Zinc finger (C3HC4-type RING finger) family protein
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT3G56590 AT3G56590 |
| fragaria_vesca | FvH4_1g29240 FvH4_1g29240 FvH4_1g29240 FvH4_1g29240 |
| prunus_persica | Prupe.7G019800_v2.0.a1 Prupe.7G019800_v2.0.a1 |
| rosa_chinensis | RchiOBHm_Chr3g0494681 |
| rosa_laevigata | RLG00000022664 |
| rosa_multiflora | Rmu_sc0000840.1_g000020 |
| rosa_roxburghii | Rroxscaffold_6G00390970 |
| rosa_rugosa | Rorug03G0268000 Rorug03G0268000 Rorug03G0268000 |
| rosa_samantha | Rh3AG316500 Rh3BG351800 Rh3CG348800 Rh3DG351400 |
| rosa_wichuraiana | Rw3G027620 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 2 cut(s) | 1096, 1102 |
| Acc36I | ACCTGC | 2 cut(s) | 1096, 1102 |
| Acc65I | GGTACC | 1 cut(s) | 1301 |
| AccB1I | GGYRCC | 1 cut(s) | 1301 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 1218 |
| AciI | CCGC | 5 cut(s) | 41, 206, 1042, 1116, 1400 |
| AclI | AACGTT | 1 cut(s) | 1121 |
| AclWI | GGATC | 5 cut(s) | 216, 224, 231, 397, 416 |
| AcsI | RAATTY | 4 cut(s) | 478, 560, 670, 748 |
| AcuI | CTGAAG | 3 cut(s) | 33, 182, 716 |
| AdeI | CACNNNGTG | 1 cut(s) | 972 |
| AfaI | GTAC | 2 cut(s) | 1303, 1353 |
| AfiI | CCNNNNNNNGG | 6 cut(s) | 373, 531, 1100, 1218, 1298, 1537 |
| AjnI | CCWGG | 3 cut(s) | 879, 1135, 1450 |
| Alw21I | GWGCWC | 1 cut(s) | 1135 |
| Alw26I | GTCTC | 2 cut(s) | 65, 1257 |
| Alw44I | GTGCAC | 1 cut(s) | 1131 |
| AlwI | GGATC | 5 cut(s) | 216, 224, 231, 397, 416 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 1487 |
| AoxI | GGCC | 3 cut(s) | 121, 883, 1139 |
| ApaLI | GTGCAC | 1 cut(s) | 1131 |
| ApeKI | GCWGC | 6 cut(s) | 310, 770, 1145, 1478, 1481, 1490 |
| ApoI | RAATTY | 4 cut(s) | 478, 560, 670, 748 |
| AseI | ATTAAT | 1 cut(s) | 1472 |
| Asp718I | GGTACC | 1 cut(s) | 1301 |
| AspS9I | GGNCC | 6 cut(s) | 111, 534, 883, 1109, 1139, 1454 |
| AsuHPI | GGTGA | 8 cut(s) | 628, 969, 1028, 1046, 1077, 1146, 1299, 1440 |
| AsuNHI | GCTAGC | 1 cut(s) | 1069 |
| AvaII | GGWCC | 4 cut(s) | 111, 534, 1109, 1454 |
| BaeGI | GKGCMC | 1 cut(s) | 1135 |
| BanI | GGYRCC | 1 cut(s) | 1301 |
| BanII | GRGCYC | 1 cut(s) | 47 |
| Bbv12I | GWGCWC | 1 cut(s) | 1135 |
| BbvI | GCAGC | 6 cut(s) | 322, 782, 1132, 1490, 1493, 1502 |
| BceAI | ACGGC | 2 cut(s) | 229, 1447 |
| BciT130I | CCWGG | 3 cut(s) | 881, 1137, 1452 |
| BclI | TGATCA | 1 cut(s) | 468 |
| BcoDI | GTCTC | 2 cut(s) | 65, 1257 |
| BfaI | CTAG | 4 cut(s) | 713, 1070, 1362, 1532 |
| BfmI | CTRYAG | 3 cut(s) | 252, 608, 1488 |
| BfuAI | ACCTGC | 2 cut(s) | 1096, 1102 |
| BisI | GCNGC | 6 cut(s) | 311, 771, 1146, 1479, 1482, 1491 |
| BlsI | GCNGC | 6 cut(s) | 312, 772, 1147, 1480, 1483, 1492 |
| Bme1390I | CCNGG | 3 cut(s) | 881, 1137, 1452 |
| Bme18I | GGWCC | 4 cut(s) | 111, 534, 1109, 1454 |
| BmgT120I | GGNCC | 6 cut(s) | 111, 534, 883, 1109, 1139, 1454 |
| BmiI | GGNNCC | 3 cut(s) | 113, 535, 1303 |
| BmrFI | CCNGG | 3 cut(s) | 881, 1137, 1452 |
| BmsI | GCATC | 2 cut(s) | 119, 1367 |
| BmtI | GCTAGC | 1 cut(s) | 1073 |
| BpmI | CTGGAG | 1 cut(s) | 314 |
| Bpu10I | CCTNAGC | 2 cut(s) | 382, 1158 |
| BsaBI | GATNNNNATC | 2 cut(s) | 222, 228 |
| BsaJI | CCNNGG | 2 cut(s) | 880, 1136 |
| Bsc4I | CCNNNNNNNGG | 6 cut(s) | 373, 531, 1100, 1218, 1298, 1537 |
| Bse118I | RCCGGY | 2 cut(s) | 280, 1268 |
| Bse1I | ACTGG | 4 cut(s) | 36, 687, 849, 1105 |
| Bse3DI | GCAATG | 2 cut(s) | 180, 992 |
| Bse8I | GATNNNNATC | 2 cut(s) | 222, 228 |
| BseBI | CCWGG | 3 cut(s) | 881, 1137, 1452 |
| BseDI | CCNNGG | 2 cut(s) | 880, 1136 |
| BseGI | GGATG | 3 cut(s) | 56, 521, 1000 |
| BseJI | GATNNNNATC | 2 cut(s) | 222, 228 |
| BseLI | CCNNNNNNNGG | 6 cut(s) | 373, 531, 1100, 1218, 1298, 1537 |
| BseMI | GCAATG | 2 cut(s) | 180, 992 |
| BseMII | CTCAG | 4 cut(s) | 139, 500, 1149, 1176 |
| BseNI | ACTGG | 4 cut(s) | 36, 687, 849, 1105 |
| BseRI | GAGGAG | 1 cut(s) | 1278 |
| BseSI | GKGCMC | 1 cut(s) | 1135 |
| BseXI | GCAGC | 6 cut(s) | 322, 782, 1132, 1490, 1493, 1502 |
| BseYI | CCCAGC | 2 cut(s) | 1065, 1211 |
| BsgI | GTGCAG | 2 cut(s) | 1074, 1164 |
| BshFI | GGCC | 3 cut(s) | 123, 885, 1141 |
| BshNI | GGYRCC | 1 cut(s) | 1301 |
| BsiHKAI | GWGCWC | 1 cut(s) | 1135 |
| BsiSI | CCGG | 2 cut(s) | 281, 1269 |
| BslI | CCNNNNNNNGG | 6 cut(s) | 373, 531, 1100, 1218, 1298, 1537 |
| BsmAI | GTCTC | 2 cut(s) | 65, 1257 |
| BsnI | GGCC | 3 cut(s) | 123, 885, 1141 |
| Bsp1286I | GDGCHC | 2 cut(s) | 47, 1135 |
| Bsp143I | GATC | 8 cut(s) | 208, 217, 223, 229, 244, 389, 421, 468 |
| BspACI | CCGC | 5 cut(s) | 41, 206, 1042, 1116, 1400 |
| BspANI | GGCC | 3 cut(s) | 123, 885, 1141 |
| BspCNI | CTCAG | 4 cut(s) | 138, 501, 1150, 1177 |
| BspLI | GGNNCC | 3 cut(s) | 113, 535, 1303 |
| BspMAI | CTGCAG | 2 cut(s) | 612, 1492 |
| BspMI | ACCTGC | 2 cut(s) | 1096, 1102 |
| BspOI | GCTAGC | 1 cut(s) | 1073 |
| BspPI | GGATC | 5 cut(s) | 216, 224, 231, 397, 416 |
| BspQI | GCTCTTC | 1 cut(s) | 1500 |
| BspT107I | GGYRCC | 1 cut(s) | 1301 |
| BsrDI | GCAATG | 2 cut(s) | 180, 992 |
| BsrFI | RCCGGY | 2 cut(s) | 280, 1268 |
| BsrI | ACTGG | 4 cut(s) | 36, 687, 849, 1105 |
| BssAI | RCCGGY | 2 cut(s) | 280, 1268 |
| BssECI | CCNNGG | 2 cut(s) | 880, 1136 |
| BssMI | GATC | 8 cut(s) | 208, 217, 223, 229, 244, 389, 421, 468 |
| Bst2UI | CCWGG | 3 cut(s) | 881, 1137, 1452 |
| Bst4CI | ACNGT | 5 cut(s) | 83, 766, 784, 808, 898 |
| Bst6I | CTCTTC | 1 cut(s) | 1500 |
| BstAPI | GCANNNNNTGC | 2 cut(s) | 616, 1487 |
| BstC8I | GCNNGC | 6 cut(s) | 43, 692, 1071, 1143, 1179, 1270 |
| BstDEI | CTNAG | 5 cut(s) | 125, 382, 509, 1158, 1185 |
| BstEII | GGTNACC | 1 cut(s) | 975 |
| BstF5I | GGATG | 3 cut(s) | 56, 521, 1000 |
| BstKTI | GATC | 8 cut(s) | 211, 220, 226, 232, 247, 392, 424, 471 |
| BstMAI | GTCTC | 2 cut(s) | 65, 1257 |
| BstMBI | GATC | 8 cut(s) | 208, 217, 223, 229, 244, 389, 421, 468 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 129, 616, 1487, 1490 |
| BstNI | CCWGG | 3 cut(s) | 881, 1137, 1452 |
| BstPI | GGTNACC | 1 cut(s) | 975 |
| BstSCI | CCNGG | 3 cut(s) | 879, 1135, 1450 |
| BstSFI | CTRYAG | 3 cut(s) | 252, 608, 1488 |
| BstSLI | GKGCMC | 1 cut(s) | 1135 |
| BstV1I | GCAGC | 6 cut(s) | 322, 782, 1132, 1490, 1493, 1502 |
| BstX2I | RGATCY | 1 cut(s) | 223 |
| BstYI | RGATCY | 1 cut(s) | 223 |
| BsuRI | GGCC | 3 cut(s) | 123, 885, 1141 |
| BtgZI | GCGATG | 2 cut(s) | 1031, 1443 |
| BtsCI | GGATG | 3 cut(s) | 56, 521, 1000 |
| BtsI | GCAGTG | 2 cut(s) | 966, 1111 |
| BtsIMutI | CAGTG | 5 cut(s) | 43, 506, 771, 966, 1111 |
| BveI | ACCTGC | 2 cut(s) | 1096, 1102 |
| Cac8I | GCNNGC | 6 cut(s) | 43, 692, 1071, 1143, 1179, 1270 |
| CaiI | CAGNNNCTG | 1 cut(s) | 1487 |
| Cfr10I | RCCGGY | 2 cut(s) | 280, 1268 |
| Cfr13I | GGNCC | 6 cut(s) | 111, 534, 883, 1109, 1139, 1454 |
| Csp6I | GTAC | 2 cut(s) | 1302, 1352 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 339, 374 |
| CviAII | CATG | 3 cut(s) | 1019, 1376, 1391 |
| CviQI | GTAC | 2 cut(s) | 1302, 1352 |
| DdeI | CTNAG | 5 cut(s) | 125, 382, 509, 1158, 1185 |
| DpnI | GATC | 8 cut(s) | 210, 219, 225, 231, 246, 391, 423, 470 |
| DpnII | GATC | 8 cut(s) | 208, 217, 223, 229, 244, 389, 421, 468 |
| DraIII | CACNNNGTG | 1 cut(s) | 972 |
| Eam1104I | CTCTTC | 1 cut(s) | 1500 |
| EarI | CTCTTC | 1 cut(s) | 1500 |
| EciI | GGCGGA | 1 cut(s) | 1389 |
| Eco24I | GRGCYC | 1 cut(s) | 47 |
| Eco47I | GGWCC | 4 cut(s) | 111, 534, 1109, 1454 |
| Eco57I | CTGAAG | 3 cut(s) | 33, 182, 716 |
| Eco91I | GGTNACC | 1 cut(s) | 975 |
| EcoO65I | GGTNACC | 1 cut(s) | 975 |
| EcoRII | CCWGG | 3 cut(s) | 879, 1135, 1450 |
| EcoT22I | ATGCAT | 1 cut(s) | 134 |
| EcoT38I | GRGCYC | 1 cut(s) | 47 |
| FaeI | CATG | 3 cut(s) | 1022, 1379, 1394 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 588, 620, 909, 941 |
| FatI | CATG | 3 cut(s) | 1018, 1375, 1390 |
| FauI | CCCGC | 2 cut(s) | 34, 1123 |
| FauNDI | CATATG | 1 cut(s) | 793 |
| FbaI | TGATCA | 1 cut(s) | 468 |
| Fnu4HI | GCNGC | 6 cut(s) | 311, 771, 1146, 1479, 1482, 1491 |
| FokI | GGATG | 3 cut(s) | 43, 508, 987 |
| FriOI | GRGCYC | 1 cut(s) | 47 |
| Fsp4HI | GCNGC | 6 cut(s) | 311, 771, 1146, 1479, 1482, 1491 |
| FspBI | CTAG | 4 cut(s) | 713, 1070, 1362, 1532 |
| GluI | GCNGC | 6 cut(s) | 311, 771, 1146, 1479, 1482, 1491 |
| GsaI | CCCAGC | 2 cut(s) | 1069, 1215 |
| GsuI | CTGGAG | 1 cut(s) | 314 |
| HaeIII | GGCC | 3 cut(s) | 123, 885, 1141 |
| HapII | CCGG | 2 cut(s) | 281, 1269 |
| Hin1II | CATG | 3 cut(s) | 1022, 1379, 1394 |
| HincII | GTYRAC | 2 cut(s) | 351, 1467 |
| HindII | GTYRAC | 2 cut(s) | 351, 1467 |
| HinfI | GANTC | 7 cut(s) | 73, 106, 377, 405, 434, 909, 1415 |
| HpaII | CCGG | 2 cut(s) | 281, 1269 |
| HphI | GGTGA | 8 cut(s) | 628, 969, 1028, 1046, 1077, 1146, 1299, 1440 |
| Hpy166II | GTNNAC | 5 cut(s) | 351, 537, 1112, 1133, 1467 |
| Hpy188I | TCNGA | 6 cut(s) | 49, 111, 128, 242, 276, 1420 |
| Hpy188III | TCNNGA | 6 cut(s) | 221, 227, 374, 425, 566, 873 |
| Hpy8I | GTNNAC | 5 cut(s) | 351, 537, 1112, 1133, 1467 |
| HpyAV | CCTTC | 4 cut(s) | 8, 831, 990, 1231 |
| HpyCH4III | ACNGT | 5 cut(s) | 83, 766, 784, 808, 898 |
| HpyCH4IV | ACGT | 1 cut(s) | 1121 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 129, 616, 1487, 1490 |
| HpyF3I | CTNAG | 5 cut(s) | 125, 382, 509, 1158, 1185 |
| HpySE526I | ACGT | 1 cut(s) | 1121 |
| Hsp92II | CATG | 3 cut(s) | 1022, 1379, 1394 |
| KpnI | GGTACC | 1 cut(s) | 1305 |
| KroI | GCCGGC | 1 cut(s) | 1268 |
| KroNI | GCCGGC | 1 cut(s) | 1270 |
| Ksp22I | TGATCA | 1 cut(s) | 468 |
| Kzo9I | GATC | 8 cut(s) | 208, 217, 223, 229, 244, 389, 421, 468 |
| LguI | GCTCTTC | 1 cut(s) | 1500 |
| LmnI | GCTCC | 3 cut(s) | 349, 994, 1078 |
| Lsp1109I | GCAGC | 6 cut(s) | 322, 782, 1132, 1490, 1493, 1502 |
| LweI | GCATC | 2 cut(s) | 119, 1367 |
| MaeI | CTAG | 4 cut(s) | 713, 1070, 1362, 1532 |
| MaeII | ACGT | 1 cut(s) | 1121 |
| MaeIII | GTNAC | 5 cut(s) | 397, 493, 705, 975, 1542 |
| MalI | GATC | 8 cut(s) | 210, 219, 225, 231, 246, 391, 423, 470 |
| MboI | GATC | 8 cut(s) | 208, 217, 223, 229, 244, 389, 421, 468 |
| MboII | GAAGA | 6 cut(s) | 188, 263, 329, 596, 1388, 1487 |
| MflI | RGATCY | 1 cut(s) | 223 |
| MhlI | GDGCHC | 2 cut(s) | 47, 1135 |
| MlyI | GAGTC | 3 cut(s) | 67, 414, 918 |
| Mph1103I | ATGCAT | 1 cut(s) | 134 |
| MroNI | GCCGGC | 1 cut(s) | 1268 |
| MseI | TTAA | 3 cut(s) | 641, 836, 1472 |
| MspA1I | CMGCKG | 2 cut(s) | 694, 1145 |
| MspI | CCGG | 2 cut(s) | 281, 1269 |
| MspR9I | CCNGG | 3 cut(s) | 881, 1137, 1452 |
| MvaI | CCWGG | 3 cut(s) | 881, 1137, 1452 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 129, 616, 1487, 1490 |
| NaeI | GCCGGC | 1 cut(s) | 1270 |
| NdeI | CATATG | 1 cut(s) | 793 |
| NdeII | GATC | 8 cut(s) | 208, 217, 223, 229, 244, 389, 421, 468 |
| NgoMIV | GCCGGC | 1 cut(s) | 1268 |
| NheI | GCTAGC | 1 cut(s) | 1069 |
| NlaIII | CATG | 3 cut(s) | 1022, 1379, 1394 |
| NlaIV | GGNNCC | 3 cut(s) | 113, 535, 1303 |
| NmuCI | GTSAC | 2 cut(s) | 493, 975 |
| NsiI | ATGCAT | 1 cut(s) | 134 |
| PaqCI | CACCTGC | 2 cut(s) | 1096, 1102 |
| PciSI | GCTCTTC | 1 cut(s) | 1500 |
| PdiI | GCCGGC | 1 cut(s) | 1270 |
| PfeI | GAWTC | 4 cut(s) | 106, 377, 434, 1415 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 1218 |
| PkrI | GCNGC | 6 cut(s) | 312, 772, 1147, 1480, 1483, 1492 |
| PleI | GAGTC | 3 cut(s) | 67, 413, 917 |
| PpsI | GAGTC | 3 cut(s) | 67, 413, 917 |
| PshBI | ATTAAT | 1 cut(s) | 1472 |
| Psp1406I | AACGTT | 1 cut(s) | 1121 |
| Psp6I | CCWGG | 3 cut(s) | 879, 1135, 1450 |
| PspEI | GGTNACC | 1 cut(s) | 975 |
| PspFI | CCCAGC | 2 cut(s) | 1065, 1211 |
| PspGI | CCWGG | 3 cut(s) | 879, 1135, 1450 |
| PspN4I | GGNNCC | 3 cut(s) | 113, 535, 1303 |
| PspPI | GGNCC | 6 cut(s) | 111, 534, 883, 1109, 1139, 1454 |
| PstI | CTGCAG | 2 cut(s) | 612, 1492 |
| PstNI | CAGNNNCTG | 1 cut(s) | 1487 |
| PsuI | RGATCY | 1 cut(s) | 223 |
| PvuII | CAGCTG | 2 cut(s) | 694, 1145 |
| RsaI | GTAC | 2 cut(s) | 1303, 1353 |
| RsaNI | GTAC | 2 cut(s) | 1302, 1352 |
| SapI | GCTCTTC | 1 cut(s) | 1500 |
| SaqAI | TTAA | 3 cut(s) | 641, 836, 1472 |
| SatI | GCNGC | 6 cut(s) | 311, 771, 1146, 1479, 1482, 1491 |
| Sau3AI | GATC | 8 cut(s) | 208, 217, 223, 229, 244, 389, 421, 468 |
| Sau96I | GGNCC | 6 cut(s) | 111, 534, 883, 1109, 1139, 1454 |
| SchI | GAGTC | 3 cut(s) | 67, 414, 918 |
| ScrFI | CCNGG | 3 cut(s) | 881, 1137, 1452 |
| SduI | GDGCHC | 2 cut(s) | 47, 1135 |
| SfaNI | GCATC | 2 cut(s) | 119, 1367 |
| SfcI | CTRYAG | 3 cut(s) | 252, 608, 1488 |
| SinI | GGWCC | 4 cut(s) | 111, 534, 1109, 1454 |
| SsiI | CCGC | 5 cut(s) | 41, 206, 1042, 1116, 1400 |
| SspMI | CTAG | 4 cut(s) | 713, 1070, 1362, 1532 |
| StyD4I | CCNGG | 3 cut(s) | 879, 1135, 1450 |
| TaaI | ACNGT | 5 cut(s) | 83, 766, 784, 808, 898 |
| TaiI | ACGT | 1 cut(s) | 1124 |
| TaqI | TCGA | 1 cut(s) | 549 |
| TfiI | GAWTC | 4 cut(s) | 106, 377, 434, 1415 |
| Tru1I | TTAA | 3 cut(s) | 641, 836, 1472 |
| Tru9I | TTAA | 3 cut(s) | 641, 836, 1472 |
| TscAI | CASTG | 5 cut(s) | 43, 513, 771, 973, 1111 |
| TseFI | GTSAC | 2 cut(s) | 493, 975 |
| TseI | GCWGC | 6 cut(s) | 310, 770, 1145, 1478, 1481, 1490 |
| Tsp45I | GTSAC | 2 cut(s) | 493, 975 |
| TspDTI | ATGAA | 1 cut(s) | 918 |
| TspGWI | ACGGA | 2 cut(s) | 336, 1356 |
| TspRI | CASTG | 5 cut(s) | 43, 513, 771, 973, 1111 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 1218 |
| VneI | GTGCAC | 1 cut(s) | 1131 |
| VpaK11BI | GGWCC | 4 cut(s) | 111, 534, 1109, 1454 |
| VspI | ATTAAT | 1 cut(s) | 1472 |
| XapI | RAATTY | 4 cut(s) | 478, 560, 670, 748 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 698 |
| XspI | CTAG | 4 cut(s) | 713, 1070, 1362, 1532 |
| Zsp2I | ATGCAT | 1 cut(s) | 134 |