Rh1BG342400

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1B
OG0015947
Physical Location & Seq
Forward (+)
47569175 .. 47570321
1147 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1BG342400.1

Sequence Viewer

Length: 729 bp
ATGGCGTCGTCGCTGGGCATTCACTGCGGAGGCACCCGATATGTCGGTCGTCAAGATCAGAATAATCTGTGCAGTTCTTCTGACTACGCTCGGCGGGGTTCTTGTTCCGTCGCGATCCCGGCTCCGAGGAATCGCGGCAGGGGCACAATCGTAAATTCGTCTTGTGTGGCGGTGGCGGAAACGAAGAGGAGCGTGGGGCGGGAAAGGAGCGGGAGCGAGACGGCGGCGGCGGAGGCTTACGGGAAGGTGGACGAGTGGATGAGGGATTCGGTGACGGAGATCGTCAAGAACCTAAGGGAGGCGCCGCTGCTGGTCCACGTGTACGGTCGGGAAGAGAAGCGGAGGATGGAGACGGAGAAGAAAGTGGAGGAGGAGAATTGGGACGCGCTGAAGGGGAAGTGGGAGGCCGGAGAGGCGCCGTTGCCGGAAGGCGTTATATTCGTGGAGGAGCTGATGGACGACGGCGAAGTTGACGGCGGAGATAACGGCAAAGAAGATTCCGGTATCGATGGGATAACGCGGGCGTGGGGGTTGGTGGTGCAGGGCAAAGGGGAGGAGTGTGGGCCAGCTTGTTATTTGTTGAAGACGAGTGGAGTTAATGTCGGGTCGGGTTATGGGCTGGGGATGGGAATGGGCTGCACGCATTTTTGTTTGGTCCGGGTCAAGAGTTTTAGGGAGACGGCCCAGTCGCAGCTCAAGAACAGTTGGTTGTTGCAGGCACAGATGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

242

Amino Acids

26.27

Weight (kDa)

5.6

Isoelectric Point (pI)

45.04

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF7804 PF25089 80 - 156 3.5e-31 Domain of unknown function (DUF7804)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015947)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G56360 AT5G05250
fragaria_vesca FvH4_7g25910
malus_domestica MD01G1167600.v1.1 MD07G1233600.v1.1
prunus_persica Prupe.2G264000_v2.0.a1
pyrus_communis pycom01g18060 pycom07g21140
rosa_chinensis RchiOBHm_Chr1g0372231
rosa_rugosa Rorug01G0370600
rosa_samantha Rh1AG378900 Rh1BG342400 Rh1CG356000 Rh1DG373600
rosa_wichuraiana Rw1G033340

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 685
AccB1I GGYRCC 3 cut(s) 32, 301, 415
AccBSI CCGCTC 1 cut(s) 210
AccII CGCG 4 cut(s) 113, 135, 386, 520
AclWI GGATC 1 cut(s) 109
AcsI RAATTY 1 cut(s) 154
AcuI CTGAAG 1 cut(s) 410
AcvI CACGTG 1 cut(s) 319
AcyI GRCGYC 3 cut(s) 5, 302, 416
AfaI GTAC 1 cut(s) 323
AfiI CCNNNNNNNGG 1 cut(s) 298
AflIII ACRYGT 1 cut(s) 318
AgsI TTSAA 1 cut(s) 583
AluBI AGCT 3 cut(s) 451, 569, 694
AluI AGCT 3 cut(s) 451, 569, 694
Alw26I GTCTC 3 cut(s) 212, 344, 671
AlwI GGATC 1 cut(s) 109
AoxI GGCC 3 cut(s) 405, 563, 681
ApeKI GCWGC 3 cut(s) 307, 636, 691
ApoI RAATTY 1 cut(s) 154
AspLEI GCGC 3 cut(s) 304, 388, 418
AspS9I GGNCC 4 cut(s) 313, 563, 655, 682
AsuC2I CCSGG 2 cut(s) 119, 659
AsuHPI GGTGA 1 cut(s) 283
AvaII GGWCC 2 cut(s) 313, 655
AxyI CCTNAGG 1 cut(s) 293
BaeGI GKGCMC 1 cut(s) 146
BanI GGYRCC 3 cut(s) 32, 301, 415
BbrPI CACGTG 1 cut(s) 319
BbsI GAAGAC 1 cut(s) 590
BbvI GCAGC 3 cut(s) 294, 623, 703
BccI CCATC 4 cut(s) 340, 448, 503, 619
BceAI ACGGC 6 cut(s) 237, 403, 478, 490, 502, 696
BcnI CCSGG 2 cut(s) 119, 659
BcoDI GTCTC 3 cut(s) 212, 344, 671
BfoI RGCGCY 2 cut(s) 305, 419
BglI GCCNNNNNGGC 1 cut(s) 413
BisI GCNGC 7 cut(s) 136, 225, 228, 305, 308, 637, 692
BlsI GCNGC 7 cut(s) 137, 226, 229, 306, 309, 638, 693
Bme1390I CCNGG 2 cut(s) 119, 659
Bme18I GGWCC 2 cut(s) 313, 655
BmgT120I GGNCC 4 cut(s) 313, 563, 655, 682
BmiI GGNNCC 4 cut(s) 34, 123, 303, 417
BmrFI CCNGG 2 cut(s) 119, 659
BmrI ACTGGG 1 cut(s) 679
BmuI ACTGGG 1 cut(s) 679
BpiI GAAGAC 1 cut(s) 590
BpuEI CTTGAG 1 cut(s) 680
BpuMI CCSGG 2 cut(s) 119, 659
Bsa29I ATCGAT 1 cut(s) 507
BsaAI YACGTR 1 cut(s) 319
BsaHI GRCGYC 3 cut(s) 5, 302, 416
BsaJI CCNNGG 1 cut(s) 125
BsaWI WCCGGW 1 cut(s) 500
BsaXI ACNNNNNCTCC 2 cut(s) 585, 615
Bsc4I CCNNNNNNNGG 1 cut(s) 298
Bse1I ACTGG 1 cut(s) 685
Bse21I CCTNAGG 1 cut(s) 293
BseCI ATCGAT 1 cut(s) 507
BseDI CCNNGG 1 cut(s) 125
BseGI GGATG 3 cut(s) 264, 351, 630
BseLI CCNNNNNNNGG 1 cut(s) 298
BseNI ACTGG 1 cut(s) 685
BseRI GAGGAG 5 cut(s) 202, 383, 386, 461, 569
BseSI GKGCMC 1 cut(s) 146
BseXI GCAGC 3 cut(s) 294, 623, 703
BseYI CCCAGC 2 cut(s) 13, 619
BsgI GTGCAG 3 cut(s) 91, 560, 622
Bsh1236I CGCG 4 cut(s) 113, 135, 386, 520
Bsh1285I CGRYCG 2 cut(s) 49, 328
BshFI GGCC 3 cut(s) 407, 565, 683
BshNI GGYRCC 3 cut(s) 32, 301, 415
BshVI ATCGAT 1 cut(s) 507
BsiEI CGRYCG 2 cut(s) 49, 328
BsiSI CCGG 5 cut(s) 119, 408, 425, 501, 658
BslFI GGGAC 1 cut(s) 395
BslI CCNNNNNNNGG 1 cut(s) 298
BsmAI GTCTC 3 cut(s) 212, 344, 671
BsmBI CGTCTC 3 cut(s) 212, 344, 671
BsmFI GGGAC 1 cut(s) 395
BsmI GAATGC 1 cut(s) 18
BsnI GGCC 3 cut(s) 407, 565, 683
Bsp1286I GDGCHC 1 cut(s) 146
Bsp143I GATC 3 cut(s) 55, 114, 279
Bsp68I TCGCGA 1 cut(s) 113
BspANI GGCC 3 cut(s) 407, 565, 683
BspDI ATCGAT 1 cut(s) 507
BspFNI CGCG 4 cut(s) 113, 135, 386, 520
BspLI GGNNCC 4 cut(s) 34, 123, 303, 417
BspPI GGATC 1 cut(s) 109
BspT107I GGYRCC 3 cut(s) 32, 301, 415
BsrBI CCGCTC 1 cut(s) 210
BsrI ACTGG 1 cut(s) 685
BssECI CCNNGG 1 cut(s) 125
BssMI GATC 3 cut(s) 55, 114, 279
BssNI GRCGYC 3 cut(s) 5, 302, 416
Bst4CI ACNGT 2 cut(s) 326, 704
Bst6I CTCTTC 2 cut(s) 179, 327
BstACI GRCGYC 3 cut(s) 5, 302, 416
BstAPI GCANNNNNTGC 1 cut(s) 24
BstBAI YACGTR 1 cut(s) 319
BstC8I GCNNGC 4 cut(s) 522, 567, 641, 717
BstDEI CTNAG 1 cut(s) 293
BstENI CCTNNNNNAGG 1 cut(s) 296
BstF5I GGATG 3 cut(s) 264, 351, 630
BstFNI CGCG 4 cut(s) 113, 135, 386, 520
BstH2I RGCGCY 2 cut(s) 305, 419
BstHHI GCGC 3 cut(s) 304, 388, 418
BstKTI GATC 3 cut(s) 58, 117, 282
BstMAI GTCTC 3 cut(s) 212, 344, 671
BstMBI GATC 3 cut(s) 55, 114, 279
BstMCI CGRYCG 2 cut(s) 49, 328
BstMWI GCNNNNNNNGC 5 cut(s) 24, 119, 141, 233, 413
BstSCI CCNGG 2 cut(s) 117, 657
BstSLI GKGCMC 1 cut(s) 146
BstUI CGCG 4 cut(s) 113, 135, 386, 520
BstV1I GCAGC 3 cut(s) 294, 623, 703
BstV2I GAAGAC 1 cut(s) 590
Bsu15I ATCGAT 1 cut(s) 507
Bsu36I CCTNAGG 1 cut(s) 293
BsuRI GGCC 3 cut(s) 407, 565, 683
BsuTUI ATCGAT 1 cut(s) 507
BtsCI GGATG 3 cut(s) 264, 351, 630
BtsI GCAGTG 1 cut(s) 22
BtsIMutI CAGTG 1 cut(s) 22
BtuMI TCGCGA 1 cut(s) 113
Cac8I GCNNGC 4 cut(s) 522, 567, 641, 717
CfoI GCGC 3 cut(s) 304, 388, 418
Cfr13I GGNCC 4 cut(s) 313, 563, 655, 682
ClaI ATCGAT 1 cut(s) 507
CseI GACGC 1 cut(s) 392
Csp6I GTAC 1 cut(s) 322
CviQI GTAC 1 cut(s) 322
DdeI CTNAG 1 cut(s) 293
DinI GGCGCC 2 cut(s) 303, 417
DpnI GATC 3 cut(s) 57, 116, 281
DpnII GATC 3 cut(s) 55, 114, 279
DrdI GACNNNNNNGTC 1 cut(s) 685
DseDI GACNNNNNNGTC 1 cut(s) 685
Eam1104I CTCTTC 2 cut(s) 179, 327
EarI CTCTTC 2 cut(s) 179, 327
EciI GGCGGA 3 cut(s) 191, 245, 492
Eco47I GGWCC 2 cut(s) 313, 655
Eco57I CTGAAG 1 cut(s) 410
Eco72I CACGTG 1 cut(s) 319
Eco81I CCTNAGG 1 cut(s) 293
EcoNI CCTNNNNNAGG 1 cut(s) 296
EgeI GGCGCC 2 cut(s) 303, 417
EheI GGCGCC 2 cut(s) 303, 417
Esp3I CGTCTC 3 cut(s) 212, 344, 671
FaiI YATR 3 cut(s) 42, 437, 615
FaqI GGGAC 1 cut(s) 395
FauI CCCGC 4 cut(s) 87, 192, 203, 513
Fnu4HI GCNGC 7 cut(s) 136, 225, 228, 305, 308, 637, 692
FokI GGATG 3 cut(s) 271, 358, 637
Fsp4HI GCNGC 7 cut(s) 136, 225, 228, 305, 308, 637, 692
GlaI GCGC 3 cut(s) 303, 387, 417
GluI GCNGC 7 cut(s) 136, 225, 228, 305, 308, 637, 692
GsaI CCCAGC 2 cut(s) 17, 623
HaeII RGCGCY 2 cut(s) 305, 419
HaeIII GGCC 3 cut(s) 407, 565, 683
HapII CCGG 5 cut(s) 119, 408, 425, 501, 658
HgaI GACGC 1 cut(s) 392
HhaI GCGC 3 cut(s) 304, 388, 418
Hin1I GRCGYC 3 cut(s) 5, 302, 416
Hin6I GCGC 3 cut(s) 302, 386, 416
HinP1I GCGC 3 cut(s) 302, 386, 416
HincII GTYRAC 1 cut(s) 472
HindII GTYRAC 1 cut(s) 472
HinfI GANTC 3 cut(s) 130, 266, 497
HpaII CCGG 5 cut(s) 119, 408, 425, 501, 658
HphI GGTGA 1 cut(s) 283
Hpy166II GTNNAC 4 cut(s) 250, 316, 322, 472
Hpy188I TCNGA 3 cut(s) 60, 82, 126
Hpy188III TCNNGA 6 cut(s) 53, 112, 286, 329, 664, 697
Hpy8I GTNNAC 4 cut(s) 250, 316, 322, 472
Hpy99I CGWCG 4 cut(s) 10, 13, 113, 464
HpyAV CCTTC 3 cut(s) 238, 385, 422
HpyCH4III ACNGT 2 cut(s) 326, 704
HpyCH4IV ACGT 1 cut(s) 318
HpyCH4V TGCA 4 cut(s) 72, 541, 639, 715
HpyF10VI GCNNNNNNNGC 5 cut(s) 24, 119, 141, 233, 413
HpyF3I CTNAG 1 cut(s) 293
HpySE526I ACGT 1 cut(s) 318
Hsp92I GRCGYC 3 cut(s) 5, 302, 416
HspAI GCGC 3 cut(s) 302, 386, 416
KasI GGCGCC 2 cut(s) 301, 415
Kzo9I GATC 3 cut(s) 55, 114, 279
LmnI GCTCC 5 cut(s) 127, 189, 207, 213, 448
Lsp1109I GCAGC 3 cut(s) 294, 623, 703
MaeII ACGT 1 cut(s) 318
MaeIII GTNAC 1 cut(s) 271
MalI GATC 3 cut(s) 57, 116, 281
MbiI CCGCTC 1 cut(s) 210
MboI GATC 3 cut(s) 55, 114, 279
MboII GAAGA 6 cut(s) 69, 196, 344, 370, 506, 595
MhlI GDGCHC 1 cut(s) 146
MluCI AATT 2 cut(s) 154, 376
Mly113I GGCGCC 2 cut(s) 302, 416
MseI TTAA 1 cut(s) 597
MspA1I CMGCKG 1 cut(s) 307
MspI CCGG 5 cut(s) 119, 408, 425, 501, 658
MspR9I CCNGG 2 cut(s) 119, 659
Mva1269I GAATGC 1 cut(s) 18
MvnI CGCG 4 cut(s) 113, 135, 386, 520
MwoI GCNNNNNNNGC 5 cut(s) 24, 119, 141, 233, 413
NarI GGCGCC 2 cut(s) 302, 416
NciI CCSGG 2 cut(s) 119, 659
NdeII GATC 3 cut(s) 55, 114, 279
NlaIV GGNNCC 4 cut(s) 34, 123, 303, 417
NmeAIII GCCGAG 1 cut(s) 70
NmuCI GTSAC 1 cut(s) 271
NruI TCGCGA 1 cut(s) 113
PctI GAATGC 1 cut(s) 18
PfeI GAWTC 3 cut(s) 130, 266, 497
PkrI GCNGC 7 cut(s) 137, 226, 229, 306, 309, 638, 693
PluTI GGCGCC 2 cut(s) 305, 419
PmaCI CACGTG 1 cut(s) 319
PmlI CACGTG 1 cut(s) 319
Ppu21I YACGTR 1 cut(s) 319
PspCI CACGTG 1 cut(s) 319
PspFI CCCAGC 2 cut(s) 13, 619
PspN4I GGNNCC 4 cut(s) 34, 123, 303, 417
PspPI GGNCC 4 cut(s) 313, 563, 655, 682
RruI TCGCGA 1 cut(s) 113
RsaI GTAC 1 cut(s) 323
RsaNI GTAC 1 cut(s) 322
SaqAI TTAA 1 cut(s) 597
SatI GCNGC 7 cut(s) 136, 225, 228, 305, 308, 637, 692
Sau3AI GATC 3 cut(s) 55, 114, 279
Sau96I GGNCC 4 cut(s) 313, 563, 655, 682
ScrFI CCNGG 2 cut(s) 119, 659
SduI GDGCHC 1 cut(s) 146
SetI ASST 6 cut(s) 249, 294, 321, 453, 571, 696
SfoI GGCGCC 2 cut(s) 303, 417
SinI GGWCC 2 cut(s) 313, 655
SmlI CTYRAG 1 cut(s) 695
SmoI CTYRAG 1 cut(s) 695
Sse9I AATT 2 cut(s) 154, 376
SspDI GGCGCC 2 cut(s) 301, 415
StyD4I CCNGG 2 cut(s) 117, 657
TaaI ACNGT 2 cut(s) 326, 704
TaiI ACGT 1 cut(s) 321
TaqI TCGA 1 cut(s) 507
TaqII GACCGA 1 cut(s) 35
TasI AATT 2 cut(s) 154, 376
TauI GCSGC 4 cut(s) 138, 227, 230, 307
TfiI GAWTC 3 cut(s) 130, 266, 497
Tru1I TTAA 1 cut(s) 597
Tru9I TTAA 1 cut(s) 597
TscAI CASTG 1 cut(s) 29
TseFI GTSAC 1 cut(s) 271
TseI GCWGC 3 cut(s) 307, 636, 691
Tsp45I GTSAC 1 cut(s) 271
TspGWI ACGGA 3 cut(s) 97, 290, 368
TspRI CASTG 1 cut(s) 29
VpaK11BI GGWCC 2 cut(s) 313, 655
XagI CCTNNNNNAGG 1 cut(s) 296
XapI RAATTY 1 cut(s) 154
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.