AT3G56590

Zinc finger (C3HC4-type RING finger) family protein

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
Physical Location & Seq
Forward (+)
20964643 .. 20968195
3553 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G56590.2

Sequence Viewer

Length: 1434 bp
ATGGGGAAGAATACCGTCGAGGAGCAGAATCTCCCTGTGAGCGACGGAGCTGCTTCGGCTAGGAATAACGGAGGTGGAGGAATAAGCACATGTTGTTGCTGCGATTGGATCTCTAGCTACTTTAGTCTCAGATGCGTTTTGATTCTTGCTTTTTCTGCTGCTGTGTTTCTCTCCGCCTTGTTTTGGTTACCTCCATTCCTCGGATTTGCAGATCCAGGGGATCTAGATCTCGATCCAAGGTTTAAAGATCACAGAATAGTGGCGAGTTTTGATGTTGGAAAACCAATTTCGTTCATGGAAGACAATTTGATGCAGCTTGAGAATGATATCACTGATGAAATAAGCTTTCCCATGACCAAAGTTGTGGTATTAGCGCTTGAACGCTTGGGTGATCTTAACAGAACAATGGTTATTTTTGCCATTGATCCTGAGAAGGAGAATTCTAAGATACCTGCCGAAATAGAGAGTCTGATCAAGGCAGCTTTTGAAACTCTGGTCCAAAAGCAGTTGTCTTTCCGTTTGACTGAATCCTTGTTTGGGGAACCATTCTTTTTCGAGGTGCTAAAATTCCCTGGAGGAATCACTGTGATCCCTCCCCAGCCTATATTTCCCCTGCAGAAGGCCCAACTTCTTTTCAACTTCACATTAAACTTTTCGATTTACCAAATTCAATCAAACTTTGAGGAACTCGCTAGCCAGCTGAAGAAGGGCATAAATCTGGCTTCCTATGAGAACTTGTACATAACCTTGTCAAATTCCAGAGGTTCAACAGTGGCGCCTCCTACTATAGTTCATTCTTCTGTTCTACTCACATTCGGTTCATCTTCGAGGTTGAAGCAACTTGCTCAAACTATCACTAGCTCCCATTCCAAAAATCTCGGCCTAAACCATACCGTATTTGGTAAGGTTAAGCAAGTCCGTCTTTCCTCAATCTTGCCACATTCACCTGCCACATCATCAACCCCTTCCCCTTCTCCTCAACCTGAAACCCACCAATACCCCCATCATCATCCTCATCATCATCACCACCATCATGAACTTGCTCCAGAACCTTCACTCTCACCTCCAACTAAAGGCTTTGCACCTGCATCAGCGCCAACCAAACACTCACCTTTACCCCCGAGAAACCCGCCTTGCCCTTACGAGCAGAGGAGACCAAAAGGAAACAGTGCTCTAAACCATCATACTGCACCACCAACGCCTGCACCACACCGGTCTCAGCCACACCCACCAGCACCAAACCCAGCCCCGCCACGTCATCATGCCATACCAGTATCTAGCCCACTTCCCCACGTTGTATTTGCTCATATCCCACCTCCATCAAAAAGCAGCCCAGAATCAGAACCTACAGGCGAAAAATCTCCCTCACCTGCTCCAACCCCATGTAAGTCTTCTTCTCTAACTCAGTTCTCAAGATCTGCATCACTGAACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

477

Amino Acids

52.07

Weight (kDa)

7.77

Isoelectric Point (pI)

56.17

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF7036 PF23041 89 - 180 1.8e-22 Domain of unknown function (DUF7036)
DUF7036 PF23041 213 - 301 4.9e-23 Domain of unknown function (DUF7036)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 3 cut(s) 955, 1093, 1378
Acc36I ACCTGC 4 cut(s) 460, 955, 1093, 1378
AccB1I GGYRCC 1 cut(s) 775
AciI CCGC 3 cut(s) 174, 1130, 1250
AclWI GGATC 6 cut(s) 116, 206, 227, 228, 419, 583
AcsI RAATTY 4 cut(s) 439, 566, 666, 754
AcuI CTGAAG 1 cut(s) 722
AcyI GRCGYC 1 cut(s) 776
AfaI GTAC 1 cut(s) 740
AfeI AGCGCT 1 cut(s) 375
AfiI CCNNNNNNNGG 5 cut(s) 183, 200, 537, 619, 1073
AflIII ACRYGT 1 cut(s) 89
AgeI ACCGGT 1 cut(s) 1212
AgsI TTSAA 6 cut(s) 380, 488, 637, 671, 768, 835
AjiI CACGTC 1 cut(s) 1256
AjnI CCWGG 2 cut(s) 214, 571
AjuI GAANNNNNNNTTGG 2 cut(s) 519, 551
AluBI AGCT 7 cut(s) 50, 117, 316, 345, 482, 700, 861
AluI AGCT 7 cut(s) 50, 117, 316, 345, 482, 700, 861
Alw21I GWGCWC 1 cut(s) 1174
Alw26I GTCTC 3 cut(s) 131, 1147, 1221
AlwI GGATC 6 cut(s) 116, 206, 227, 228, 419, 583
Ama87I CYCGRG 1 cut(s) 1120
Aor51HI AGCGCT 1 cut(s) 375
AoxI GGCC 2 cut(s) 621, 880
ApeKI GCWGC 6 cut(s) 50, 99, 158, 313, 479, 1329
ApoI RAATTY 4 cut(s) 439, 566, 666, 754
AsiGI ACCGGT 1 cut(s) 1212
AspLEI GCGC 3 cut(s) 376, 778, 1096
AspS9I GGNCC 2 cut(s) 496, 622
AsuHPI GGTGA 6 cut(s) 401, 936, 1016, 1053, 1101, 1359
AsuNHI GCTAGC 1 cut(s) 692
AvaI CYCGRG 1 cut(s) 1120
AvaII GGWCC 1 cut(s) 496
BanI GGYRCC 1 cut(s) 775
BarI GAAGNNNNNNTAC 2 cut(s) 1378, 1410
BbsI GAAGAC 2 cut(s) 306, 1383
Bbv12I GWGCWC 1 cut(s) 1174
BbvI GCAGC 6 cut(s) 37, 86, 145, 325, 491, 1341
BccI CCATC 4 cut(s) 1011, 1038, 1188, 1327
BcgI CGANNNNNNTGC 2 cut(s) 32, 66
BciT130I CCWGG 2 cut(s) 216, 573
BclI TGATCA 1 cut(s) 471
BcoDI GTCTC 3 cut(s) 131, 1147, 1221
BfaI CTAG 6 cut(s) 60, 114, 224, 693, 858, 1278
BfmI CTRYAG 3 cut(s) 614, 786, 1347
BfoI RGCGCY 3 cut(s) 377, 779, 1097
BfuAI ACCTGC 4 cut(s) 460, 955, 1093, 1378
BglII AGATCT 2 cut(s) 226, 1415
BisI GCNGC 6 cut(s) 51, 100, 159, 314, 480, 1330
BlsI GCNGC 6 cut(s) 52, 101, 160, 315, 481, 1331
Bme1390I CCNGG 2 cut(s) 216, 573
Bme18I GGWCC 1 cut(s) 496
BmeT110I CYCGRG 1 cut(s) 1120
BmgBI CACGTC 1 cut(s) 1256
BmgT120I GGNCC 2 cut(s) 496, 622
BmiI GGNNCC 2 cut(s) 543, 777
BmrFI CCNGG 2 cut(s) 216, 573
BmsI GCATC 4 cut(s) 122, 300, 1097, 1430
BmtI GCTAGC 1 cut(s) 696
BpiI GAAGAC 2 cut(s) 306, 1383
BpmI CTGGAG 2 cut(s) 594, 1029
BpuEI CTTGAG 2 cut(s) 338, 1396
BsaBI GATNNNNATC 3 cut(s) 225, 231, 1420
BsaHI GRCGYC 1 cut(s) 776
BsaI GGTCTC 2 cut(s) 1147, 1221
BsaJI CCNNGG 4 cut(s) 199, 215, 236, 571
BsaWI WCCGGW 1 cut(s) 1212
Bsc4I CCNNNNNNNGG 5 cut(s) 183, 200, 537, 619, 1073
Bse118I RCCGGY 1 cut(s) 1212
Bse1I ACTGG 1 cut(s) 1271
Bse8I GATNNNNATC 3 cut(s) 225, 231, 1420
BseBI CCWGG 2 cut(s) 216, 573
BseDI CCNNGG 4 cut(s) 199, 215, 236, 571
BseGI GGATG 1 cut(s) 1009
BseJI GATNNNNATC 3 cut(s) 225, 231, 1420
BseLI CCNNNNNNNGG 5 cut(s) 183, 200, 537, 619, 1073
BseMII CTCAG 4 cut(s) 142, 420, 1232, 1418
BseNI ACTGG 1 cut(s) 1271
BseRI GAGGAG 3 cut(s) 35, 966, 1165
BseXI GCAGC 6 cut(s) 37, 86, 145, 325, 491, 1341
BseYI CCCAGC 2 cut(s) 597, 1243
BsgI GTGCAG 2 cut(s) 1173, 1188
BshFI GGCC 2 cut(s) 623, 882
BshNI GGYRCC 1 cut(s) 775
BshTI ACCGGT 1 cut(s) 1212
BsiHKAI GWGCWC 1 cut(s) 1174
BsiHKCI CYCGRG 1 cut(s) 1120
BsiSI CCGG 1 cut(s) 1213
BslI CCNNNNNNNGG 5 cut(s) 183, 200, 537, 619, 1073
BsmAI GTCTC 3 cut(s) 131, 1147, 1221
BsnI GGCC 2 cut(s) 623, 882
Bso31I GGTCTC 2 cut(s) 1147, 1221
BsoBI CYCGRG 1 cut(s) 1120
Bsp1286I GDGCHC 1 cut(s) 1174
Bsp1407I TGTACA 1 cut(s) 738
BspACI CCGC 3 cut(s) 174, 1130, 1250
BspANI GGCC 2 cut(s) 623, 882
BspCNI CTCAG 4 cut(s) 141, 421, 1231, 1417
BspHI TCATGA 1 cut(s) 1033
BspLI GGNNCC 2 cut(s) 543, 777
BspMAI CTGCAG 1 cut(s) 618
BspMI ACCTGC 4 cut(s) 460, 955, 1093, 1378
BspOI GCTAGC 1 cut(s) 696
BspPI GGATC 6 cut(s) 116, 206, 227, 228, 419, 583
BspT107I GGYRCC 1 cut(s) 775
BspTNI GGTCTC 2 cut(s) 1147, 1221
BsrFI RCCGGY 1 cut(s) 1212
BsrGI TGTACA 1 cut(s) 738
BsrI ACTGG 1 cut(s) 1271
BssAI RCCGGY 1 cut(s) 1212
BssECI CCNNGG 4 cut(s) 199, 215, 236, 571
BssNI GRCGYC 1 cut(s) 776
BssT1I CCWWGG 1 cut(s) 236
Bst2UI CCWGG 2 cut(s) 216, 573
Bst4CI ACNGT 5 cut(s) 16, 586, 772, 895, 1169
BstACI GRCGYC 1 cut(s) 776
BstAUI TGTACA 1 cut(s) 738
BstC8I GCNNGC 3 cut(s) 694, 698, 1203
BstDEI CTNAG 5 cut(s) 128, 429, 444, 1218, 1404
BstEII GGTNACC 1 cut(s) 186
BstENI CCTNNNNNAGG 1 cut(s) 617
BstF5I GGATG 1 cut(s) 1009
BstH2I RGCGCY 3 cut(s) 377, 779, 1097
BstHHI GCGC 3 cut(s) 376, 778, 1096
BstMAI GTCTC 3 cut(s) 131, 1147, 1221
BstMWI GCNNNNNNNGC 2 cut(s) 56, 155
BstNI CCWGG 2 cut(s) 216, 573
BstNSI RCATGY 1 cut(s) 93
BstPI GGTNACC 1 cut(s) 186
BstSCI CCNGG 2 cut(s) 214, 571
BstSFI CTRYAG 3 cut(s) 614, 786, 1347
BstV1I GCAGC 6 cut(s) 37, 86, 145, 325, 491, 1341
BstV2I GAAGAC 2 cut(s) 306, 1383
BstX2I RGATCY 5 cut(s) 108, 211, 220, 226, 1415
BstXI CCANNNNNNTGG 1 cut(s) 364
BstYI RGATCY 5 cut(s) 108, 211, 220, 226, 1415
BsuRI GGCC 2 cut(s) 623, 882
BtrI CACGTC 1 cut(s) 1256
BtsCI GGATG 1 cut(s) 1009
BtsIMutI CAGTG 5 cut(s) 330, 582, 777, 1174, 1424
BveI ACCTGC 4 cut(s) 460, 955, 1093, 1378
Cac8I GCNNGC 3 cut(s) 694, 698, 1203
CciI TCATGA 1 cut(s) 1033
CfoI GCGC 3 cut(s) 376, 778, 1096
Cfr10I RCCGGY 1 cut(s) 1212
Cfr13I GGNCC 2 cut(s) 496, 622
Csp6I GTAC 1 cut(s) 739
CspAI ACCGGT 1 cut(s) 1212
CviAII CATG 6 cut(s) 90, 295, 352, 1034, 1262, 1383
CviQI GTAC 1 cut(s) 739
DdeI CTNAG 5 cut(s) 128, 429, 444, 1218, 1404
DinI GGCGCC 1 cut(s) 777
DraI TTTAAA 1 cut(s) 244
EciI GGCGGA 1 cut(s) 163
Eco130I CCWWGG 1 cut(s) 236
Eco31I GGTCTC 2 cut(s) 1147, 1221
Eco32I GATATC 1 cut(s) 328
Eco47I GGWCC 1 cut(s) 496
Eco47III AGCGCT 1 cut(s) 375
Eco57I CTGAAG 1 cut(s) 722
Eco88I CYCGRG 1 cut(s) 1120
Eco91I GGTNACC 1 cut(s) 186
EcoNI CCTNNNNNAGG 1 cut(s) 617
EcoO65I GGTNACC 1 cut(s) 186
EcoRI GAATTC 1 cut(s) 439
EcoRII CCWGG 2 cut(s) 214, 571
EcoRV GATATC 1 cut(s) 328
EcoT14I CCWWGG 1 cut(s) 236
EgeI GGCGCC 1 cut(s) 777
EheI GGCGCC 1 cut(s) 777
ErhI CCWWGG 1 cut(s) 236
FaeI CATG 6 cut(s) 93, 298, 355, 1037, 1265, 1386
FalI AAGNNNNNCTT 2 cut(s) 906, 938
FatI CATG 6 cut(s) 89, 294, 351, 1033, 1261, 1382
FauI CCCGC 2 cut(s) 1137, 1257
FbaI TGATCA 1 cut(s) 471
Fnu4HI GCNGC 6 cut(s) 51, 100, 159, 314, 480, 1330
FokI GGATG 1 cut(s) 996
Fsp4HI GCNGC 6 cut(s) 51, 100, 159, 314, 480, 1330
FspBI CTAG 6 cut(s) 60, 114, 224, 693, 858, 1278
GlaI GCGC 3 cut(s) 375, 777, 1095
GluI GCNGC 6 cut(s) 51, 100, 159, 314, 480, 1330
GsaI CCCAGC 2 cut(s) 601, 1247
GsuI CTGGAG 2 cut(s) 594, 1029
HaeII RGCGCY 3 cut(s) 377, 779, 1097
HaeIII GGCC 2 cut(s) 623, 882
HapII CCGG 1 cut(s) 1213
HhaI GCGC 3 cut(s) 376, 778, 1096
Hin1I GRCGYC 1 cut(s) 776
Hin1II CATG 6 cut(s) 93, 298, 355, 1037, 1265, 1386
Hin6I GCGC 3 cut(s) 374, 776, 1094
HinP1I GCGC 3 cut(s) 374, 776, 1094
HindIII AAGCTT 1 cut(s) 343
HinfI GANTC 6 cut(s) 28, 142, 466, 527, 579, 1337
HpaII CCGG 1 cut(s) 1213
HphI GGTGA 6 cut(s) 401, 936, 1016, 1053, 1101, 1359
Hpy188I TCNGA 4 cut(s) 131, 203, 471, 1342
Hpy188III TCNNGA 7 cut(s) 224, 230, 428, 759, 1034, 1046, 1413
Hpy99I CGWCG 2 cut(s) 20, 47
HpyAV CCTTC 6 cut(s) 427, 613, 700, 975, 981, 1062
HpyCH4III ACNGT 5 cut(s) 16, 586, 772, 895, 1169
HpyCH4IV ACGT 2 cut(s) 1255, 1293
HpyCH4V TGCA 8 cut(s) 209, 313, 616, 1082, 1088, 1190, 1205, 1421
HpyF10VI GCNNNNNNNGC 2 cut(s) 56, 155
HpyF3I CTNAG 5 cut(s) 128, 429, 444, 1218, 1404
HpySE526I ACGT 2 cut(s) 1255, 1293
Hsp92I GRCGYC 1 cut(s) 776
Hsp92II CATG 6 cut(s) 93, 298, 355, 1037, 1265, 1386
HspAI GCGC 3 cut(s) 374, 776, 1094
KasI GGCGCC 1 cut(s) 775
Ksp22I TGATCA 1 cut(s) 471
LmnI GCTCC 5 cut(s) 22, 47, 866, 1048, 1378
Lsp1109I GCAGC 6 cut(s) 37, 86, 145, 325, 491, 1341
LweI GCATC 4 cut(s) 122, 300, 1097, 1430
MaeI CTAG 6 cut(s) 60, 114, 224, 693, 858, 1278
MaeII ACGT 2 cut(s) 1255, 1293
MaeIII GTNAC 1 cut(s) 186
MboII GAAGA 7 cut(s) 19, 311, 715, 789, 816, 1383, 1386
MflI RGATCY 5 cut(s) 108, 211, 220, 226, 1415
MhlI GDGCHC 1 cut(s) 1174
MluCI AATT 6 cut(s) 285, 304, 439, 566, 666, 754
Mly113I GGCGCC 1 cut(s) 776
MlyI GAGTC 1 cut(s) 475
MmeI TCCRAC 3 cut(s) 256, 1091, 1400
MseI TTAA 4 cut(s) 243, 396, 647, 909
MslI CAYNNNNRTG 1 cut(s) 1032
MspA1I CMGCKG 1 cut(s) 700
MspI CCGG 1 cut(s) 1213
MspR9I CCNGG 2 cut(s) 216, 573
MvaI CCWGG 2 cut(s) 216, 573
MwoI GCNNNNNNNGC 2 cut(s) 56, 155
NarI GGCGCC 1 cut(s) 776
NheI GCTAGC 1 cut(s) 692
NlaIII CATG 6 cut(s) 93, 298, 355, 1037, 1265, 1386
NlaIV GGNNCC 2 cut(s) 543, 777
NmeAIII GCCGAG 1 cut(s) 858
NspI RCATGY 1 cut(s) 93
PagI TCATGA 1 cut(s) 1033
PaqCI CACCTGC 3 cut(s) 955, 1093, 1378
PciI ACATGT 1 cut(s) 89
PfeI GAWTC 5 cut(s) 28, 142, 527, 579, 1337
PinAI ACCGGT 1 cut(s) 1212
PkrI GCNGC 6 cut(s) 52, 101, 160, 315, 481, 1331
PleI GAGTC 1 cut(s) 474
PluTI GGCGCC 1 cut(s) 779
PpsI GAGTC 1 cut(s) 474
PscI ACATGT 1 cut(s) 89
Psp6I CCWGG 2 cut(s) 214, 571
PspEI GGTNACC 1 cut(s) 186
PspFI CCCAGC 2 cut(s) 597, 1243
PspGI CCWGG 2 cut(s) 214, 571
PspN4I GGNNCC 2 cut(s) 543, 777
PspPI GGNCC 2 cut(s) 496, 622
PstI CTGCAG 1 cut(s) 618
PsuI RGATCY 5 cut(s) 108, 211, 220, 226, 1415
PvuII CAGCTG 1 cut(s) 700
RsaI GTAC 1 cut(s) 740
RsaNI GTAC 1 cut(s) 739
RseI CAYNNNNRTG 1 cut(s) 1032
SaqAI TTAA 4 cut(s) 243, 396, 647, 909
SatI GCNGC 6 cut(s) 51, 100, 159, 314, 480, 1330
Sau96I GGNCC 2 cut(s) 496, 622
SchI GAGTC 1 cut(s) 475
ScrFI CCNGG 2 cut(s) 216, 573
SduI GDGCHC 1 cut(s) 1174
SfaNI GCATC 4 cut(s) 122, 300, 1097, 1430
SfcI CTRYAG 3 cut(s) 614, 786, 1347
SfoI GGCGCC 1 cut(s) 777
SinI GGWCC 1 cut(s) 496
SmiMI CAYNNNNRTG 1 cut(s) 1032
SmlI CTYRAG 2 cut(s) 317, 1411
SmoI CTYRAG 2 cut(s) 317, 1411
Sse9I AATT 6 cut(s) 285, 304, 439, 566, 666, 754
SsiI CCGC 3 cut(s) 174, 1130, 1250
SspDI GGCGCC 1 cut(s) 775
SspMI CTAG 6 cut(s) 60, 114, 224, 693, 858, 1278
StyD4I CCNGG 2 cut(s) 214, 571
StyI CCWWGG 1 cut(s) 236
TaaI ACNGT 5 cut(s) 16, 586, 772, 895, 1169
TaiI ACGT 2 cut(s) 1258, 1296
TaqI TCGA 5 cut(s) 18, 231, 555, 656, 827
TasI AATT 6 cut(s) 285, 304, 439, 566, 666, 754
TatI WGTACW 1 cut(s) 738
TfiI GAWTC 5 cut(s) 28, 142, 527, 579, 1337
Tru1I TTAA 4 cut(s) 243, 396, 647, 909
Tru9I TTAA 4 cut(s) 243, 396, 647, 909
TscAI CASTG 5 cut(s) 337, 589, 777, 1174, 1431
TseI GCWGC 6 cut(s) 50, 99, 158, 313, 479, 1329
TspDTI ATGAA 5 cut(s) 283, 351, 782, 810, 1050
TspGWI ACGGA 4 cut(s) 60, 84, 506, 908
TspRI CASTG 5 cut(s) 337, 589, 777, 1174, 1431
VpaK11BI GGWCC 1 cut(s) 496
XagI CCTNNNNNAGG 1 cut(s) 617
XapI RAATTY 4 cut(s) 439, 566, 666, 754
XbaI TCTAGA 1 cut(s) 223
XceI RCATGY 1 cut(s) 93
XcmI CCANNNNNNNNNTGG 1 cut(s) 896
XspI CTAG 6 cut(s) 60, 114, 224, 693, 858, 1278
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.