Rw3G027620

Zinc finger (C3HC4-type RING finger) family protein

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr3
Physical Location & Seq
Forward (+)
39588403 .. 39593267
4865 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw3G027620.1

Sequence Viewer

Length: 1566 bp
ATGGGAAAGACTGAAGGAGAGCAGGGTTCGGTTTCCAGTGCGGGCTCTGACCCCTCATCCCAAAATGCAGAGACTCACAACTGTCCTTGTTGGTATGATAGGAGGATTCGGACCCTAATTGGCCTCAGATGCATTTTGGTTCTCTTTCTCTCTCTTGCTTTGTTCCTCTCTGCAATGTTCTGGTTGCCTCCATTTCTTCAGTTTGCGGATCACGGCGATCTGGATCTTGATCCAAAGTTCAGAGATCATTCTATAGTAGCAAGTTTCAATCTTCGGAAGCCGGTTTCTTTGCTGGAGGATAATGTCTTGCAGCTTGAAGATAACATTTTTGATGAGATAGTTGCTCCGTCAACTAAAGTGGTTATCCTATCTCTGGAATCCTTAGCTGGATCAAATGTAACAAGAGTCGTATTTGGGGTTGATCCTGACCCAGAATCATCAAAGTTATTGCCAACTTCTCAAAGTTTGATCAAAGAAAATTTTGAATATCTGGTCACACACCAATCACTGAGCCTAAATACATCCTTGTTTGGGTCCACTTCCTTTTTCGAGGTGCTAAAATTTCCAGATGGAATTACCATAATTCCACCACAGAAAGCGTTTCTTCTGCAGAAAGTGCAAATCCTTTTCAATTTCACCTTAAACTTCTCTATCTATCAAATACAACAAAATTTCAAAGAACTGGAAAGCCAGCTGAAGTCTGGGTTACATCTAGCACCCTATGAGAACCTTTATGTTAGCTTGTCAAATTCAAAAGGTTCAACAGTGGCAGCCCCTACTACTGTTCAGTCATATGTTCTATTGACGGTTGGCAATACTCCTTCAATGCAAAGATTAAAACAACTGGCTCAAACCATCACACATTCTCATTCAAGAAACCTGGGCCTGAATAATACGGTATTTGGTAGAGTCAAGCAAGTTCGTCTTTCATCTATTTTGCAACATTCCCTCAATGGTGGAGATGGCACTGCGTGGTCACCTTCTCCTGCTCCATTGCCTCATCCCCACCCCCCCCATCATGCCCACCACCACCATCACCACCGCCATCGCCATCACCACAATTCCCAGCTAGCTCCTGCAATTTCACCTGCACCTGCAACTGGCAGTGGTCCACCCGCAACGTTCAAAGGTGCACCTGGGCCAGCTGCTCATTCACCTGAGCCACACAAAAGTATGCCTGCACCTGAGAAAAGTTGTGAAGCAAAGCCTCCCAGCTTTTGGTCTGGTCGTAGAGGGAAGGCTGGAAAGCAGTCTCGTTTATCCCCTGCCGGCACACCAGATGTTTCTCCTCCCGTCTTTGGTACCTCACCCCAAAAGCAACTACACCCATCAGCACCCGTTTCTCGTTCAGTACCAGCATCTAGTCCGTTGCCTCATGTAGTTTTTGCTCATGTTCTTCCGCCATCAAAGAGTGAATCAGATAGTAGCCATTCTTACACAGGGCAATCACCTGGACCATCGCCGTCAACATTAATTGCAGCAGCTTCTGCAGCTCTTCTACCTTGTGTTCAATGGGCATTATCACTATTCCTAGCTTTGGTGTTACTTTATGACAACAGGGGATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

521

Amino Acids

56.45

Weight (kDa)

8.85

Isoelectric Point (pI)

57.04

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF7036 PF23041 88 - 178 1.1e-27 Domain of unknown function (DUF7036)
DUF7036 PF23041 211 - 302 7.5e-24 Domain of unknown function (DUF7036)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 2 cut(s) 1096, 1102
Acc36I ACCTGC 2 cut(s) 1096, 1102
Acc65I GGTACC 1 cut(s) 1301
AccB1I GGYRCC 1 cut(s) 1301
AccB7I CCANNNNNTGG 1 cut(s) 1218
AciI CCGC 5 cut(s) 41, 206, 1042, 1116, 1400
AclI AACGTT 1 cut(s) 1121
AclWI GGATC 5 cut(s) 216, 224, 231, 397, 416
AcsI RAATTY 4 cut(s) 478, 560, 670, 748
AcuI CTGAAG 3 cut(s) 33, 182, 716
AdeI CACNNNGTG 1 cut(s) 972
AfaI GTAC 2 cut(s) 1303, 1353
AfiI CCNNNNNNNGG 6 cut(s) 373, 531, 1100, 1218, 1298, 1537
AjnI CCWGG 3 cut(s) 879, 1135, 1450
Alw21I GWGCWC 1 cut(s) 1135
Alw26I GTCTC 2 cut(s) 65, 1257
Alw44I GTGCAC 1 cut(s) 1131
AlwI GGATC 5 cut(s) 216, 224, 231, 397, 416
AlwNI CAGNNNCTG 1 cut(s) 1487
AoxI GGCC 3 cut(s) 121, 883, 1139
ApaLI GTGCAC 1 cut(s) 1131
ApeKI GCWGC 6 cut(s) 310, 770, 1145, 1478, 1481, 1490
ApoI RAATTY 4 cut(s) 478, 560, 670, 748
AseI ATTAAT 1 cut(s) 1472
Asp718I GGTACC 1 cut(s) 1301
AspS9I GGNCC 6 cut(s) 111, 534, 883, 1109, 1139, 1454
AsuHPI GGTGA 8 cut(s) 628, 969, 1028, 1046, 1077, 1146, 1299, 1440
AsuNHI GCTAGC 1 cut(s) 1069
AvaII GGWCC 4 cut(s) 111, 534, 1109, 1454
BaeGI GKGCMC 1 cut(s) 1135
BanI GGYRCC 1 cut(s) 1301
BanII GRGCYC 1 cut(s) 47
Bbv12I GWGCWC 1 cut(s) 1135
BbvI GCAGC 6 cut(s) 322, 782, 1132, 1490, 1493, 1502
BceAI ACGGC 2 cut(s) 229, 1447
BciT130I CCWGG 3 cut(s) 881, 1137, 1452
BclI TGATCA 1 cut(s) 468
BcoDI GTCTC 2 cut(s) 65, 1257
BfaI CTAG 4 cut(s) 713, 1070, 1362, 1532
BfmI CTRYAG 3 cut(s) 252, 608, 1488
BfuAI ACCTGC 2 cut(s) 1096, 1102
BisI GCNGC 6 cut(s) 311, 771, 1146, 1479, 1482, 1491
BlsI GCNGC 6 cut(s) 312, 772, 1147, 1480, 1483, 1492
Bme1390I CCNGG 3 cut(s) 881, 1137, 1452
Bme18I GGWCC 4 cut(s) 111, 534, 1109, 1454
BmgT120I GGNCC 6 cut(s) 111, 534, 883, 1109, 1139, 1454
BmiI GGNNCC 3 cut(s) 113, 535, 1303
BmrFI CCNGG 3 cut(s) 881, 1137, 1452
BmsI GCATC 2 cut(s) 119, 1367
BmtI GCTAGC 1 cut(s) 1073
BpmI CTGGAG 1 cut(s) 314
Bpu10I CCTNAGC 2 cut(s) 382, 1158
BsaBI GATNNNNATC 2 cut(s) 222, 228
BsaJI CCNNGG 2 cut(s) 880, 1136
Bsc4I CCNNNNNNNGG 6 cut(s) 373, 531, 1100, 1218, 1298, 1537
Bse118I RCCGGY 2 cut(s) 280, 1268
Bse1I ACTGG 4 cut(s) 36, 687, 849, 1105
Bse3DI GCAATG 2 cut(s) 180, 992
Bse8I GATNNNNATC 2 cut(s) 222, 228
BseBI CCWGG 3 cut(s) 881, 1137, 1452
BseDI CCNNGG 2 cut(s) 880, 1136
BseGI GGATG 3 cut(s) 56, 521, 1000
BseJI GATNNNNATC 2 cut(s) 222, 228
BseLI CCNNNNNNNGG 6 cut(s) 373, 531, 1100, 1218, 1298, 1537
BseMI GCAATG 2 cut(s) 180, 992
BseMII CTCAG 4 cut(s) 139, 500, 1149, 1176
BseNI ACTGG 4 cut(s) 36, 687, 849, 1105
BseRI GAGGAG 1 cut(s) 1278
BseSI GKGCMC 1 cut(s) 1135
BseXI GCAGC 6 cut(s) 322, 782, 1132, 1490, 1493, 1502
BseYI CCCAGC 2 cut(s) 1065, 1211
BsgI GTGCAG 2 cut(s) 1074, 1164
BshFI GGCC 3 cut(s) 123, 885, 1141
BshNI GGYRCC 1 cut(s) 1301
BsiHKAI GWGCWC 1 cut(s) 1135
BsiSI CCGG 2 cut(s) 281, 1269
BslI CCNNNNNNNGG 6 cut(s) 373, 531, 1100, 1218, 1298, 1537
BsmAI GTCTC 2 cut(s) 65, 1257
BsnI GGCC 3 cut(s) 123, 885, 1141
Bsp1286I GDGCHC 2 cut(s) 47, 1135
Bsp143I GATC 8 cut(s) 208, 217, 223, 229, 244, 389, 421, 468
BspACI CCGC 5 cut(s) 41, 206, 1042, 1116, 1400
BspANI GGCC 3 cut(s) 123, 885, 1141
BspCNI CTCAG 4 cut(s) 138, 501, 1150, 1177
BspLI GGNNCC 3 cut(s) 113, 535, 1303
BspMAI CTGCAG 2 cut(s) 612, 1492
BspMI ACCTGC 2 cut(s) 1096, 1102
BspOI GCTAGC 1 cut(s) 1073
BspPI GGATC 5 cut(s) 216, 224, 231, 397, 416
BspQI GCTCTTC 1 cut(s) 1500
BspT107I GGYRCC 1 cut(s) 1301
BsrDI GCAATG 2 cut(s) 180, 992
BsrFI RCCGGY 2 cut(s) 280, 1268
BsrI ACTGG 4 cut(s) 36, 687, 849, 1105
BssAI RCCGGY 2 cut(s) 280, 1268
BssECI CCNNGG 2 cut(s) 880, 1136
BssMI GATC 8 cut(s) 208, 217, 223, 229, 244, 389, 421, 468
Bst2UI CCWGG 3 cut(s) 881, 1137, 1452
Bst4CI ACNGT 5 cut(s) 83, 766, 784, 808, 898
Bst6I CTCTTC 1 cut(s) 1500
BstAPI GCANNNNNTGC 2 cut(s) 616, 1487
BstC8I GCNNGC 6 cut(s) 43, 692, 1071, 1143, 1179, 1270
BstDEI CTNAG 5 cut(s) 125, 382, 509, 1158, 1185
BstEII GGTNACC 1 cut(s) 975
BstF5I GGATG 3 cut(s) 56, 521, 1000
BstKTI GATC 8 cut(s) 211, 220, 226, 232, 247, 392, 424, 471
BstMAI GTCTC 2 cut(s) 65, 1257
BstMBI GATC 8 cut(s) 208, 217, 223, 229, 244, 389, 421, 468
BstMWI GCNNNNNNNGC 4 cut(s) 129, 616, 1487, 1490
BstNI CCWGG 3 cut(s) 881, 1137, 1452
BstPI GGTNACC 1 cut(s) 975
BstSCI CCNGG 3 cut(s) 879, 1135, 1450
BstSFI CTRYAG 3 cut(s) 252, 608, 1488
BstSLI GKGCMC 1 cut(s) 1135
BstV1I GCAGC 6 cut(s) 322, 782, 1132, 1490, 1493, 1502
BstX2I RGATCY 1 cut(s) 223
BstYI RGATCY 1 cut(s) 223
BsuRI GGCC 3 cut(s) 123, 885, 1141
BtgZI GCGATG 2 cut(s) 1031, 1443
BtsCI GGATG 3 cut(s) 56, 521, 1000
BtsI GCAGTG 2 cut(s) 966, 1111
BtsIMutI CAGTG 5 cut(s) 43, 506, 771, 966, 1111
BveI ACCTGC 2 cut(s) 1096, 1102
Cac8I GCNNGC 6 cut(s) 43, 692, 1071, 1143, 1179, 1270
CaiI CAGNNNCTG 1 cut(s) 1487
Cfr10I RCCGGY 2 cut(s) 280, 1268
Cfr13I GGNCC 6 cut(s) 111, 534, 883, 1109, 1139, 1454
Csp6I GTAC 2 cut(s) 1302, 1352
CspCI CAANNNNNGTGG 2 cut(s) 339, 374
CviAII CATG 3 cut(s) 1019, 1376, 1391
CviQI GTAC 2 cut(s) 1302, 1352
DdeI CTNAG 5 cut(s) 125, 382, 509, 1158, 1185
DpnI GATC 8 cut(s) 210, 219, 225, 231, 246, 391, 423, 470
DpnII GATC 8 cut(s) 208, 217, 223, 229, 244, 389, 421, 468
DraIII CACNNNGTG 1 cut(s) 972
Eam1104I CTCTTC 1 cut(s) 1500
EarI CTCTTC 1 cut(s) 1500
EciI GGCGGA 1 cut(s) 1389
Eco24I GRGCYC 1 cut(s) 47
Eco47I GGWCC 4 cut(s) 111, 534, 1109, 1454
Eco57I CTGAAG 3 cut(s) 33, 182, 716
Eco91I GGTNACC 1 cut(s) 975
EcoO65I GGTNACC 1 cut(s) 975
EcoRII CCWGG 3 cut(s) 879, 1135, 1450
EcoT22I ATGCAT 1 cut(s) 134
EcoT38I GRGCYC 1 cut(s) 47
FaeI CATG 3 cut(s) 1022, 1379, 1394
FalI AAGNNNNNCTT 4 cut(s) 588, 620, 909, 941
FatI CATG 3 cut(s) 1018, 1375, 1390
FauI CCCGC 2 cut(s) 34, 1123
FauNDI CATATG 1 cut(s) 793
FbaI TGATCA 1 cut(s) 468
Fnu4HI GCNGC 6 cut(s) 311, 771, 1146, 1479, 1482, 1491
FokI GGATG 3 cut(s) 43, 508, 987
FriOI GRGCYC 1 cut(s) 47
Fsp4HI GCNGC 6 cut(s) 311, 771, 1146, 1479, 1482, 1491
FspBI CTAG 4 cut(s) 713, 1070, 1362, 1532
GluI GCNGC 6 cut(s) 311, 771, 1146, 1479, 1482, 1491
GsaI CCCAGC 2 cut(s) 1069, 1215
GsuI CTGGAG 1 cut(s) 314
HaeIII GGCC 3 cut(s) 123, 885, 1141
HapII CCGG 2 cut(s) 281, 1269
Hin1II CATG 3 cut(s) 1022, 1379, 1394
HincII GTYRAC 2 cut(s) 351, 1467
HindII GTYRAC 2 cut(s) 351, 1467
HinfI GANTC 7 cut(s) 73, 106, 377, 405, 434, 909, 1415
HpaII CCGG 2 cut(s) 281, 1269
HphI GGTGA 8 cut(s) 628, 969, 1028, 1046, 1077, 1146, 1299, 1440
Hpy166II GTNNAC 5 cut(s) 351, 537, 1112, 1133, 1467
Hpy188I TCNGA 6 cut(s) 49, 111, 128, 242, 276, 1420
Hpy188III TCNNGA 6 cut(s) 221, 227, 374, 425, 566, 873
Hpy8I GTNNAC 5 cut(s) 351, 537, 1112, 1133, 1467
HpyAV CCTTC 4 cut(s) 8, 831, 990, 1231
HpyCH4III ACNGT 5 cut(s) 83, 766, 784, 808, 898
HpyCH4IV ACGT 1 cut(s) 1121
HpyF10VI GCNNNNNNNGC 4 cut(s) 129, 616, 1487, 1490
HpyF3I CTNAG 5 cut(s) 125, 382, 509, 1158, 1185
HpySE526I ACGT 1 cut(s) 1121
Hsp92II CATG 3 cut(s) 1022, 1379, 1394
KpnI GGTACC 1 cut(s) 1305
KroI GCCGGC 1 cut(s) 1268
KroNI GCCGGC 1 cut(s) 1270
Ksp22I TGATCA 1 cut(s) 468
Kzo9I GATC 8 cut(s) 208, 217, 223, 229, 244, 389, 421, 468
LguI GCTCTTC 1 cut(s) 1500
LmnI GCTCC 3 cut(s) 349, 994, 1078
Lsp1109I GCAGC 6 cut(s) 322, 782, 1132, 1490, 1493, 1502
LweI GCATC 2 cut(s) 119, 1367
MaeI CTAG 4 cut(s) 713, 1070, 1362, 1532
MaeII ACGT 1 cut(s) 1121
MaeIII GTNAC 5 cut(s) 397, 493, 705, 975, 1542
MalI GATC 8 cut(s) 210, 219, 225, 231, 246, 391, 423, 470
MboI GATC 8 cut(s) 208, 217, 223, 229, 244, 389, 421, 468
MboII GAAGA 6 cut(s) 188, 263, 329, 596, 1388, 1487
MflI RGATCY 1 cut(s) 223
MhlI GDGCHC 2 cut(s) 47, 1135
MlyI GAGTC 3 cut(s) 67, 414, 918
Mph1103I ATGCAT 1 cut(s) 134
MroNI GCCGGC 1 cut(s) 1268
MseI TTAA 3 cut(s) 641, 836, 1472
MspA1I CMGCKG 2 cut(s) 694, 1145
MspI CCGG 2 cut(s) 281, 1269
MspR9I CCNGG 3 cut(s) 881, 1137, 1452
MvaI CCWGG 3 cut(s) 881, 1137, 1452
MwoI GCNNNNNNNGC 4 cut(s) 129, 616, 1487, 1490
NaeI GCCGGC 1 cut(s) 1270
NdeI CATATG 1 cut(s) 793
NdeII GATC 8 cut(s) 208, 217, 223, 229, 244, 389, 421, 468
NgoMIV GCCGGC 1 cut(s) 1268
NheI GCTAGC 1 cut(s) 1069
NlaIII CATG 3 cut(s) 1022, 1379, 1394
NlaIV GGNNCC 3 cut(s) 113, 535, 1303
NmuCI GTSAC 2 cut(s) 493, 975
NsiI ATGCAT 1 cut(s) 134
PaqCI CACCTGC 2 cut(s) 1096, 1102
PciSI GCTCTTC 1 cut(s) 1500
PdiI GCCGGC 1 cut(s) 1270
PfeI GAWTC 4 cut(s) 106, 377, 434, 1415
PflMI CCANNNNNTGG 1 cut(s) 1218
PkrI GCNGC 6 cut(s) 312, 772, 1147, 1480, 1483, 1492
PleI GAGTC 3 cut(s) 67, 413, 917
PpsI GAGTC 3 cut(s) 67, 413, 917
PshBI ATTAAT 1 cut(s) 1472
Psp1406I AACGTT 1 cut(s) 1121
Psp6I CCWGG 3 cut(s) 879, 1135, 1450
PspEI GGTNACC 1 cut(s) 975
PspFI CCCAGC 2 cut(s) 1065, 1211
PspGI CCWGG 3 cut(s) 879, 1135, 1450
PspN4I GGNNCC 3 cut(s) 113, 535, 1303
PspPI GGNCC 6 cut(s) 111, 534, 883, 1109, 1139, 1454
PstI CTGCAG 2 cut(s) 612, 1492
PstNI CAGNNNCTG 1 cut(s) 1487
PsuI RGATCY 1 cut(s) 223
PvuII CAGCTG 2 cut(s) 694, 1145
RsaI GTAC 2 cut(s) 1303, 1353
RsaNI GTAC 2 cut(s) 1302, 1352
SapI GCTCTTC 1 cut(s) 1500
SaqAI TTAA 3 cut(s) 641, 836, 1472
SatI GCNGC 6 cut(s) 311, 771, 1146, 1479, 1482, 1491
Sau3AI GATC 8 cut(s) 208, 217, 223, 229, 244, 389, 421, 468
Sau96I GGNCC 6 cut(s) 111, 534, 883, 1109, 1139, 1454
SchI GAGTC 3 cut(s) 67, 414, 918
ScrFI CCNGG 3 cut(s) 881, 1137, 1452
SduI GDGCHC 2 cut(s) 47, 1135
SfaNI GCATC 2 cut(s) 119, 1367
SfcI CTRYAG 3 cut(s) 252, 608, 1488
SinI GGWCC 4 cut(s) 111, 534, 1109, 1454
SsiI CCGC 5 cut(s) 41, 206, 1042, 1116, 1400
SspMI CTAG 4 cut(s) 713, 1070, 1362, 1532
StyD4I CCNGG 3 cut(s) 879, 1135, 1450
TaaI ACNGT 5 cut(s) 83, 766, 784, 808, 898
TaiI ACGT 1 cut(s) 1124
TaqI TCGA 1 cut(s) 549
TfiI GAWTC 4 cut(s) 106, 377, 434, 1415
Tru1I TTAA 3 cut(s) 641, 836, 1472
Tru9I TTAA 3 cut(s) 641, 836, 1472
TscAI CASTG 5 cut(s) 43, 513, 771, 973, 1111
TseFI GTSAC 2 cut(s) 493, 975
TseI GCWGC 6 cut(s) 310, 770, 1145, 1478, 1481, 1490
Tsp45I GTSAC 2 cut(s) 493, 975
TspDTI ATGAA 1 cut(s) 918
TspGWI ACGGA 2 cut(s) 336, 1356
TspRI CASTG 5 cut(s) 43, 513, 771, 973, 1111
Van91I CCANNNNNTGG 1 cut(s) 1218
VneI GTGCAC 1 cut(s) 1131
VpaK11BI GGWCC 4 cut(s) 111, 534, 1109, 1454
VspI ATTAAT 1 cut(s) 1472
XapI RAATTY 4 cut(s) 478, 560, 670, 748
XcmI CCANNNNNNNNNTGG 1 cut(s) 698
XspI CTAG 4 cut(s) 713, 1070, 1362, 1532
Zsp2I ATGCAT 1 cut(s) 134
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.