Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3A

Orthogroup ID

OG0010943

Physical Location & Seq

Genomic Coordinates Forward (+)

43241587 .. 43246465

Gene Structure 4879 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3AG316500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1233 bp

ATGTACTATTTGAACCAGGTGGTTATCCTATCTCTGAAATCCTTAGCTGGATCAAATGTAACAAGAGTCGTATTTGGGGTTGATCCTGACCCAGAATCATCAAAGTTGTTGCCAACTTCTCAAAGTTTGATCAAAGAAAATTTTGAATATCTGGTCACACACCAATCACTGAGCCTAAATACATCCTTGTTTGGGAACACATCCTTTTTCGAGGTGCTAAAATTTCCAGATGGAATTACCATAATTCCACCACAGAAAGCGTTTCTTCTGCAGAAAGTGCAAATCCTTTTCAATTTCACCTTAAACTTCTCTATCTATCAAATACAACTAAATTTCAATGAACTGGAAAGCCAGCTGAAGTCTGGGTTACATCTAGCACCCTATGAGAACCTTTATGTTAGCTTGTCAAATTCAAAAGGTTCAACAGTGGCAGCCCCTACTACTGTTCAGTCATCTGTTCTATTGACGGTTGGCAATACTCCTTCAATGCAAAGATTAAAACAACTGGCTCAAACCATCACACATTCTCATTCAAGAAACCTGGGCCTGAATAATACGGTATTTGGTAGAGTCAAGCAAGTTCGTCTTTCATCTATTTTGCAACATTCCCTCAATGGTGGAGATGGCACTGCGTGGTCGCCTTCTCCTGCTCCATTGCCTCATCCCCACCCCCCCCATCACGCCCACCATCACCATCACCACCACCACCACCATCGCCATCACCACAATTCCCAGCTAGCTCCTGCAATTTCACCTGCACCTGCAACTGGCAGTGGTCCACCCGCAACGTTCAAAGGTGCACCTGGACCAGCTGATCATTCACCTAAGCCACACAAAAGTATGCCTGCACCTGAGAAAAGTTGTGAAGCAAAGCCTCCCAGTTTTTGGTCTGGTCGTAGAGGGAAGGCTGGAAAGCAGTCTCGTTTATCCCCTGCCGGCGCACCAGATGTTTCTCCTCCCGTCTTTGGTACCTCACCCCAAAAGCAAGTACACCCATCAGCACCCGTTTCTCGTTCAGTACCAGCATCTAGTCCGTTGCCTCATGTAGTTTTTGCTCATGTTCTTCCGCCATCAAAGAGTGAATCAGATAGTAGCCATTCTTACACAGGGCAATCACCTGGACCATCGCCGTCAACATTAATTGCAGCAGCTTCTGCAGCTCTTCTACCTTGTGTTCAATGGGCATTATCACTATTCCTAGCTTTGGTGTTACTTTATAACAGCAGAGGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

410

Amino Acids

44.09

Weight (kDa)

9.78

Isoelectric Point (pI)

55.15

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF7036	PF23041	6 - 65	5.7e-14	Domain of unknown function (DUF7036)
DUF7036	PF23041	98 - 189	2.5e-23	Domain of unknown function (DUF7036)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010943)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G56590 AT3G56590
fragaria_vesca	FvH4_1g29240 FvH4_1g29240 FvH4_1g29240 FvH4_1g29240
prunus_persica	Prupe.7G019800_v2.0.a1 Prupe.7G019800_v2.0.a1
rosa_chinensis	RchiOBHm_Chr3g0494681
rosa_laevigata	RLG00000022664
rosa_multiflora	Rmu_sc0000840.1_g000020
rosa_roxburghii	Rroxscaffold_6G00390970
rosa_rugosa	Rorug03G0268000 Rorug03G0268000 Rorug03G0268000
rosa_samantha	Rh3AG316500 Rh3BG351800 Rh3CG348800 Rh3DG351400
rosa_wichuraiana	Rw3G027620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1218
AarI	CACCTGC	2 cut(s)	763, 769
Acc36I	ACCTGC	2 cut(s)	763, 769
Acc65I	GGTACC	1 cut(s)	968
AccB1I	GGYRCC	1 cut(s)	968
AccB7I	CCANNNNNTGG	1 cut(s)	885
AciI	CCGC	2 cut(s)	783, 1067
AclI	AACGTT	1 cut(s)	788
AclWI	GGATC	2 cut(s)	58, 77
AcsI	RAATTY	4 cut(s)	139, 221, 331, 409
AcuI	CTGAAG	1 cut(s)	377
AdeI	CACNNNGTG	1 cut(s)	633
AfaI	GTAC	4 cut(s)	5, 970, 990, 1020
AfiI	CCNNNNNNNGG	5 cut(s)	192, 767, 885, 965, 1204
AjnI	CCWGG	4 cut(s)	15, 540, 802, 1117
AluBI	AGCT	9 cut(s)	47, 355, 402, 736, 740, 812, 1151, 1160, 1202
AluI	AGCT	9 cut(s)	47, 355, 402, 736, 740, 812, 1151, 1160, 1202
Alw21I	GWGCWC	1 cut(s)	802
Alw26I	GTCTC	1 cut(s)	924
Alw44I	GTGCAC	1 cut(s)	798
AlwI	GGATC	2 cut(s)	58, 77
AlwNI	CAGNNNCTG	1 cut(s)	1154
AoxI	GGCC	1 cut(s)	544
ApaLI	GTGCAC	1 cut(s)	798
ApeKI	GCWGC	4 cut(s)	431, 1145, 1148, 1157
ApoI	RAATTY	4 cut(s)	139, 221, 331, 409
AseI	ATTAAT	1 cut(s)	1139
Asp718I	GGTACC	1 cut(s)	968
AspLEI	GCGC	1 cut(s)	941
AspS9I	GGNCC	4 cut(s)	544, 776, 806, 1121
AsuHPI	GGTGA	8 cut(s)	289, 683, 689, 713, 744, 813, 966, 1107
AsuNHI	GCTAGC	1 cut(s)	736
AvaII	GGWCC	3 cut(s)	776, 806, 1121
BaeGI	GKGCMC	1 cut(s)	802
BanI	GGYRCC	1 cut(s)	968
Bbv12I	GWGCWC	1 cut(s)	802
BbvI	GCAGC	4 cut(s)	443, 1157, 1160, 1169
BceAI	ACGGC	1 cut(s)	1114
BciT130I	CCWGG	4 cut(s)	17, 542, 804, 1119
BclI	TGATCA	2 cut(s)	129, 814
BcoDI	GTCTC	1 cut(s)	924
BfaI	CTAG	4 cut(s)	374, 737, 1029, 1199
BfmI	CTRYAG	2 cut(s)	269, 1155
BfuAI	ACCTGC	2 cut(s)	763, 769
BisI	GCNGC	4 cut(s)	432, 1146, 1149, 1158
BlsI	GCNGC	4 cut(s)	433, 1147, 1150, 1159
Bme1390I	CCNGG	4 cut(s)	17, 542, 804, 1119
Bme18I	GGWCC	3 cut(s)	776, 806, 1121
BmgT120I	GGNCC	4 cut(s)	544, 776, 806, 1121
BmiI	GGNNCC	1 cut(s)	970
BmrFI	CCNGG	4 cut(s)	17, 542, 804, 1119
BmrI	ACTGGG	1 cut(s)	873
BmsI	GCATC	1 cut(s)	1034
BmtI	GCTAGC	1 cut(s)	740
BmuI	ACTGGG	1 cut(s)	873
Bpu10I	CCTNAGC	2 cut(s)	43, 825
BsaJI	CCNNGG	1 cut(s)	541
Bsc4I	CCNNNNNNNGG	5 cut(s)	192, 767, 885, 965, 1204
Bse118I	RCCGGY	1 cut(s)	935
Bse1I	ACTGG	4 cut(s)	348, 510, 772, 879
Bse3DI	GCAATG	1 cut(s)	653
BseBI	CCWGG	4 cut(s)	17, 542, 804, 1119
BseDI	CCNNGG	1 cut(s)	541
BseGI	GGATG	3 cut(s)	182, 200, 661
BseLI	CCNNNNNNNGG	5 cut(s)	192, 767, 885, 965, 1204
BseMI	GCAATG	1 cut(s)	653
BseMII	CTCAG	2 cut(s)	161, 843
BseNI	ACTGG	4 cut(s)	348, 510, 772, 879
BseRI	GAGGAG	1 cut(s)	945
BseSI	GKGCMC	1 cut(s)	802
BseXI	GCAGC	4 cut(s)	443, 1157, 1160, 1169
BseYI	CCCAGC	1 cut(s)	732
BsgI	GTGCAG	2 cut(s)	741, 831
BshFI	GGCC	1 cut(s)	546
BshNI	GGYRCC	1 cut(s)	968
BsiHKAI	GWGCWC	1 cut(s)	802
BsiSI	CCGG	1 cut(s)	936
BslI	CCNNNNNNNGG	5 cut(s)	192, 767, 885, 965, 1204
BsmAI	GTCTC	1 cut(s)	924
BsnI	GGCC	1 cut(s)	546
Bsp1286I	GDGCHC	1 cut(s)	802
Bsp143I	GATC	4 cut(s)	50, 82, 129, 814
BspACI	CCGC	2 cut(s)	783, 1067
BspANI	GGCC	1 cut(s)	546
BspCNI	CTCAG	2 cut(s)	162, 844
BspLI	GGNNCC	1 cut(s)	970
BspMAI	CTGCAG	2 cut(s)	273, 1159
BspMI	ACCTGC	2 cut(s)	763, 769
BspOI	GCTAGC	1 cut(s)	740
BspPI	GGATC	2 cut(s)	58, 77
BspQI	GCTCTTC	1 cut(s)	1167
BspT107I	GGYRCC	1 cut(s)	968
BsrDI	GCAATG	1 cut(s)	653
BsrFI	RCCGGY	1 cut(s)	935
BsrI	ACTGG	4 cut(s)	348, 510, 772, 879
BssAI	RCCGGY	1 cut(s)	935
BssECI	CCNNGG	1 cut(s)	541
BssMI	GATC	4 cut(s)	50, 82, 129, 814
Bst2UI	CCWGG	4 cut(s)	17, 542, 804, 1119
Bst4CI	ACNGT	4 cut(s)	427, 445, 469, 559
Bst6I	CTCTTC	1 cut(s)	1167
BstAPI	GCANNNNNTGC	2 cut(s)	277, 1154
BstC8I	GCNNGC	4 cut(s)	353, 738, 846, 937
BstDEI	CTNAG	4 cut(s)	43, 170, 825, 852
BstF5I	GGATG	3 cut(s)	182, 200, 661
BstHHI	GCGC	1 cut(s)	941
BstKTI	GATC	4 cut(s)	53, 85, 132, 817
BstMAI	GTCTC	1 cut(s)	924
BstMBI	GATC	4 cut(s)	50, 82, 129, 814
BstMWI	GCNNNNNNNGC	3 cut(s)	277, 1154, 1157
BstNI	CCWGG	4 cut(s)	17, 542, 804, 1119
BstSCI	CCNGG	4 cut(s)	15, 540, 802, 1117
BstSFI	CTRYAG	2 cut(s)	269, 1155
BstSLI	GKGCMC	1 cut(s)	802
BstV1I	GCAGC	4 cut(s)	443, 1157, 1160, 1169
BsuRI	GGCC	1 cut(s)	546
BtgZI	GCGATG	2 cut(s)	698, 1110
BtsCI	GGATG	3 cut(s)	182, 200, 661
BtsI	GCAGTG	2 cut(s)	627, 778
BtsIMutI	CAGTG	4 cut(s)	167, 432, 627, 778
BveI	ACCTGC	2 cut(s)	763, 769
Cac8I	GCNNGC	4 cut(s)	353, 738, 846, 937
CaiI	CAGNNNCTG	1 cut(s)	1154
CfoI	GCGC	1 cut(s)	941
Cfr10I	RCCGGY	1 cut(s)	935
Cfr13I	GGNCC	4 cut(s)	544, 776, 806, 1121
CsiI	ACCWGGT	1 cut(s)	15
Csp6I	GTAC	4 cut(s)	4, 969, 989, 1019
CviAII	CATG	2 cut(s)	1043, 1058
CviQI	GTAC	4 cut(s)	4, 969, 989, 1019
DdeI	CTNAG	4 cut(s)	43, 170, 825, 852
DpnI	GATC	4 cut(s)	52, 84, 131, 816
DpnII	GATC	4 cut(s)	50, 82, 129, 814
DraIII	CACNNNGTG	1 cut(s)	633
Eam1104I	CTCTTC	1 cut(s)	1167
EarI	CTCTTC	1 cut(s)	1167
EciI	GGCGGA	1 cut(s)	1056
Eco47I	GGWCC	3 cut(s)	776, 806, 1121
Eco57I	CTGAAG	1 cut(s)	377
EcoRII	CCWGG	4 cut(s)	15, 540, 802, 1117
FaeI	CATG	2 cut(s)	1046, 1061
FaiI	YATR	7 cut(s)	242, 384, 396, 842, 1044, 1059, 1218
FalI	AAGNNNNNCTT	4 cut(s)	249, 281, 570, 602
FatI	CATG	2 cut(s)	1042, 1057
FauI	CCCGC	1 cut(s)	790
FbaI	TGATCA	2 cut(s)	129, 814
Fnu4HI	GCNGC	4 cut(s)	432, 1146, 1149, 1158
FokI	GGATG	3 cut(s)	169, 187, 648
Fsp4HI	GCNGC	4 cut(s)	432, 1146, 1149, 1158
FspBI	CTAG	4 cut(s)	374, 737, 1029, 1199
GlaI	GCGC	1 cut(s)	940
GluI	GCNGC	4 cut(s)	432, 1146, 1149, 1158
GsaI	CCCAGC	1 cut(s)	736
HaeIII	GGCC	1 cut(s)	546
HapII	CCGG	1 cut(s)	936
HhaI	GCGC	1 cut(s)	941
Hin1II	CATG	2 cut(s)	1046, 1061
Hin6I	GCGC	1 cut(s)	939
HinP1I	GCGC	1 cut(s)	939
HincII	GTYRAC	1 cut(s)	1134
HindII	GTYRAC	1 cut(s)	1134
HinfI	GANTC	4 cut(s)	66, 95, 570, 1082
HpaII	CCGG	1 cut(s)	936
HphI	GGTGA	8 cut(s)	289, 683, 689, 713, 744, 813, 966, 1107
Hpy166II	GTNNAC	4 cut(s)	779, 800, 991, 1134
Hpy188I	TCNGA	2 cut(s)	36, 1087
Hpy188III	TCNNGA	3 cut(s)	86, 227, 534
Hpy8I	GTNNAC	4 cut(s)	779, 800, 991, 1134
HpyAV	CCTTC	3 cut(s)	492, 651, 898
HpyCH4III	ACNGT	4 cut(s)	427, 445, 469, 559
HpyCH4IV	ACGT	1 cut(s)	788
HpyF10VI	GCNNNNNNNGC	3 cut(s)	277, 1154, 1157
HpyF3I	CTNAG	4 cut(s)	43, 170, 825, 852
HpySE526I	ACGT	1 cut(s)	788
Hsp92II	CATG	2 cut(s)	1046, 1061
HspAI	GCGC	1 cut(s)	939
KpnI	GGTACC	1 cut(s)	972
KroI	GCCGGC	1 cut(s)	935
KroNI	GCCGGC	1 cut(s)	937
Ksp22I	TGATCA	2 cut(s)	129, 814
Kzo9I	GATC	4 cut(s)	50, 82, 129, 814
LguI	GCTCTTC	1 cut(s)	1167
LmnI	GCTCC	2 cut(s)	655, 745
Lsp1109I	GCAGC	4 cut(s)	443, 1157, 1160, 1169
LweI	GCATC	1 cut(s)	1034
MabI	ACCWGGT	1 cut(s)	15
MaeI	CTAG	4 cut(s)	374, 737, 1029, 1199
MaeII	ACGT	1 cut(s)	788
MaeIII	GTNAC	4 cut(s)	58, 154, 366, 1209
MalI	GATC	4 cut(s)	52, 84, 131, 816
MboI	GATC	4 cut(s)	50, 82, 129, 814
MboII	GAAGA	3 cut(s)	257, 1055, 1154
MhlI	GDGCHC	1 cut(s)	802
MlyI	GAGTC	2 cut(s)	75, 579
MnlI	CCTC	9 cut(s)	205, 620, 669, 885, 893, 966, 982, 1050, 1220
MroNI	GCCGGC	1 cut(s)	935
MseI	TTAA	3 cut(s)	302, 497, 1139
MspA1I	CMGCKG	2 cut(s)	355, 812
MspI	CCGG	1 cut(s)	936
MspR9I	CCNGG	4 cut(s)	17, 542, 804, 1119
MvaI	CCWGG	4 cut(s)	17, 542, 804, 1119
MwoI	GCNNNNNNNGC	3 cut(s)	277, 1154, 1157
NaeI	GCCGGC	1 cut(s)	937
NdeII	GATC	4 cut(s)	50, 82, 129, 814
NgoMIV	GCCGGC	1 cut(s)	935
NheI	GCTAGC	1 cut(s)	736
NlaIII	CATG	2 cut(s)	1046, 1061
NlaIV	GGNNCC	1 cut(s)	970
NmuCI	GTSAC	1 cut(s)	154
PaqCI	CACCTGC	2 cut(s)	763, 769
PciSI	GCTCTTC	1 cut(s)	1167
PdiI	GCCGGC	1 cut(s)	937
PfeI	GAWTC	2 cut(s)	95, 1082
PflMI	CCANNNNNTGG	1 cut(s)	885
PkrI	GCNGC	4 cut(s)	433, 1147, 1150, 1159
PleI	GAGTC	2 cut(s)	74, 578
PpsI	GAGTC	2 cut(s)	74, 578
PshBI	ATTAAT	1 cut(s)	1139
PsiI	TTATAA	1 cut(s)	1218
Psp1406I	AACGTT	1 cut(s)	788
Psp6I	CCWGG	4 cut(s)	15, 540, 802, 1117
PspFI	CCCAGC	1 cut(s)	732
PspGI	CCWGG	4 cut(s)	15, 540, 802, 1117
PspN4I	GGNNCC	1 cut(s)	970
PspPI	GGNCC	4 cut(s)	544, 776, 806, 1121
PstI	CTGCAG	2 cut(s)	273, 1159
PstNI	CAGNNNCTG	1 cut(s)	1154
PvuII	CAGCTG	2 cut(s)	355, 812
RsaI	GTAC	4 cut(s)	5, 970, 990, 1020
RsaNI	GTAC	4 cut(s)	4, 969, 989, 1019
SapI	GCTCTTC	1 cut(s)	1167
SaqAI	TTAA	3 cut(s)	302, 497, 1139
SatI	GCNGC	4 cut(s)	432, 1146, 1149, 1158
Sau3AI	GATC	4 cut(s)	50, 82, 129, 814
Sau96I	GGNCC	4 cut(s)	544, 776, 806, 1121
SchI	GAGTC	2 cut(s)	75, 579
ScrFI	CCNGG	4 cut(s)	17, 542, 804, 1119
SduI	GDGCHC	1 cut(s)	802
SexAI	ACCWGGT	1 cut(s)	15
SfaNI	GCATC	1 cut(s)	1034
SfcI	CTRYAG	2 cut(s)	269, 1155
SinI	GGWCC	3 cut(s)	776, 806, 1121
SsiI	CCGC	2 cut(s)	783, 1067
SspMI	CTAG	4 cut(s)	374, 737, 1029, 1199
StyD4I	CCNGG	4 cut(s)	15, 540, 802, 1117
TaaI	ACNGT	4 cut(s)	427, 445, 469, 559
TaiI	ACGT	1 cut(s)	791
TaqI	TCGA	1 cut(s)	210
TatI	WGTACW	2 cut(s)	3, 988
TfiI	GAWTC	2 cut(s)	95, 1082
Tru1I	TTAA	3 cut(s)	302, 497, 1139
Tru9I	TTAA	3 cut(s)	302, 497, 1139
TscAI	CASTG	4 cut(s)	174, 432, 634, 778
TseFI	GTSAC	1 cut(s)	154
TseI	GCWGC	4 cut(s)	431, 1145, 1148, 1157
Tsp45I	GTSAC	1 cut(s)	154
TspDTI	ATGAA	2 cut(s)	354, 579
TspGWI	ACGGA	1 cut(s)	1023
TspRI	CASTG	4 cut(s)	174, 432, 634, 778
Van91I	CCANNNNNTGG	1 cut(s)	885
VneI	GTGCAC	1 cut(s)	798
VpaK11BI	GGWCC	3 cut(s)	776, 806, 1121
VspI	ATTAAT	1 cut(s)	1139
XapI	RAATTY	4 cut(s)	139, 221, 331, 409
XcmI	CCANNNNNNNNNTGG	1 cut(s)	359
XspI	CTAG	4 cut(s)	374, 737, 1029, 1199

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.