cut(s) 146
Bsp143I GATC 2 cut(s) 55, 270
Bsp68I TCGCGA 1 cut(s) 113
BspACI CCGC 9 cut(s) 27, 135, 170, 176, 199, 210, 224, 296, 331
BspANI GGCC 3 cut(s) 398, 543, 662
BspDI ATCGAT 1 cut(s) 486
BspFNI CGCG 4 cut(s) 113, 135, 377, 499
BspLI GGNNCC 4 cut(s) 34, 123, 294, 408
BspT107I GGYRCC 3 cut(s) 32, 292, 406
BsrBI CCGCTC 1 cut(s) 210
BsrI ACTGG 1 cut(s) 664
BssECI CCNNGG 1 cut(s) 125
BssMI GATC 2 cut(s) 55, 270
BssNI GRCGYC 3 cut(s) 5, 293, 407
Bst4CI ACNGT 2 cut(s) 317, 683
Bst6I CTCTTC 1 cut(s) 179
BstACI GRCGYC 3 cut(s) 5, 293, 407
BstAPI GCANNNNNTGC 1 cut(s) 24
BstBAI YACGTR 1 cut(s) 310
BstC8I GCNNGC 2 cut(s) 501, 696
BstDEI CTNAG 1 cut(s) 284
BstENI CCTNNNNNAGG 1 cut(s) 287
BstF5I GGATG 3 cut(s) 255, 342, 609
BstFNI CGCG 4 cut(s) 113, 135, 377, 499
BstH2I RGCGCY 2 cut(s) 296, 410
BstHHI GCGC 3 cut(s) 295, 379, 409
BstKTI GATC 2 cut(s) 58, 273
BstMAI GTCTC 3 cut(s) 212, 335, 650
BstMBI GATC 2 cut(s) 55, 270
BstMCI CGRYCG 1 cut(s) 49
BstMWI GCNNNNNNNGC 5 cut(s) 24, 119, 141, 404, 517
BstSCI CCNGG 1 cut(s) 636
BstSLI GKGCMC 1 cut(s) 146
BstUI CGCG 4 cut(s) 113, 135, 377, 499
BstV1I GCAGC 3 cut(s) 285, 602, 682
BstV2I GAAGAC 1 cut(s) 569
Bsu15I ATCGAT 1 cut(s) 486
Bsu36I CCTNAGG 1 cut(s) 284
BsuRI GGCC 3 cut(s) 398, 543, 662
BsuTUI ATCGAT 1 cut(s) 486
BtsCI GGATG 3 cut(s) 255, 342, 609
BtsI GCAGTG 1 cut(s) 22
BtsIMutI CAGTG 1 cut(s) 22
BtuMI TCGCGA 1 cut(s) 113
Cac8I GCNNGC 2 cut(s) 501, 696
CfoI GCGC 3 cut(s) 295, 379, 409
Cfr13I GGNCC 4 cut(s) 304, 542, 634, 661
ClaI ATCGAT 1 cut(s) 486
CseI GACGC 1 cut(s) 383
Csp6I GTAC 2 cut(s) 229, 313
CviQI GTAC 2 cut(s) 229, 313
DdeI CTNAG 1 cut(s) 284
DinI GGCGCC 2 cut(s) 294, 408
DpnI GATC 2 cut(s) 57, 272
DpnII GATC 2 cut(s) 55, 270
DrdI GACNNNNNNGTC 1 cut(s) 664
DseDI GACNNNNNNGTC 1 cut(s) 664
Eam1104I CTCTTC 1 cut(s) 179
EarI CTCTTC 1 cut(s) 179
EciI GGCGGA 1 cut(s) 191
Eco47I GGWCC 2 cut(s) 304, 634
Eco57I CTGAAG 1 cut(s) 401
Eco72I CACGTG 1 cut(s) 310
Eco81I CCTNAGG 1 cut(s) 284
EcoNI CCTNNNNNAGG 1 cut(s) 287
EgeI GGCGCC 2 cut(s) 294, 408
EheI GGCGCC 2 cut(s) 294, 408
Esp3I CGTCTC 3 cut(s) 212, 335, 650
FaiI YATR 3 cut(s) 42, 428, 594
FaqI GGGAC 1 cut(s) 386
FauI CCCGC 2 cut(s) 192, 203
Fnu4HI GCNGC 6 cut(s) 136, 225, 296, 299, 616, 671
FokI GGATG 3 cut(s) 262, 349, 616
Fsp4HI GCNGC 6 cut(s) 136, 225, 296, 299, 616, 671
GlaI GCGC 3 cut(s) 294, 378, 408
GluI GCNGC 6 cut(s) 136, 225, 296, 299, 616, 671
GsaI CCCAGC 3 cut(s) 17, 548, 602
HaeII RGCGCY 2 cut(s) 296, 410
HaeIII GGCC 3 cut(s) 398, 543, 662
HapII CCGG 4 cut(s) 119, 399, 416, 637
HgaI GACGC 1 cut(s) 383
HhaI GCGC 3 cut(s) 295, 379, 409
Hin1I GRCGYC 3 cut(s) 5, 293, 407
Hin6I GCGC 3 cut(s) 293, 377, 407
HinP1I GCGC 3 cut(s) 293, 377, 407
HincII GTYRAC 1 cut(s) 463
HindII GTYRAC 1 cut(s) 463
HinfI GANTC 4 cut(s) 115, 130, 257, 476
HpaII CCGG 4 cut(s) 119, 399, 416, 637
HphI GGTGA 1 cut(s) 274
Hpy166II GTNNAC 4 cut(s) 241, 307, 313, 463
Hpy188I TCNGA 3 cut(s) 60, 82, 126
Hpy188III TCNNGA 5 cut(s) 53, 112, 277, 643, 676
Hpy8I GTNNAC 4 cut(s) 241, 307, 313, 463
Hpy99I CGWCG 4 cut(s) 10, 13, 113, 455
HpyAV CCTTC 4 cut(s) 229, 376, 413, 520
HpyCH4III ACNGT 2 cut(s) 317, 683
HpyCH4IV ACGT 1 cut(s) 309
HpyCH4V TGCA 4 cut(s) 72, 520, 618, 694
HpyF10VI GCNNNNNNNGC 5 cut(s) 24, 119, 141, 404, 517
HpyF3I CTNAG 1 cut(s) 284
HpySE526I ACGT 1 cut(s) 309
Hsp92I GRCGYC 3 cut(s) 5, 293, 407
HspAI GCGC 3 cut(s) 293, 377, 407
KasI GGCGCC 2 cut(s) 292, 406
Kzo9I GATC 2 cut(s) 55, 270
LmnI GCTCC 5 cut(s) 127, 189, 207, 213, 439
Lsp1109I GCAGC 3 cut(s) 285, 602, 682
MaeII ACGT 1 cut(s) 309
MaeIII GTNAC 1 cut(s) 262
MalI GATC 2 cut(s) 57, 272
MbiI CCGCTC 1 cut(s) 210
MboI GATC 2 cut(s) 55, 270
MboII GAAGA 5 cut(s) 69, 196, 361, 485, 574
MhlI GDGCHC 1 cut(s) 146
MluCI AATT 2 cut(s) 154, 367
Mly113I GGCGCC 2 cut(s) 293, 407
MseI TTAA 1 cut(s) 576
MspA1I CMGCKG 1 cut(s) 298
MspI CCGG 4 cut(s) 119, 399, 416, 637
MspR9I CCNGG 1 cut(s) 638
Mva1269I GAATGC 1 cut(s) 18
MvnI CGCG 4 cut(s) 113, 135, 377, 499
MwoI GCNNNNNNNGC 5 cut(s) 24, 119, 141, 404, 517
NarI GGCGCC 2 cut(s) 293, 407
NciI CCSGG 1 cut(s) 638
NdeII GATC 2 cut(s) 55, 270
NlaIV GGNNCC 4 cut(s) 34, 123, 294, 408
NmeAIII GCCGAG 1 cut(s) 70
NmuCI GTSAC 1 cut(s) 262
NruI TCGCGA 1 cut(s) 113
PctI GAATGC 1 cut(s) 18
PfeI GAWTC 4 cut(s) 115, 130, 257, 476
Pfl23II CGTACG 1 cut(s) 228
PkrI GCNGC 6 cut(s) 137, 226, 297, 300, 617, 672
PluTI GGCGCC 2 cut(s) 296, 410
PmaCI CACGTG 1 cut(s) 310
PmlI CACGTG 1 cut(s) 310
Ppu21I YACGTR 1 cut(s) 310
PspCI CACGTG 1 cut(s) 310
PspFI CCCAGC 3 cut(s) 13, 544, 598
PspLI CGTACG 1 cut(s) 228
PspN4I GGNNCC 4 cut(s) 34, 123, 294, 408
PspPI GGNCC 4 cut(s) 304, 542, 634, 661
RruI TCGCGA 1 cut(s) 113
RsaI GTAC 2 cut(s) 230, 314
RsaNI GTAC 2 cut(s) 229, 313
SaqAI TTAA 1 cut(s) 576
SatI GCNGC 6 cut(s) 136, 225, 296, 299, 616, 671
Sau3AI GATC 2 cut(s) 55, 270
Sau96I GGNCC 4 cut(s) 304, 542, 634, 661
ScrFI CCNGG 1 cut(s) 638
SduI GDGCHC 1 cut(s) 146
SetI ASST 6 cut(s) 240, 285, 312, 444, 550, 675
SfoI GGCGCC 2 cut(s) 294, 408
SinI GGWCC 2 cut(s) 304, 634
SmlI CTYRAG 1 cut(s) 674
SmoI CTYRAG 1 cut(s) 674
Sse9I AATT 2 cut(s) 154, 367
SsiI CCGC 9 cut(s) 27, 135, 170, 176, 199, 210, 224, 296, 331
SspDI GGCGCC 2 cut(s) 292, 406
StyD4I CCNGG 1 cut(s) 636
TaaI ACNGT 2 cut(s) 317, 683
TaiI ACGT 1 cut(s) 312
TaqI TCGA 1 cut(s) 486
TaqII GACCGA 1 cut(s) 35
TasI AATT 2 cut(s) 154, 367
TauI GCSGC 3 cut(s) 138, 227, 298
TfiI GAWTC 4 cut(s) 115, 130, 257, 476
Tru1I TTAA 1 cut(s) 576
Tru9I TTAA 1 cut(s) 576
TscAI CASTG 1 cut(s) 29
TseFI GTSAC 1 cut(s) 262
TseI GCWGC 3 cut(s) 298, 615, 670
Tsp45I GTSAC 1 cut(s) 262
TspGWI ACGGA 4 cut(s) 97, 281, 359, 469
TspRI CASTG 1 cut(s) 29
VpaK11BI GGWCC 2 cut(s) 304, 634
XagI CCTNNNNNAGG 1 cut(s) 287
XapI RAATTY 1 cut(s) 154
XcmI CCANNNNNNNNNTGG 1 cut(s) 314
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.