Zinc finger (C3HC4-type RING finger) family protein
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT3G56590 AT3G56590 |
| fragaria_vesca | FvH4_1g29240 FvH4_1g29240 FvH4_1g29240 FvH4_1g29240 |
| prunus_persica | Prupe.7G019800_v2.0.a1 Prupe.7G019800_v2.0.a1 |
| rosa_chinensis | RchiOBHm_Chr3g0494681 |
| rosa_laevigata | RLG00000022664 |
| rosa_multiflora | Rmu_sc0000840.1_g000020 |
| rosa_roxburghii | Rroxscaffold_6G00390970 |
| rosa_rugosa | Rorug03G0268000 Rorug03G0268000 Rorug03G0268000 |
| rosa_samantha | Rh3AG316500 Rh3BG351800 Rh3CG348800 Rh3DG351400 |
| rosa_wichuraiana | Rw3G027620 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 3 cut(s) | 955, 1093, 1378 |
| Acc36I | ACCTGC | 4 cut(s) | 460, 955, 1093, 1378 |
| AccB1I | GGYRCC | 1 cut(s) | 775 |
| AciI | CCGC | 3 cut(s) | 174, 1130, 1250 |
| AclWI | GGATC | 6 cut(s) | 116, 206, 227, 228, 419, 583 |
| AcsI | RAATTY | 4 cut(s) | 439, 566, 666, 754 |
| AcuI | CTGAAG | 1 cut(s) | 722 |
| AcyI | GRCGYC | 1 cut(s) | 776 |
| AfaI | GTAC | 1 cut(s) | 740 |
| AfeI | AGCGCT | 1 cut(s) | 375 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 183, 200, 537, 619, 1073 |
| AflIII | ACRYGT | 1 cut(s) | 89 |
| AgeI | ACCGGT | 1 cut(s) | 1212 |
| AgsI | TTSAA | 6 cut(s) | 380, 488, 637, 671, 768, 835 |
| AjiI | CACGTC | 1 cut(s) | 1256 |
| AjnI | CCWGG | 2 cut(s) | 214, 571 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 519, 551 |
| AluBI | AGCT | 7 cut(s) | 50, 117, 316, 345, 482, 700, 861 |
| AluI | AGCT | 7 cut(s) | 50, 117, 316, 345, 482, 700, 861 |
| Alw21I | GWGCWC | 1 cut(s) | 1174 |
| Alw26I | GTCTC | 3 cut(s) | 131, 1147, 1221 |
| AlwI | GGATC | 6 cut(s) | 116, 206, 227, 228, 419, 583 |
| Ama87I | CYCGRG | 1 cut(s) | 1120 |
| Aor51HI | AGCGCT | 1 cut(s) | 375 |
| AoxI | GGCC | 2 cut(s) | 621, 880 |
| ApeKI | GCWGC | 6 cut(s) | 50, 99, 158, 313, 479, 1329 |
| ApoI | RAATTY | 4 cut(s) | 439, 566, 666, 754 |
| AsiGI | ACCGGT | 1 cut(s) | 1212 |
| AspLEI | GCGC | 3 cut(s) | 376, 778, 1096 |
| AspS9I | GGNCC | 2 cut(s) | 496, 622 |
| AsuHPI | GGTGA | 6 cut(s) | 401, 936, 1016, 1053, 1101, 1359 |
| AsuNHI | GCTAGC | 1 cut(s) | 692 |
| AvaI | CYCGRG | 1 cut(s) | 1120 |
| AvaII | GGWCC | 1 cut(s) | 496 |
| BanI | GGYRCC | 1 cut(s) | 775 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 1378, 1410 |
| BbsI | GAAGAC | 2 cut(s) | 306, 1383 |
| Bbv12I | GWGCWC | 1 cut(s) | 1174 |
| BbvI | GCAGC | 6 cut(s) | 37, 86, 145, 325, 491, 1341 |
| BccI | CCATC | 4 cut(s) | 1011, 1038, 1188, 1327 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 32, 66 |
| BciT130I | CCWGG | 2 cut(s) | 216, 573 |
| BclI | TGATCA | 1 cut(s) | 471 |
| BcoDI | GTCTC | 3 cut(s) | 131, 1147, 1221 |
| BfaI | CTAG | 6 cut(s) | 60, 114, 224, 693, 858, 1278 |
| BfmI | CTRYAG | 3 cut(s) | 614, 786, 1347 |
| BfoI | RGCGCY | 3 cut(s) | 377, 779, 1097 |
| BfuAI | ACCTGC | 4 cut(s) | 460, 955, 1093, 1378 |
| BglII | AGATCT | 2 cut(s) | 226, 1415 |
| BisI | GCNGC | 6 cut(s) | 51, 100, 159, 314, 480, 1330 |
| BlsI | GCNGC | 6 cut(s) | 52, 101, 160, 315, 481, 1331 |
| Bme1390I | CCNGG | 2 cut(s) | 216, 573 |
| Bme18I | GGWCC | 1 cut(s) | 496 |
| BmeT110I | CYCGRG | 1 cut(s) | 1120 |
| BmgBI | CACGTC | 1 cut(s) | 1256 |
| BmgT120I | GGNCC | 2 cut(s) | 496, 622 |
| BmiI | GGNNCC | 2 cut(s) | 543, 777 |
| BmrFI | CCNGG | 2 cut(s) | 216, 573 |
| BmsI | GCATC | 4 cut(s) | 122, 300, 1097, 1430 |
| BmtI | GCTAGC | 1 cut(s) | 696 |
| BpiI | GAAGAC | 2 cut(s) | 306, 1383 |
| BpmI | CTGGAG | 2 cut(s) | 594, 1029 |
| BpuEI | CTTGAG | 2 cut(s) | 338, 1396 |
| BsaBI | GATNNNNATC | 3 cut(s) | 225, 231, 1420 |
| BsaHI | GRCGYC | 1 cut(s) | 776 |
| BsaI | GGTCTC | 2 cut(s) | 1147, 1221 |
| BsaJI | CCNNGG | 4 cut(s) | 199, 215, 236, 571 |
| BsaWI | WCCGGW | 1 cut(s) | 1212 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 183, 200, 537, 619, 1073 |
| Bse118I | RCCGGY | 1 cut(s) | 1212 |
| Bse1I | ACTGG | 1 cut(s) | 1271 |
| Bse8I | GATNNNNATC | 3 cut(s) | 225, 231, 1420 |
| BseBI | CCWGG | 2 cut(s) | 216, 573 |
| BseDI | CCNNGG | 4 cut(s) | 199, 215, 236, 571 |
| BseGI | GGATG | 1 cut(s) | 1009 |
| BseJI | GATNNNNATC | 3 cut(s) | 225, 231, 1420 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 183, 200, 537, 619, 1073 |
| BseMII | CTCAG | 4 cut(s) | 142, 420, 1232, 1418 |
| BseNI | ACTGG | 1 cut(s) | 1271 |
| BseRI | GAGGAG | 3 cut(s) | 35, 966, 1165 |
| BseXI | GCAGC | 6 cut(s) | 37, 86, 145, 325, 491, 1341 |
| BseYI | CCCAGC | 2 cut(s) | 597, 1243 |
| BsgI | GTGCAG | 2 cut(s) | 1173, 1188 |
| BshFI | GGCC | 2 cut(s) | 623, 882 |
| BshNI | GGYRCC | 1 cut(s) | 775 |
| BshTI | ACCGGT | 1 cut(s) | 1212 |
| BsiHKAI | GWGCWC | 1 cut(s) | 1174 |
| BsiHKCI | CYCGRG | 1 cut(s) | 1120 |
| BsiSI | CCGG | 1 cut(s) | 1213 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 183, 200, 537, 619, 1073 |
| BsmAI | GTCTC | 3 cut(s) | 131, 1147, 1221 |
| BsnI | GGCC | 2 cut(s) | 623, 882 |
| Bso31I | GGTCTC | 2 cut(s) | 1147, 1221 |
| BsoBI | CYCGRG | 1 cut(s) | 1120 |
| Bsp1286I | GDGCHC | 1 cut(s) | 1174 |
| Bsp1407I | TGTACA | 1 cut(s) | 738 |
| BspACI | CCGC | 3 cut(s) | 174, 1130, 1250 |
| BspANI | GGCC | 2 cut(s) | 623, 882 |
| BspCNI | CTCAG | 4 cut(s) | 141, 421, 1231, 1417 |
| BspHI | TCATGA | 1 cut(s) | 1033 |
| BspLI | GGNNCC | 2 cut(s) | 543, 777 |
| BspMAI | CTGCAG | 1 cut(s) | 618 |
| BspMI | ACCTGC | 4 cut(s) | 460, 955, 1093, 1378 |
| BspOI | GCTAGC | 1 cut(s) | 696 |
| BspPI | GGATC | 6 cut(s) | 116, 206, 227, 228, 419, 583 |
| BspT107I | GGYRCC | 1 cut(s) | 775 |
| BspTNI | GGTCTC | 2 cut(s) | 1147, 1221 |
| BsrFI | RCCGGY | 1 cut(s) | 1212 |
| BsrGI | TGTACA | 1 cut(s) | 738 |
| BsrI | ACTGG | 1 cut(s) | 1271 |
| BssAI | RCCGGY | 1 cut(s) | 1212 |
| BssECI | CCNNGG | 4 cut(s) | 199, 215, 236, 571 |
| BssNI | GRCGYC | 1 cut(s) | 776 |
| BssT1I | CCWWGG | 1 cut(s) | 236 |
| Bst2UI | CCWGG | 2 cut(s) | 216, 573 |
| Bst4CI | ACNGT | 5 cut(s) | 16, 586, 772, 895, 1169 |
| BstACI | GRCGYC | 1 cut(s) | 776 |
| BstAUI | TGTACA | 1 cut(s) | 738 |
| BstC8I | GCNNGC | 3 cut(s) | 694, 698, 1203 |
| BstDEI | CTNAG | 5 cut(s) | 128, 429, 444, 1218, 1404 |
| BstEII | GGTNACC | 1 cut(s) | 186 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 617 |
| BstF5I | GGATG | 1 cut(s) | 1009 |
| BstH2I | RGCGCY | 3 cut(s) | 377, 779, 1097 |
| BstHHI | GCGC | 3 cut(s) | 376, 778, 1096 |
| BstMAI | GTCTC | 3 cut(s) | 131, 1147, 1221 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 56, 155 |
| BstNI | CCWGG | 2 cut(s) | 216, 573 |
| BstNSI | RCATGY | 1 cut(s) | 93 |
| BstPI | GGTNACC | 1 cut(s) | 186 |
| BstSCI | CCNGG | 2 cut(s) | 214, 571 |
| BstSFI | CTRYAG | 3 cut(s) | 614, 786, 1347 |
| BstV1I | GCAGC | 6 cut(s) | 37, 86, 145, 325, 491, 1341 |
| BstV2I | GAAGAC | 2 cut(s) | 306, 1383 |
| BstX2I | RGATCY | 5 cut(s) | 108, 211, 220, 226, 1415 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 364 |
| BstYI | RGATCY | 5 cut(s) | 108, 211, 220, 226, 1415 |
| BsuRI | GGCC | 2 cut(s) | 623, 882 |
| BtrI | CACGTC | 1 cut(s) | 1256 |
| BtsCI | GGATG | 1 cut(s) | 1009 |
| BtsIMutI | CAGTG | 5 cut(s) | 330, 582, 777, 1174, 1424 |
| BveI | ACCTGC | 4 cut(s) | 460, 955, 1093, 1378 |
| Cac8I | GCNNGC | 3 cut(s) | 694, 698, 1203 |
| CciI | TCATGA | 1 cut(s) | 1033 |
| CfoI | GCGC | 3 cut(s) | 376, 778, 1096 |
| Cfr10I | RCCGGY | 1 cut(s) | 1212 |
| Cfr13I | GGNCC | 2 cut(s) | 496, 622 |
| Csp6I | GTAC | 1 cut(s) | 739 |
| CspAI | ACCGGT | 1 cut(s) | 1212 |
| CviAII | CATG | 6 cut(s) | 90, 295, 352, 1034, 1262, 1383 |
| CviQI | GTAC | 1 cut(s) | 739 |
| DdeI | CTNAG | 5 cut(s) | 128, 429, 444, 1218, 1404 |
| DinI | GGCGCC | 1 cut(s) | 777 |
| DraI | TTTAAA | 1 cut(s) | 244 |
| EciI | GGCGGA | 1 cut(s) | 163 |
| Eco130I | CCWWGG | 1 cut(s) | 236 |
| Eco31I | GGTCTC | 2 cut(s) | 1147, 1221 |
| Eco32I | GATATC | 1 cut(s) | 328 |
| Eco47I | GGWCC | 1 cut(s) | 496 |
| Eco47III | AGCGCT | 1 cut(s) | 375 |
| Eco57I | CTGAAG | 1 cut(s) | 722 |
| Eco88I | CYCGRG | 1 cut(s) | 1120 |
| Eco91I | GGTNACC | 1 cut(s) | 186 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 617 |
| EcoO65I | GGTNACC | 1 cut(s) | 186 |
| EcoRI | GAATTC | 1 cut(s) | 439 |
| EcoRII | CCWGG | 2 cut(s) | 214, 571 |
| EcoRV | GATATC | 1 cut(s) | 328 |
| EcoT14I | CCWWGG | 1 cut(s) | 236 |
| EgeI | GGCGCC | 1 cut(s) | 777 |
| EheI | GGCGCC | 1 cut(s) | 777 |
| ErhI | CCWWGG | 1 cut(s) | 236 |
| FaeI | CATG | 6 cut(s) | 93, 298, 355, 1037, 1265, 1386 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 906, 938 |
| FatI | CATG | 6 cut(s) | 89, 294, 351, 1033, 1261, 1382 |
| FauI | CCCGC | 2 cut(s) | 1137, 1257 |
| FbaI | TGATCA | 1 cut(s) | 471 |
| Fnu4HI | GCNGC | 6 cut(s) | 51, 100, 159, 314, 480, 1330 |
| FokI | GGATG | 1 cut(s) | 996 |
| Fsp4HI | GCNGC | 6 cut(s) | 51, 100, 159, 314, 480, 1330 |
| FspBI | CTAG | 6 cut(s) | 60, 114, 224, 693, 858, 1278 |
| GlaI | GCGC | 3 cut(s) | 375, 777, 1095 |
| GluI | GCNGC | 6 cut(s) | 51, 100, 159, 314, 480, 1330 |
| GsaI | CCCAGC | 2 cut(s) | 601, 1247 |
| GsuI | CTGGAG | 2 cut(s) | 594, 1029 |
| HaeII | RGCGCY | 3 cut(s) | 377, 779, 1097 |
| HaeIII | GGCC | 2 cut(s) | 623, 882 |
| HapII | CCGG | 1 cut(s) | 1213 |
| HhaI | GCGC | 3 cut(s) | 376, 778, 1096 |
| Hin1I | GRCGYC | 1 cut(s) | 776 |
| Hin1II | CATG | 6 cut(s) | 93, 298, 355, 1037, 1265, 1386 |
| Hin6I | GCGC | 3 cut(s) | 374, 776, 1094 |
| HinP1I | GCGC | 3 cut(s) | 374, 776, 1094 |
| HindIII | AAGCTT | 1 cut(s) | 343 |
| HinfI | GANTC | 6 cut(s) | 28, 142, 466, 527, 579, 1337 |
| HpaII | CCGG | 1 cut(s) | 1213 |
| HphI | GGTGA | 6 cut(s) | 401, 936, 1016, 1053, 1101, 1359 |
| Hpy188I | TCNGA | 4 cut(s) | 131, 203, 471, 1342 |
| Hpy188III | TCNNGA | 7 cut(s) | 224, 230, 428, 759, 1034, 1046, 1413 |
| Hpy99I | CGWCG | 2 cut(s) | 20, 47 |
| HpyAV | CCTTC | 6 cut(s) | 427, 613, 700, 975, 981, 1062 |
| HpyCH4III | ACNGT | 5 cut(s) | 16, 586, 772, 895, 1169 |
| HpyCH4IV | ACGT | 2 cut(s) | 1255, 1293 |
| HpyCH4V | TGCA | 8 cut(s) | 209, 313, 616, 1082, 1088, 1190, 1205, 1421 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 56, 155 |
| HpyF3I | CTNAG | 5 cut(s) | 128, 429, 444, 1218, 1404 |
| HpySE526I | ACGT | 2 cut(s) | 1255, 1293 |
| Hsp92I | GRCGYC | 1 cut(s) | 776 |
| Hsp92II | CATG | 6 cut(s) | 93, 298, 355, 1037, 1265, 1386 |
| HspAI | GCGC | 3 cut(s) | 374, 776, 1094 |
| KasI | GGCGCC | 1 cut(s) | 775 |
| Ksp22I | TGATCA | 1 cut(s) | 471 |
| LmnI | GCTCC | 5 cut(s) | 22, 47, 866, 1048, 1378 |
| Lsp1109I | GCAGC | 6 cut(s) | 37, 86, 145, 325, 491, 1341 |
| LweI | GCATC | 4 cut(s) | 122, 300, 1097, 1430 |
| MaeI | CTAG | 6 cut(s) | 60, 114, 224, 693, 858, 1278 |
| MaeII | ACGT | 2 cut(s) | 1255, 1293 |
| MaeIII | GTNAC | 1 cut(s) | 186 |
| MboII | GAAGA | 7 cut(s) | 19, 311, 715, 789, 816, 1383, 1386 |
| MflI | RGATCY | 5 cut(s) | 108, 211, 220, 226, 1415 |
| MhlI | GDGCHC | 1 cut(s) | 1174 |
| MluCI | AATT | 6 cut(s) | 285, 304, 439, 566, 666, 754 |
| Mly113I | GGCGCC | 1 cut(s) | 776 |
| MlyI | GAGTC | 1 cut(s) | 475 |
| MmeI | TCCRAC | 3 cut(s) | 256, 1091, 1400 |
| MseI | TTAA | 4 cut(s) | 243, 396, 647, 909 |
| MslI | CAYNNNNRTG | 1 cut(s) | 1032 |
| MspA1I | CMGCKG | 1 cut(s) | 700 |
| MspI | CCGG | 1 cut(s) | 1213 |
| MspR9I | CCNGG | 2 cut(s) | 216, 573 |
| MvaI | CCWGG | 2 cut(s) | 216, 573 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 56, 155 |
| NarI | GGCGCC | 1 cut(s) | 776 |
| NheI | GCTAGC | 1 cut(s) | 692 |
| NlaIII | CATG | 6 cut(s) | 93, 298, 355, 1037, 1265, 1386 |
| NlaIV | GGNNCC | 2 cut(s) | 543, 777 |
| NmeAIII | GCCGAG | 1 cut(s) | 858 |
| NspI | RCATGY | 1 cut(s) | 93 |
| PagI | TCATGA | 1 cut(s) | 1033 |
| PaqCI | CACCTGC | 3 cut(s) | 955, 1093, 1378 |
| PciI | ACATGT | 1 cut(s) | 89 |
| PfeI | GAWTC | 5 cut(s) | 28, 142, 527, 579, 1337 |
| PinAI | ACCGGT | 1 cut(s) | 1212 |
| PkrI | GCNGC | 6 cut(s) | 52, 101, 160, 315, 481, 1331 |
| PleI | GAGTC | 1 cut(s) | 474 |
| PluTI | GGCGCC | 1 cut(s) | 779 |
| PpsI | GAGTC | 1 cut(s) | 474 |
| PscI | ACATGT | 1 cut(s) | 89 |
| Psp6I | CCWGG | 2 cut(s) | 214, 571 |
| PspEI | GGTNACC | 1 cut(s) | 186 |
| PspFI | CCCAGC | 2 cut(s) | 597, 1243 |
| PspGI | CCWGG | 2 cut(s) | 214, 571 |
| PspN4I | GGNNCC | 2 cut(s) | 543, 777 |
| PspPI | GGNCC | 2 cut(s) | 496, 622 |
| PstI | CTGCAG | 1 cut(s) | 618 |
| PsuI | RGATCY | 5 cut(s) | 108, 211, 220, 226, 1415 |
| PvuII | CAGCTG | 1 cut(s) | 700 |
| RsaI | GTAC | 1 cut(s) | 740 |
| RsaNI | GTAC | 1 cut(s) | 739 |
| RseI | CAYNNNNRTG | 1 cut(s) | 1032 |
| SaqAI | TTAA | 4 cut(s) | 243, 396, 647, 909 |
| SatI | GCNGC | 6 cut(s) | 51, 100, 159, 314, 480, 1330 |
| Sau96I | GGNCC | 2 cut(s) | 496, 622 |
| SchI | GAGTC | 1 cut(s) | 475 |
| ScrFI | CCNGG | 2 cut(s) | 216, 573 |
| SduI | GDGCHC | 1 cut(s) | 1174 |
| SfaNI | GCATC | 4 cut(s) | 122, 300, 1097, 1430 |
| SfcI | CTRYAG | 3 cut(s) | 614, 786, 1347 |
| SfoI | GGCGCC | 1 cut(s) | 777 |
| SinI | GGWCC | 1 cut(s) | 496 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 1032 |
| SmlI | CTYRAG | 2 cut(s) | 317, 1411 |
| SmoI | CTYRAG | 2 cut(s) | 317, 1411 |
| Sse9I | AATT | 6 cut(s) | 285, 304, 439, 566, 666, 754 |
| SsiI | CCGC | 3 cut(s) | 174, 1130, 1250 |
| SspDI | GGCGCC | 1 cut(s) | 775 |
| SspMI | CTAG | 6 cut(s) | 60, 114, 224, 693, 858, 1278 |
| StyD4I | CCNGG | 2 cut(s) | 214, 571 |
| StyI | CCWWGG | 1 cut(s) | 236 |
| TaaI | ACNGT | 5 cut(s) | 16, 586, 772, 895, 1169 |
| TaiI | ACGT | 2 cut(s) | 1258, 1296 |
| TaqI | TCGA | 5 cut(s) | 18, 231, 555, 656, 827 |
| TasI | AATT | 6 cut(s) | 285, 304, 439, 566, 666, 754 |
| TatI | WGTACW | 1 cut(s) | 738 |
| TfiI | GAWTC | 5 cut(s) | 28, 142, 527, 579, 1337 |
| Tru1I | TTAA | 4 cut(s) | 243, 396, 647, 909 |
| Tru9I | TTAA | 4 cut(s) | 243, 396, 647, 909 |
| TscAI | CASTG | 5 cut(s) | 337, 589, 777, 1174, 1431 |
| TseI | GCWGC | 6 cut(s) | 50, 99, 158, 313, 479, 1329 |
| TspDTI | ATGAA | 5 cut(s) | 283, 351, 782, 810, 1050 |
| TspGWI | ACGGA | 4 cut(s) | 60, 84, 506, 908 |
| TspRI | CASTG | 5 cut(s) | 337, 589, 777, 1174, 1431 |
| VpaK11BI | GGWCC | 1 cut(s) | 496 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 617 |
| XapI | RAATTY | 4 cut(s) | 439, 566, 666, 754 |
| XbaI | TCTAGA | 1 cut(s) | 223 |
| XceI | RCATGY | 1 cut(s) | 93 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 896 |
| XspI | CTAG | 6 cut(s) | 60, 114, 224, 693, 858, 1278 |